EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000008820 (Gene tree)
Gene ID: -
Gene Symbol: ddb1
Alias: -
Full Name: damage-specific DNA binding protein 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 18386 bases
Position: chrGL172942.1:1104936-1123321
Accession: XB-GENE-967908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000019381	CPSF_A	PF03178.15	3.3e-84	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000019381	-	3435	-	ENSXETP00000019381	1144 (aa)	-	F6VLN2

Gene Model

Click here to download ENSXETG00000008820's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000008820's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000008820	ddb1	100	93.182	ENSG00000167986	DDB1	100	96.364	Homo_sapiens
ENSXETG00000008820	ddb1	98	88.640	ENSAPOG00000005036	ddb1	100	88.900	Acanthochromis_polyacanthus
ENSXETG00000008820	ddb1	100	93.269	ENSAMEG00000016518	DDB1	100	93.269	Ailuropoda_melanoleuca
ENSXETG00000008820	ddb1	86	89.002	ENSACIG00000020624	ddb1	100	89.002	Amphilophus_citrinellus
ENSXETG00000008820	ddb1	100	88.724	ENSAOCG00000003066	ddb1	100	88.724	Amphiprion_ocellaris
ENSXETG00000008820	ddb1	100	88.549	ENSAPEG00000000092	ddb1	100	88.549	Amphiprion_percula
ENSXETG00000008820	ddb1	94	88.693	ENSATEG00000020571	ddb1	97	88.693	Anabas_testudineus
ENSXETG00000008820	ddb1	99	91.358	ENSAPLG00000007174	DDB1	99	91.358	Anas_platyrhynchos
ENSXETG00000008820	ddb1	100	92.657	ENSACAG00000017758	DDB1	100	92.657	Anolis_carolinensis
ENSXETG00000008820	ddb1	100	93.182	ENSANAG00000021878	DDB1	100	93.182	Aotus_nancymaae
ENSXETG00000008820	ddb1	100	88.636	ENSACLG00000012401	ddb1	100	88.636	Astatotilapia_calliptera
ENSXETG00000008820	ddb1	100	93.094	ENSBTAG00000021569	DDB1	93	93.094	Bos_taurus
ENSXETG00000008820	ddb1	100	37.031	WBGene00010890	ddb-1	100	37.031	Caenorhabditis_elegans
ENSXETG00000008820	ddb1	100	93.182	ENSCJAG00000019319	DDB1	100	93.182	Callithrix_jacchus
ENSXETG00000008820	ddb1	100	93.269	ENSCAFG00000016264	DDB1	100	93.269	Canis_familiaris
ENSXETG00000008820	ddb1	94	92.956	ENSCAFG00020012722	DDB1	99	92.956	Canis_lupus_dingo
ENSXETG00000008820	ddb1	100	93.094	ENSCHIG00000014969	DDB1	100	93.094	Capra_hircus
ENSXETG00000008820	ddb1	100	92.832	ENSTSYG00000008027	DDB1	100	92.832	Carlito_syrichta
ENSXETG00000008820	ddb1	98	93.054	ENSCAPG00000010786	DDB1	100	93.054	Cavia_aperea
ENSXETG00000008820	ddb1	100	93.094	ENSCPOG00000009956	DDB1	100	93.094	Cavia_porcellus
ENSXETG00000008820	ddb1	100	93.182	ENSCCAG00000035883	DDB1	100	93.182	Cebus_capucinus
ENSXETG00000008820	ddb1	100	90.744	ENSCATG00000044495	DDB1	100	90.744	Cercocebus_atys
ENSXETG00000008820	ddb1	100	93.182	ENSCLAG00000004126	DDB1	100	93.182	Chinchilla_lanigera
ENSXETG00000008820	ddb1	100	93.182	ENSCSAG00000006392	DDB1	100	93.182	Chlorocebus_sabaeus
ENSXETG00000008820	ddb1	88	87.970	ENSCHOG00000011377	DDB1	90	87.970	Choloepus_hoffmanni
ENSXETG00000008820	ddb1	100	92.657	ENSCPBG00000017728	DDB1	100	92.657	Chrysemys_picta_bellii
ENSXETG00000008820	ddb1	100	61.505	ENSCING00000007437	-	100	61.505	Ciona_intestinalis
ENSXETG00000008820	ddb1	94	59.375	ENSCSAVG00000004783	-	100	59.375	Ciona_savignyi
ENSXETG00000008820	ddb1	100	93.182	ENSCANG00000019948	DDB1	100	93.182	Colobus_angolensis_palliatus
ENSXETG00000008820	ddb1	100	93.269	ENSCGRG00001016599	Ddb1	100	93.269	Cricetulus_griseus_chok1gshd
ENSXETG00000008820	ddb1	100	93.269	ENSCGRG00000013427	Ddb1	100	93.269	Cricetulus_griseus_crigri
ENSXETG00000008820	ddb1	93	88.920	ENSCSEG00000012499	ddb1	100	87.576	Cynoglossus_semilaevis
ENSXETG00000008820	ddb1	94	88.579	ENSCVAG00000019531	ddb1	99	88.579	Cyprinodon_variegatus
ENSXETG00000008820	ddb1	100	86.038	ENSDARG00000074431	ddb1	100	86.038	Danio_rerio
ENSXETG00000008820	ddb1	94	92.864	ENSDNOG00000014884	DDB1	97	92.864	Dasypus_novemcinctus
ENSXETG00000008820	ddb1	84	95.475	ENSDORG00000000127	Ddb1	100	95.475	Dipodomys_ordii
ENSXETG00000008820	ddb1	100	60.261	FBgn0260962	pic	100	60.261	Drosophila_melanogaster
ENSXETG00000008820	ddb1	77	30.065	FBgn0024698	Cpsf160	67	30.065	Drosophila_melanogaster
ENSXETG00000008820	ddb1	66	96.063	ENSETEG00000001053	-	66	96.063	Echinops_telfairi
ENSXETG00000008820	ddb1	78	83.371	ENSEBUG00000014593	ddb1	97	83.371	Eptatretus_burgeri
ENSXETG00000008820	ddb1	100	93.094	ENSEASG00005008184	DDB1	100	93.094	Equus_asinus_asinus
ENSXETG00000008820	ddb1	100	93.182	ENSECAG00000012136	DDB1	100	93.182	Equus_caballus
ENSXETG00000008820	ddb1	85	89.799	ENSEEUG00000003194	DDB1	85	89.799	Erinaceus_europaeus
ENSXETG00000008820	ddb1	100	88.199	ENSELUG00000023868	ddb1	100	88.199	Esox_lucius
ENSXETG00000008820	ddb1	100	93.269	ENSFCAG00000029716	DDB1	100	93.269	Felis_catus
ENSXETG00000008820	ddb1	100	92.241	ENSFALG00000011981	DDB1	100	92.241	Ficedula_albicollis
ENSXETG00000008820	ddb1	100	93.182	ENSFDAG00000005128	DDB1	100	93.182	Fukomys_damarensis
ENSXETG00000008820	ddb1	90	89.535	ENSFHEG00000022133	ddb1	99	89.535	Fundulus_heteroclitus
ENSXETG00000008820	ddb1	79	92.308	ENSGMOG00000019386	ddb1	94	92.308	Gadus_morhua
ENSXETG00000008820	ddb1	100	92.308	ENSGALG00000042333	DDB1	100	92.308	Gallus_gallus
ENSXETG00000008820	ddb1	94	88.394	ENSGAFG00000013142	ddb1	99	88.394	Gambusia_affinis
ENSXETG00000008820	ddb1	96	87.671	ENSGACG00000017182	ddb1	100	87.671	Gasterosteus_aculeatus
ENSXETG00000008820	ddb1	95	92.647	ENSGAGG00000014124	DDB1	100	92.647	Gopherus_agassizii
ENSXETG00000008820	ddb1	100	93.182	ENSGGOG00000004052	DDB1	100	93.182	Gorilla_gorilla
ENSXETG00000008820	ddb1	100	88.636	ENSHBUG00000008873	ddb1	100	88.636	Haplochromis_burtoni
ENSXETG00000008820	ddb1	100	92.920	ENSHGLG00000018430	DDB1	100	92.920	Heterocephalus_glaber_female
ENSXETG00000008820	ddb1	100	92.133	ENSHGLG00100014475	DDB1	100	92.133	Heterocephalus_glaber_male
ENSXETG00000008820	ddb1	94	87.963	ENSHCOG00000018670	ddb1	98	87.963	Hippocampus_comes
ENSXETG00000008820	ddb1	100	88.636	ENSIPUG00000005612	DDB1	100	88.636	Ictalurus_punctatus
ENSXETG00000008820	ddb1	100	93.182	ENSSTOG00000007552	DDB1	100	93.182	Ictidomys_tridecemlineatus
ENSXETG00000008820	ddb1	100	93.007	ENSJJAG00000017769	Ddb1	100	93.007	Jaculus_jaculus
ENSXETG00000008820	ddb1	94	88.208	ENSKMAG00000002315	ddb1	99	88.208	Kryptolebias_marmoratus
ENSXETG00000008820	ddb1	84	88.785	ENSLBEG00000017065	ddb1	99	88.785	Labrus_bergylta
ENSXETG00000008820	ddb1	100	91.099	ENSLACG00000017611	DDB1	100	91.099	Latimeria_chalumnae
ENSXETG00000008820	ddb1	92	84.921	ENSLOCG00000000012	ddb1	100	84.921	Lepisosteus_oculatus
ENSXETG00000008820	ddb1	100	93.182	ENSLAFG00000011513	DDB1	100	93.182	Loxodonta_africana
ENSXETG00000008820	ddb1	100	93.182	ENSMFAG00000042035	DDB1	100	93.182	Macaca_fascicularis
ENSXETG00000008820	ddb1	99	93.128	ENSMMUG00000002691	DDB1	99	93.128	Macaca_mulatta
ENSXETG00000008820	ddb1	100	93.182	ENSMNEG00000031559	DDB1	100	93.182	Macaca_nemestrina
ENSXETG00000008820	ddb1	100	93.182	ENSMLEG00000044136	DDB1	100	93.182	Mandrillus_leucophaeus
ENSXETG00000008820	ddb1	100	88.724	ENSMAMG00000014372	ddb1	100	88.724	Mastacembelus_armatus
ENSXETG00000008820	ddb1	100	88.549	ENSMZEG00005013835	ddb1	100	88.549	Maylandia_zebra
ENSXETG00000008820	ddb1	94	91.744	ENSMGAG00000004990	DDB1	100	91.744	Meleagris_gallopavo
ENSXETG00000008820	ddb1	100	93.269	ENSMAUG00000012926	Ddb1	100	93.269	Mesocricetus_auratus
ENSXETG00000008820	ddb1	100	93.269	ENSMICG00000013703	DDB1	100	93.269	Microcebus_murinus
ENSXETG00000008820	ddb1	100	93.182	ENSMOCG00000020499	Ddb1	100	93.182	Microtus_ochrogaster
ENSXETG00000008820	ddb1	86	88.697	ENSMMOG00000001758	ddb1	100	88.697	Mola_mola
ENSXETG00000008820	ddb1	100	83.793	ENSMODG00000020353	DDB1	100	83.793	Monodelphis_domestica
ENSXETG00000008820	ddb1	100	88.549	ENSMALG00000014071	ddb1	100	88.549	Monopterus_albus
ENSXETG00000008820	ddb1	100	93.269	MGP_CAROLIEiJ_G0022695	Ddb1	100	93.269	Mus_caroli
ENSXETG00000008820	ddb1	100	93.182	ENSMUSG00000024740	Ddb1	100	93.182	Mus_musculus
ENSXETG00000008820	ddb1	100	93.269	MGP_PahariEiJ_G0014189	Ddb1	100	93.269	Mus_pahari
ENSXETG00000008820	ddb1	100	93.269	MGP_SPRETEiJ_G0023609	Ddb1	100	93.269	Mus_spretus
ENSXETG00000008820	ddb1	100	90.122	ENSMPUG00000014200	DDB1	100	90.122	Mustela_putorius_furo
ENSXETG00000008820	ddb1	100	93.182	ENSMLUG00000013232	DDB1	100	93.182	Myotis_lucifugus
ENSXETG00000008820	ddb1	100	93.007	ENSNGAG00000009384	Ddb1	100	93.007	Nannospalax_galili
ENSXETG00000008820	ddb1	100	88.724	ENSNBRG00000019581	ddb1	100	88.724	Neolamprologus_brichardi
ENSXETG00000008820	ddb1	100	90.138	ENSNLEG00000002022	DDB1	100	90.138	Nomascus_leucogenys
ENSXETG00000008820	ddb1	90	96.864	ENSMEUG00000001099	DDB1	93	96.864	Notamacropus_eugenii
ENSXETG00000008820	ddb1	85	95.050	ENSOPRG00000008254	DDB1	85	95.050	Ochotona_princeps
ENSXETG00000008820	ddb1	100	93.182	ENSODEG00000002419	DDB1	100	93.182	Octodon_degus
ENSXETG00000008820	ddb1	100	88.636	ENSONIG00000005804	ddb1	100	88.636	Oreochromis_niloticus
ENSXETG00000008820	ddb1	91	92.761	ENSOANG00000004897	DDB1	100	92.761	Ornithorhynchus_anatinus
ENSXETG00000008820	ddb1	100	93.182	ENSOCUG00000001667	DDB1	100	93.182	Oryctolagus_cuniculus
ENSXETG00000008820	ddb1	96	87.489	ENSORLG00000001399	ddb1	98	88.612	Oryzias_latipes
ENSXETG00000008820	ddb1	96	87.397	ENSORLG00020001277	ddb1	97	87.397	Oryzias_latipes_hni
ENSXETG00000008820	ddb1	94	88.508	ENSORLG00015002080	ddb1	99	88.508	Oryzias_latipes_hsok
ENSXETG00000008820	ddb1	96	87.012	ENSOMEG00000006181	ddb1	99	87.012	Oryzias_melastigma
ENSXETG00000008820	ddb1	100	93.182	ENSOGAG00000016103	DDB1	100	93.182	Otolemur_garnettii
ENSXETG00000008820	ddb1	99	93.168	ENSOARG00000011716	DDB1	98	93.168	Ovis_aries
ENSXETG00000008820	ddb1	100	93.182	ENSPPAG00000035343	DDB1	100	93.182	Pan_paniscus
ENSXETG00000008820	ddb1	100	93.269	ENSPPRG00000013300	DDB1	100	93.269	Panthera_pardus
ENSXETG00000008820	ddb1	98	93.232	ENSPTIG00000006909	DDB1	98	93.232	Panthera_tigris_altaica
ENSXETG00000008820	ddb1	100	93.182	ENSPTRG00000003737	DDB1	100	93.182	Pan_troglodytes
ENSXETG00000008820	ddb1	100	93.182	ENSPANG00000000242	DDB1	100	93.182	Papio_anubis
ENSXETG00000008820	ddb1	94	89.425	ENSPKIG00000019213	ddb1	94	89.425	Paramormyrops_kingsleyae
ENSXETG00000008820	ddb1	98	92.199	ENSPSIG00000013275	DDB1	100	92.199	Pelodiscus_sinensis
ENSXETG00000008820	ddb1	86	88.595	ENSPMGG00000021179	ddb1	100	88.595	Periophthalmus_magnuspinnatus
ENSXETG00000008820	ddb1	100	93.269	ENSPEMG00000012241	Ddb1	100	93.269	Peromyscus_maniculatus_bairdii
ENSXETG00000008820	ddb1	89	83.953	ENSPMAG00000008479	ddb1	100	83.953	Petromyzon_marinus
ENSXETG00000008820	ddb1	100	93.182	ENSPCIG00000002643	DDB1	100	93.182	Phascolarctos_cinereus
ENSXETG00000008820	ddb1	100	88.122	ENSPFOG00000002768	ddb1	100	88.122	Poecilia_formosa
ENSXETG00000008820	ddb1	100	87.937	ENSPLAG00000017227	ddb1	100	87.937	Poecilia_latipinna
ENSXETG00000008820	ddb1	100	87.937	ENSPMEG00000011398	ddb1	100	87.937	Poecilia_mexicana
ENSXETG00000008820	ddb1	94	88.415	ENSPREG00000004440	ddb1	98	88.415	Poecilia_reticulata
ENSXETG00000008820	ddb1	100	88.870	ENSPPYG00000003193	DDB1	100	88.870	Pongo_abelii
ENSXETG00000008820	ddb1	85	91.988	ENSPCAG00000011040	DDB1	85	91.988	Procavia_capensis
ENSXETG00000008820	ddb1	100	92.052	ENSPCOG00000015176	DDB1	100	92.052	Propithecus_coquereli
ENSXETG00000008820	ddb1	100	93.094	ENSPVAG00000003847	DDB1	100	93.094	Pteropus_vampyrus
ENSXETG00000008820	ddb1	94	89.322	ENSPNAG00000006635	ddb1	97	89.322	Pygocentrus_nattereri
ENSXETG00000008820	ddb1	100	93.269	ENSRNOG00000020715	Ddb1	100	93.269	Rattus_norvegicus
ENSXETG00000008820	ddb1	100	93.182	ENSRBIG00000033611	DDB1	100	93.182	Rhinopithecus_bieti
ENSXETG00000008820	ddb1	100	93.182	ENSRROG00000041407	DDB1	100	93.182	Rhinopithecus_roxellana
ENSXETG00000008820	ddb1	100	93.269	ENSSBOG00000019775	DDB1	100	93.269	Saimiri_boliviensis_boliviensis
ENSXETG00000008820	ddb1	94	90.968	ENSSHAG00000011600	DDB1	100	90.968	Sarcophilus_harrisii
ENSXETG00000008820	ddb1	94	89.454	ENSSFOG00015011151	ddb1	97	89.454	Scleropages_formosus
ENSXETG00000008820	ddb1	100	88.724	ENSSMAG00000009495	ddb1	100	88.724	Scophthalmus_maximus
ENSXETG00000008820	ddb1	100	88.636	ENSSDUG00000004642	ddb1	100	88.636	Seriola_dumerili
ENSXETG00000008820	ddb1	100	88.636	ENSSLDG00000015804	ddb1	100	88.636	Seriola_lalandi_dorsalis
ENSXETG00000008820	ddb1	70	96.226	ENSSARG00000003290	-	72	96.226	Sorex_araneus
ENSXETG00000008820	ddb1	100	92.657	ENSSPUG00000019338	DDB1	100	92.657	Sphenodon_punctatus
ENSXETG00000008820	ddb1	94	88.601	ENSSPAG00000009888	ddb1	99	88.601	Stegastes_partitus
ENSXETG00000008820	ddb1	100	92.308	ENSSSCG00000013094	DDB1	100	92.308	Sus_scrofa
ENSXETG00000008820	ddb1	100	92.395	ENSTGUG00000006414	DDB1	100	92.395	Taeniopygia_guttata
ENSXETG00000008820	ddb1	94	87.744	ENSTRUG00000016682	ddb1	98	87.744	Takifugu_rubripes
ENSXETG00000008820	ddb1	88	82.505	ENSTNIG00000009565	ddb1	99	82.505	Tetraodon_nigroviridis
ENSXETG00000008820	ddb1	92	87.922	ENSTTRG00000011055	DDB1	94	87.922	Tursiops_truncatus
ENSXETG00000008820	ddb1	94	92.956	ENSUAMG00000017793	DDB1	93	92.956	Ursus_americanus
ENSXETG00000008820	ddb1	94	92.956	ENSUMAG00000011788	DDB1	98	92.956	Ursus_maritimus
ENSXETG00000008820	ddb1	90	95.098	ENSVPAG00000007963	DDB1	92	95.098	Vicugna_pacos
ENSXETG00000008820	ddb1	100	93.269	ENSVVUG00000004987	DDB1	100	93.269	Vulpes_vulpes
ENSXETG00000008820	ddb1	86	88.493	ENSXCOG00000013956	ddb1	100	88.493	Xiphophorus_couchianus
ENSXETG00000008820	ddb1	94	88.301	ENSXMAG00000000022	ddb1	99	88.301	Xiphophorus_maculatus