EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000008403 (Gene tree)
Gene ID: -
Gene Symbol: npm1
Alias: -
Full Name: Xenopus tropicalis nucleophosmin (nucleolar phosphoprotein B23%2C numatrin) (npm1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 10625 bases
Position: chrGL172660.1:4427231-4437855
Accession: NM_203552
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000018419	Nucleoplasmin	PF03066.15	2.3e-41	1	1
ENSXETP00000062830	Nucleoplasmin	PF03066.15	2.4e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000062601	-	1049	-	ENSXETP00000062830	303 (aa)	-	F6RXM3
ENSXETT00000018419	-	1052	-	ENSXETP00000018419	304 (aa)	-	Q6PBF8

Gene Model

Click here to download ENSXETG00000008403's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000008403's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000008403	npm1	95	43.686	ENSAPOG00000004268	npm1b	98	43.667	Acanthochromis_polyacanthus
ENSXETG00000008403	npm1	95	43.730	ENSAOCG00000012549	npm1b	98	43.711	Amphiprion_ocellaris
ENSXETG00000008403	npm1	95	43.408	ENSAPEG00000000868	npm1b	98	43.396	Amphiprion_percula
ENSXETG00000008403	npm1	99	36.792	ENSATEG00000006254	npm1b	98	43.648	Anabas_testudineus
ENSXETG00000008403	npm1	99	59.871	ENSACAG00000015626	-	100	62.745	Anolis_carolinensis
ENSXETG00000008403	npm1	98	41.905	ENSAMXG00000042148	npm1b	99	43.492	Astyanax_mexicanus
ENSXETG00000008403	npm1	87	40.809	ENSCAFG00000023359	-	100	35.897	Canis_familiaris
ENSXETG00000008403	npm1	99	64.333	ENSCPBG00000021221	-	60	64.333	Chrysemys_picta_bellii
ENSXETG00000008403	npm1	97	46.844	ENSCSEG00000004530	npm1b	98	45.515	Cynoglossus_semilaevis
ENSXETG00000008403	npm1	100	39.498	ENSCVAG00000013016	npm1b	99	40.810	Cyprinodon_variegatus
ENSXETG00000008403	npm1	95	46.939	ENSDARG00000037675	npm1b	99	46.154	Danio_rerio
ENSXETG00000008403	npm1	94	43.434	ENSELUG00000022123	npm1b	95	42.761	Esox_lucius
ENSXETG00000008403	npm1	94	61.888	ENSFALG00000003320	-	95	60.839	Ficedula_albicollis
ENSXETG00000008403	npm1	100	41.534	ENSFHEG00000020794	npm1b	99	42.540	Fundulus_heteroclitus
ENSXETG00000008403	npm1	99	37.377	ENSGMOG00000002689	npm1b	100	41.270	Gadus_morhua
ENSXETG00000008403	npm1	99	62.791	ENSGALG00000002197	-	73	61.794	Gallus_gallus
ENSXETG00000008403	npm1	100	40.523	ENSGAFG00000017709	npm1b	99	40.385	Gambusia_affinis
ENSXETG00000008403	npm1	99	40.532	ENSGACG00000016706	npm1b	98	44.631	Gasterosteus_aculeatus
ENSXETG00000008403	npm1	99	64.452	ENSGAGG00000020250	-	100	64.452	Gopherus_agassizii
ENSXETG00000008403	npm1	100	40.968	ENSHBUG00000019903	npm1b	92	44.186	Haplochromis_burtoni
ENSXETG00000008403	npm1	95	43.643	ENSHCOG00000003895	npm1b	96	42.268	Hippocampus_comes
ENSXETG00000008403	npm1	95	43.919	ENSIPUG00000020165	npm1b	97	45.608	Ictalurus_punctatus
ENSXETG00000008403	npm1	99	37.748	ENSKMAG00000008260	npm1b	99	43.234	Kryptolebias_marmoratus
ENSXETG00000008403	npm1	92	43.333	ENSLACG00000001779	-	100	45.296	Latimeria_chalumnae
ENSXETG00000008403	npm1	99	47.588	ENSLACG00000013460	-	100	48.039	Latimeria_chalumnae
ENSXETG00000008403	npm1	92	38.188	ENSLOCG00000001942	npm1b	99	36.039	Lepisosteus_oculatus
ENSXETG00000008403	npm1	71	37.931	ENSMAMG00000015335	npm1b	98	39.301	Mastacembelus_armatus
ENSXETG00000008403	npm1	92	61.786	ENSMGAG00000001591	-	100	61.429	Meleagris_gallopavo
ENSXETG00000008403	npm1	79	38.281	ENSMALG00000015383	npm1b	98	42.972	Monopterus_albus
ENSXETG00000008403	npm1	51	55.484	ENSNBRG00000014133	npm1b	78	55.484	Neolamprologus_brichardi
ENSXETG00000008403	npm1	99	39.482	ENSONIG00000001397	npm1b	98	42.105	Oreochromis_niloticus
ENSXETG00000008403	npm1	96	37.457	ENSOMEG00000003414	npm1b	97	38.644	Oryzias_melastigma
ENSXETG00000008403	npm1	96	44.079	ENSPKIG00000020050	npm1b	97	45.752	Paramormyrops_kingsleyae
ENSXETG00000008403	npm1	96	61.986	ENSPSIG00000011204	-	92	61.986	Pelodiscus_sinensis
ENSXETG00000008403	npm1	93	35.889	ENSPMAG00000004930	npm1b	99	36.364	Petromyzon_marinus
ENSXETG00000008403	npm1	100	41.720	ENSPFOG00000018357	npm1b	99	41.083	Poecilia_formosa
ENSXETG00000008403	npm1	98	44.000	ENSPNAG00000005498	npm1b	99	45.333	Pygocentrus_nattereri
ENSXETG00000008403	npm1	96	42.466	ENSSFOG00015005064	npm1b	98	42.466	Scleropages_formosus
ENSXETG00000008403	npm1	99	39.344	ENSSMAG00000008088	npm1b	99	42.810	Scophthalmus_maximus
ENSXETG00000008403	npm1	97	42.484	ENSSDUG00000007726	npm1b	98	44.771	Seriola_dumerili
ENSXETG00000008403	npm1	97	42.484	ENSSLDG00000021396	npm1b	98	44.444	Seriola_lalandi_dorsalis
ENSXETG00000008403	npm1	53	60.248	ENSSPUG00000015604	-	79	60.248	Sphenodon_punctatus
ENSXETG00000008403	npm1	52	69.620	ENSSPUG00000017271	-	80	68.944	Sphenodon_punctatus
ENSXETG00000008403	npm1	95	41.935	ENSSPAG00000011152	npm1b	98	43.396	Stegastes_partitus
ENSXETG00000008403	npm1	92	61.131	ENSTGUG00000014970	-	100	61.131	Taeniopygia_guttata
ENSXETG00000008403	npm1	95	42.361	ENSTRUG00000008105	npm1b	91	42.361	Takifugu_rubripes
ENSXETG00000008403	npm1	95	41.781	ENSTNIG00000013057	npm1b	96	41.438	Tetraodon_nigroviridis
ENSXETG00000008403	npm1	100	38.782	ENSXMAG00000001986	npm1b	99	41.587	Xiphophorus_maculatus