EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000008434 (Gene tree)
Gene ID: -
Gene Symbol: sf1
Alias: -
Full Name: Xenopus tropicalis splicing factor 1 (sf1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 19588 bases
Position: chrGL172782.1:774801-794388
Accession: NM_001011340
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000060675	KH_1	PF00013.29	1.7e-07	1	1
ENSXETP00000018471	KH_1	PF00013.29	1.9e-07	1	1
ENSXETP00000060675	zf-CCHC	PF00098.23	0.00014	1	1
ENSXETP00000018471	zf-CCHC	PF00098.23	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000018471	-	1848	-	ENSXETP00000018471	615 (aa)	-	F7DBZ6
ENSXETT00000064587	-	3238	XM_012961004	ENSXETP00000060675	571 (aa)	XP_012816458	Q5M7R7

Gene Model

Click here to download ENSXETG00000008434's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000008434's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000008434	sf1	62	86.264	ENSAPOG00000012341	sf1	85	72.959	Acanthochromis_polyacanthus
ENSXETG00000008434	sf1	68	81.553	ENSAMEG00000017828	SF1	85	70.863	Ailuropoda_melanoleuca
ENSXETG00000008434	sf1	62	85.070	ENSACIG00000016514	sf1	87	70.833	Amphilophus_citrinellus
ENSXETG00000008434	sf1	62	86.264	ENSAOCG00000010934	sf1	85	73.254	Amphiprion_ocellaris
ENSXETG00000008434	sf1	62	86.264	ENSAPEG00000009498	sf1	85	73.254	Amphiprion_percula
ENSXETG00000008434	sf1	60	87.429	ENSATEG00000001894	sf1	85	73.559	Anabas_testudineus
ENSXETG00000008434	sf1	68	72.019	ENSANAG00000022607	-	86	78.333	Aotus_nancymaae
ENSXETG00000008434	sf1	66	84.062	ENSANAG00000026664	-	98	81.340	Aotus_nancymaae
ENSXETG00000008434	sf1	62	87.006	ENSACLG00000007633	sf1	86	71.577	Astatotilapia_calliptera
ENSXETG00000008434	sf1	62	89.296	ENSAMXG00000003630	sf1	76	73.875	Astyanax_mexicanus
ENSXETG00000008434	sf1	68	81.553	ENSBTAG00000001035	SF1	97	69.545	Bos_taurus
ENSXETG00000008434	sf1	68	81.752	ENSCJAG00000002780	SF1	97	69.545	Callithrix_jacchus
ENSXETG00000008434	sf1	68	81.553	ENSCAFG00000014239	SF1	93	68.852	Canis_familiaris
ENSXETG00000008434	sf1	68	81.553	ENSCAFG00020014381	SF1	97	69.545	Canis_lupus_dingo
ENSXETG00000008434	sf1	68	81.553	ENSCHIG00000025867	SF1	97	69.545	Capra_hircus
ENSXETG00000008434	sf1	67	81.863	ENSCAPG00000010762	SF1	77	80.645	Cavia_aperea
ENSXETG00000008434	sf1	68	81.553	ENSCPOG00000012290	SF1	93	69.783	Cavia_porcellus
ENSXETG00000008434	sf1	66	83.805	ENSCCAG00000037881	SF1	98	80.861	Cebus_capucinus
ENSXETG00000008434	sf1	71	71.499	ENSCCAG00000023781	-	89	71.499	Cebus_capucinus
ENSXETG00000008434	sf1	66	83.805	ENSCATG00000011564	SF1	94	82.663	Cercocebus_atys
ENSXETG00000008434	sf1	68	81.553	ENSCSAG00000007258	SF1	86	75.420	Chlorocebus_sabaeus
ENSXETG00000008434	sf1	65	75.765	ENSCHOG00000006008	SF1	78	74.820	Choloepus_hoffmanni
ENSXETG00000008434	sf1	70	83.981	ENSCPBG00000023763	SF1	66	72.467	Chrysemys_picta_bellii
ENSXETG00000008434	sf1	54	67.093	ENSCING00000005564	-	77	60.104	Ciona_intestinalis
ENSXETG00000008434	sf1	98	45.546	ENSCSAVG00000009055	-	99	48.077	Ciona_savignyi
ENSXETG00000008434	sf1	66	84.021	ENSCANG00000042201	SF1	94	82.872	Colobus_angolensis_palliatus
ENSXETG00000008434	sf1	68	81.311	ENSCGRG00001003677	Sf1	97	69.388	Cricetulus_griseus_chok1gshd
ENSXETG00000008434	sf1	67	81.618	ENSCGRG00000001708	Sf1	85	76.546	Cricetulus_griseus_crigri
ENSXETG00000008434	sf1	56	89.264	ENSCSEG00000014375	sf1	82	71.404	Cynoglossus_semilaevis
ENSXETG00000008434	sf1	62	87.006	ENSCVAG00000001670	sf1	96	69.091	Cyprinodon_variegatus
ENSXETG00000008434	sf1	65	85.039	ENSDARG00000008188	sf1	96	72.117	Danio_rerio
ENSXETG00000008434	sf1	68	81.311	ENSDNOG00000001282	SF1	86	75.210	Dasypus_novemcinctus
ENSXETG00000008434	sf1	68	81.553	ENSDORG00000016334	Sf1	97	69.545	Dipodomys_ordii
ENSXETG00000008434	sf1	67	74.328	ENSETEG00000012830	SF1	82	64.274	Echinops_telfairi
ENSXETG00000008434	sf1	68	81.311	ENSEASG00005018272	SF1	86	75.210	Equus_asinus_asinus
ENSXETG00000008434	sf1	68	81.553	ENSECAG00000024544	SF1	86	75.420	Equus_caballus
ENSXETG00000008434	sf1	60	81.471	ENSEEUG00000001058	SF1	98	80.563	Erinaceus_europaeus
ENSXETG00000008434	sf1	56	91.411	ENSELUG00000013225	sf1	60	73.319	Esox_lucius
ENSXETG00000008434	sf1	68	81.752	ENSFCAG00000012231	SF1	93	68.852	Felis_catus
ENSXETG00000008434	sf1	67	81.863	ENSFDAG00000009833	SF1	77	80.645	Fukomys_damarensis
ENSXETG00000008434	sf1	60	87.356	ENSFHEG00000022656	sf1	85	72.774	Fundulus_heteroclitus
ENSXETG00000008434	sf1	97	63.009	ENSGMOG00000007469	sf1	96	63.542	Gadus_morhua
ENSXETG00000008434	sf1	62	85.083	ENSGAFG00000019284	sf1	94	72.167	Gambusia_affinis
ENSXETG00000008434	sf1	70	83.738	ENSGAGG00000021691	SF1	72	72.605	Gopherus_agassizii
ENSXETG00000008434	sf1	62	85.675	ENSHBUG00000011598	sf1	85	72.326	Haplochromis_burtoni
ENSXETG00000008434	sf1	68	81.553	ENSHGLG00000009541	SF1	93	68.852	Heterocephalus_glaber_female
ENSXETG00000008434	sf1	68	70.534	ENSHGLG00100008255	-	90	68.980	Heterocephalus_glaber_male
ENSXETG00000008434	sf1	53	88.852	ENSHGLG00100008076	-	81	77.945	Heterocephalus_glaber_male
ENSXETG00000008434	sf1	67	81.863	ENSHGLG00100013879	-	77	80.645	Heterocephalus_glaber_male
ENSXETG00000008434	sf1	65	82.507	ENSHCOG00000011388	sf1	85	72.213	Hippocampus_comes
ENSXETG00000008434	sf1	67	81.863	ENSSTOG00000009790	-	97	70.447	Ictidomys_tridecemlineatus
ENSXETG00000008434	sf1	58	81.818	ENSSTOG00000024353	-	77	71.897	Ictidomys_tridecemlineatus
ENSXETG00000008434	sf1	68	81.553	ENSJJAG00000011788	Sf1	97	69.545	Jaculus_jaculus
ENSXETG00000008434	sf1	64	82.713	ENSKMAG00000005854	sf1	78	73.025	Kryptolebias_marmoratus
ENSXETG00000008434	sf1	61	83.616	ENSLBEG00000019836	sf1	88	76.471	Labrus_bergylta
ENSXETG00000008434	sf1	66	75.300	ENSLACG00000018493	SF1	87	68.588	Latimeria_chalumnae
ENSXETG00000008434	sf1	64	87.027	ENSLOCG00000002130	sf1	82	70.609	Lepisosteus_oculatus
ENSXETG00000008434	sf1	68	81.598	ENSLAFG00000007201	SF1	96	71.619	Loxodonta_africana
ENSXETG00000008434	sf1	66	83.805	ENSMFAG00000033122	SF1	94	82.663	Macaca_fascicularis
ENSXETG00000008434	sf1	66	83.805	ENSMMUG00000022606	SF1	99	81.146	Macaca_mulatta
ENSXETG00000008434	sf1	66	83.805	ENSMNEG00000037901	SF1	94	82.663	Macaca_nemestrina
ENSXETG00000008434	sf1	68	81.752	ENSMLEG00000040706	SF1	92	84.496	Mandrillus_leucophaeus
ENSXETG00000008434	sf1	63	84.492	ENSMAMG00000001780	sf1	85	73.299	Mastacembelus_armatus
ENSXETG00000008434	sf1	62	85.675	ENSMZEG00005009196	sf1	85	72.326	Maylandia_zebra
ENSXETG00000008434	sf1	68	81.311	ENSMAUG00000014064	Sf1	93	68.689	Mesocricetus_auratus
ENSXETG00000008434	sf1	68	81.752	ENSMICG00000001202	SF1	99	79.625	Microcebus_murinus
ENSXETG00000008434	sf1	68	81.311	ENSMOCG00000022038	Sf1	93	68.689	Microtus_ochrogaster
ENSXETG00000008434	sf1	63	83.469	ENSMMOG00000020474	sf1	74	73.547	Mola_mola
ENSXETG00000008434	sf1	68	80.723	ENSMODG00000029407	SF1	94	79.224	Monodelphis_domestica
ENSXETG00000008434	sf1	62	84.958	ENSMALG00000020521	sf1	89	67.784	Monopterus_albus
ENSXETG00000008434	sf1	68	81.311	MGP_CAROLIEiJ_G0022607	Sf1	99	98.120	Mus_caroli
ENSXETG00000008434	sf1	68	81.311	ENSMUSG00000024949	Sf1	99	98.120	Mus_musculus
ENSXETG00000008434	sf1	68	81.311	MGP_PahariEiJ_G0014101	Sf1	99	98.120	Mus_pahari
ENSXETG00000008434	sf1	68	81.311	MGP_SPRETEiJ_G0023518	Sf1	99	98.120	Mus_spretus
ENSXETG00000008434	sf1	68	81.553	ENSMPUG00000012684	SF1	96	70.382	Mustela_putorius_furo
ENSXETG00000008434	sf1	72	76.376	ENSMLUG00000029800	-	76	75.506	Myotis_lucifugus
ENSXETG00000008434	sf1	68	81.553	ENSMLUG00000015217	-	97	69.545	Myotis_lucifugus
ENSXETG00000008434	sf1	68	81.553	ENSNGAG00000005550	Sf1	93	68.852	Nannospalax_galili
ENSXETG00000008434	sf1	62	86.351	ENSNBRG00000017606	sf1	86	71.354	Neolamprologus_brichardi
ENSXETG00000008434	sf1	66	84.021	ENSNLEG00000005236	-	94	82.872	Nomascus_leucogenys
ENSXETG00000008434	sf1	67	81.436	ENSMEUG00000013424	SF1	86	76.688	Notamacropus_eugenii
ENSXETG00000008434	sf1	60	81.471	ENSOPRG00000005008	SF1	84	76.303	Ochotona_princeps
ENSXETG00000008434	sf1	62	85.675	ENSONIG00000015728	sf1	85	72.326	Oreochromis_niloticus
ENSXETG00000008434	sf1	62	72.441	ENSOANG00000002909	SF1	91	75.335	Ornithorhynchus_anatinus
ENSXETG00000008434	sf1	68	81.553	ENSOCUG00000026486	SF1	93	69.717	Oryctolagus_cuniculus
ENSXETG00000008434	sf1	65	82.768	ENSORLG00000011853	sf1	85	72.402	Oryzias_latipes
ENSXETG00000008434	sf1	65	83.029	ENSORLG00020011834	sf1	85	72.572	Oryzias_latipes_hni
ENSXETG00000008434	sf1	62	86.150	ENSORLG00015012855	sf1	86	72.034	Oryzias_latipes_hsok
ENSXETG00000008434	sf1	64	84.533	ENSOMEG00000005210	sf1	85	73.459	Oryzias_melastigma
ENSXETG00000008434	sf1	68	81.553	ENSOGAG00000016196	SF1	88	69.391	Otolemur_garnettii
ENSXETG00000008434	sf1	68	81.553	ENSOARG00000009166	SF1	82	75.420	Ovis_aries
ENSXETG00000008434	sf1	66	84.021	ENSPPAG00000002799	-	99	81.295	Pan_paniscus
ENSXETG00000008434	sf1	68	81.752	ENSPPRG00000013566	SF1	97	70.656	Panthera_pardus
ENSXETG00000008434	sf1	68	81.553	ENSPTIG00000016141	SF1	78	80.505	Panthera_tigris_altaica
ENSXETG00000008434	sf1	70	80.806	ENSPTRG00000003846	SF1	99	80.046	Pan_troglodytes
ENSXETG00000008434	sf1	66	83.805	ENSPANG00000020754	SF1	94	82.663	Papio_anubis
ENSXETG00000008434	sf1	55	77.015	ENSPKIG00000012116	sf1	93	73.727	Paramormyrops_kingsleyae
ENSXETG00000008434	sf1	68	81.509	ENSPEMG00000010463	Sf1	93	68.689	Peromyscus_maniculatus_bairdii
ENSXETG00000008434	sf1	68	81.265	ENSPCIG00000018173	SF1	96	71.829	Phascolarctos_cinereus
ENSXETG00000008434	sf1	63	86.351	ENSPFOG00000013683	sf1	97	68.855	Poecilia_formosa
ENSXETG00000008434	sf1	62	85.635	ENSPLAG00000018076	sf1	87	72.774	Poecilia_latipinna
ENSXETG00000008434	sf1	62	85.635	ENSPMEG00000005726	sf1	89	72.945	Poecilia_mexicana
ENSXETG00000008434	sf1	62	84.807	ENSPREG00000004155	sf1	85	72.945	Poecilia_reticulata
ENSXETG00000008434	sf1	68	81.553	ENSPPYG00000003098	-	100	71.243	Pongo_abelii
ENSXETG00000008434	sf1	68	81.509	ENSPCAG00000013631	SF1	77	71.917	Procavia_capensis
ENSXETG00000008434	sf1	66	83.590	ENSPCOG00000027546	SF1	99	79.625	Propithecus_coquereli
ENSXETG00000008434	sf1	68	81.509	ENSPVAG00000016938	SF1	70	75.264	Pteropus_vampyrus
ENSXETG00000008434	sf1	62	85.675	ENSPNYG00000004673	sf1	85	72.326	Pundamilia_nyererei
ENSXETG00000008434	sf1	62	88.202	ENSPNAG00000013072	sf1	85	73.402	Pygocentrus_nattereri
ENSXETG00000008434	sf1	68	81.311	ENSRNOG00000021085	Sf1	97	69.388	Rattus_norvegicus
ENSXETG00000008434	sf1	58	93.353	ENSRBIG00000042818	SF1	88	86.327	Rhinopithecus_bieti
ENSXETG00000008434	sf1	71	79.108	ENSRROG00000045655	SF1	92	84.715	Rhinopithecus_roxellana
ENSXETG00000008434	sf1	73	37.500	YLR116W	MSL5	56	45.487	Saccharomyces_cerevisiae
ENSXETG00000008434	sf1	72	65.820	ENSSBOG00000022267	-	99	66.042	Saimiri_boliviensis_boliviensis
ENSXETG00000008434	sf1	56	94.688	ENSSHAG00000006841	SF1	78	80.806	Sarcophilus_harrisii
ENSXETG00000008434	sf1	66	83.505	ENSSFOG00015021978	sf1	85	71.966	Scleropages_formosus
ENSXETG00000008434	sf1	68	77.804	ENSSMAG00000007549	sf1	76	72.421	Scophthalmus_maximus
ENSXETG00000008434	sf1	56	90.244	ENSSDUG00000003903	sf1	84	73.050	Seriola_dumerili
ENSXETG00000008434	sf1	67	77.206	ENSSARG00000008180	SF1	89	72.845	Sorex_araneus
ENSXETG00000008434	sf1	67	80.383	ENSSPUG00000012907	SF1	86	70.802	Sphenodon_punctatus
ENSXETG00000008434	sf1	62	85.124	ENSSPAG00000019060	sf1	85	73.254	Stegastes_partitus
ENSXETG00000008434	sf1	68	81.553	ENSSSCG00000013021	SF1	97	69.545	Sus_scrofa
ENSXETG00000008434	sf1	84	58.889	ENSTNIG00000004820	sf1	90	63.636	Tetraodon_nigroviridis
ENSXETG00000008434	sf1	64	75.245	ENSTBEG00000013133	SF1	78	71.778	Tupaia_belangeri
ENSXETG00000008434	sf1	67	76.471	ENSTTRG00000008857	SF1	85	72.043	Tursiops_truncatus
ENSXETG00000008434	sf1	50	79.734	ENSUAMG00000011977	SF1	97	65.649	Ursus_americanus
ENSXETG00000008434	sf1	68	81.752	ENSUMAG00000007268	SF1	81	80.690	Ursus_maritimus
ENSXETG00000008434	sf1	68	81.553	ENSVVUG00000028585	SF1	86	75.420	Vulpes_vulpes
ENSXETG00000008434	sf1	62	85.915	ENSXCOG00000003704	sf1	95	72.366	Xiphophorus_couchianus
ENSXETG00000008434	sf1	62	85.083	ENSXMAG00000007822	sf1	85	72.991	Xiphophorus_maculatus