EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000008954 (Gene tree)
Gene ID: -
Gene Symbol: srsf1
Alias: -
Full Name: Xenopus tropicalis serine/arginine-rich splicing factor 1 (srsf1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 4095 bases
Position: chrGL173152.1:129492-133586
Accession: NM_001006918
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000019608	RRM_1	PF00076.22	1.1e-33	1	2
ENSXETP00000019608	RRM_1	PF00076.22	1.1e-33	2	2
ENSXETP00000058636	RRM_1	PF00076.22	1.1e-33	1	2
ENSXETP00000058636	RRM_1	PF00076.22	1.1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000062041	-	1961	-	ENSXETP00000058636	270 (aa)	-	F6YAT2
ENSXETT00000019608	-	2036	-	ENSXETP00000019608	267 (aa)	-	Q6DII2

Gene Model

Click here to download ENSXETG00000008954's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000008954's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000008954	srsf1	67	46.154	ENSXETG00000017937	srsf5a	67	45.161
ENSXETG00000008954	srsf1	79	62.441	ENSXETG00000026940	srsf9	83	71.277
ENSXETG00000008954	srsf1	69	41.791	ENSXETG00000002211	srsf5	70	39.604

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000008954	srsf1	100	91.386	ENSG00000136450	SRSF1	100	100.000	Homo_sapiens
ENSXETG00000008954	srsf1	79	83.962	ENSAPOG00000002748	-	78	91.623	Acanthochromis_polyacanthus
ENSXETG00000008954	srsf1	81	87.963	ENSAPOG00000008542	-	80	89.529	Acanthochromis_polyacanthus
ENSXETG00000008954	srsf1	100	89.139	ENSAMEG00000002635	SRSF1	100	89.139	Ailuropoda_melanoleuca
ENSXETG00000008954	srsf1	79	83.962	ENSACIG00000008091	srsf1a	83	92.632	Amphilophus_citrinellus
ENSXETG00000008954	srsf1	79	84.434	ENSAOCG00000010671	-	83	92.147	Amphiprion_ocellaris
ENSXETG00000008954	srsf1	81	87.963	ENSAOCG00000000337	-	82	87.500	Amphiprion_ocellaris
ENSXETG00000008954	srsf1	79	84.434	ENSAPEG00000009915	-	83	92.147	Amphiprion_percula
ENSXETG00000008954	srsf1	81	87.963	ENSAPEG00000023352	-	81	87.500	Amphiprion_percula
ENSXETG00000008954	srsf1	79	84.434	ENSATEG00000022403	-	77	92.147	Anabas_testudineus
ENSXETG00000008954	srsf1	83	79.279	ENSATEG00000021567	-	81	90.722	Anabas_testudineus
ENSXETG00000008954	srsf1	100	91.386	ENSACAG00000005542	-	100	95.968	Anolis_carolinensis
ENSXETG00000008954	srsf1	72	72.680	ENSANAG00000025417	-	75	72.251	Aotus_nancymaae
ENSXETG00000008954	srsf1	99	91.321	ENSANAG00000020583	-	99	98.611	Aotus_nancymaae
ENSXETG00000008954	srsf1	95	88.142	ENSAMXG00000035996	srsf1a	79	90.452	Astyanax_mexicanus
ENSXETG00000008954	srsf1	66	84.466	ENSAMXG00000024373	-	94	84.058	Astyanax_mexicanus
ENSXETG00000008954	srsf1	100	91.386	ENSBTAG00000014766	SRSF1	100	95.968	Bos_taurus
ENSXETG00000008954	srsf1	81	79.535	ENSCJAG00000008111	-	88	83.756	Callithrix_jacchus
ENSXETG00000008954	srsf1	99	91.321	ENSCJAG00000041713	-	99	98.611	Callithrix_jacchus
ENSXETG00000008954	srsf1	99	91.321	ENSCAFG00000017430	SRSF1	97	95.935	Canis_familiaris
ENSXETG00000008954	srsf1	99	91.321	ENSCAFG00020025632	-	97	95.935	Canis_lupus_dingo
ENSXETG00000008954	srsf1	100	91.386	ENSCHIG00000010787	SRSF1	100	95.968	Capra_hircus
ENSXETG00000008954	srsf1	99	91.321	ENSTSYG00000013899	-	99	98.611	Carlito_syrichta
ENSXETG00000008954	srsf1	100	91.386	ENSCPOG00000032681	-	100	95.968	Cavia_porcellus
ENSXETG00000008954	srsf1	100	91.386	ENSCCAG00000029484	-	99	98.611	Cebus_capucinus
ENSXETG00000008954	srsf1	99	91.321	ENSCATG00000042294	-	99	98.611	Cercocebus_atys
ENSXETG00000008954	srsf1	100	91.386	ENSCLAG00000014707	-	100	95.968	Chinchilla_lanigera
ENSXETG00000008954	srsf1	99	90.566	ENSCSAG00000005642	-	97	95.122	Chlorocebus_sabaeus
ENSXETG00000008954	srsf1	100	91.386	ENSCHOG00000001899	SRSF1	100	95.968	Choloepus_hoffmanni
ENSXETG00000008954	srsf1	100	91.760	ENSCPBG00000009851	-	100	96.371	Chrysemys_picta_bellii
ENSXETG00000008954	srsf1	99	91.321	ENSCANG00000029726	-	99	98.611	Colobus_angolensis_palliatus
ENSXETG00000008954	srsf1	99	91.321	ENSCGRG00001000670	Srsf1	97	95.935	Cricetulus_griseus_chok1gshd
ENSXETG00000008954	srsf1	100	91.386	ENSCGRG00000005590	Srsf1	100	95.968	Cricetulus_griseus_crigri
ENSXETG00000008954	srsf1	81	90.698	ENSCSEG00000009973	-	81	90.233	Cynoglossus_semilaevis
ENSXETG00000008954	srsf1	79	86.792	ENSCSEG00000014272	-	81	89.840	Cynoglossus_semilaevis
ENSXETG00000008954	srsf1	79	83.491	ENSCVAG00000005458	-	91	84.699	Cyprinodon_variegatus
ENSXETG00000008954	srsf1	79	84.434	ENSCVAG00000018617	-	78	92.147	Cyprinodon_variegatus
ENSXETG00000008954	srsf1	89	90.196	ENSDARG00000057691	srsf1a	99	91.500	Danio_rerio
ENSXETG00000008954	srsf1	99	90.530	ENSDARG00000017843	srsf1b	99	95.122	Danio_rerio
ENSXETG00000008954	srsf1	99	91.321	ENSDNOG00000011737	-	97	95.935	Dasypus_novemcinctus
ENSXETG00000008954	srsf1	100	91.386	ENSDORG00000015082	Srsf1	100	95.968	Dipodomys_ordii
ENSXETG00000008954	srsf1	76	84.729	ENSETEG00000005349	-	63	89.674	Echinops_telfairi
ENSXETG00000008954	srsf1	99	91.321	ENSEASG00005002922	-	97	95.935	Equus_asinus_asinus
ENSXETG00000008954	srsf1	100	91.386	ENSECAG00000016654	SRSF1	100	95.968	Equus_caballus
ENSXETG00000008954	srsf1	76	88.670	ENSEEUG00000009255	-	63	94.565	Erinaceus_europaeus
ENSXETG00000008954	srsf1	80	85.446	ENSELUG00000021646	srsf1a	77	88.601	Esox_lucius
ENSXETG00000008954	srsf1	99	91.321	ENSFCAG00000002250	-	97	95.935	Felis_catus
ENSXETG00000008954	srsf1	99	76.604	ENSFALG00000005062	-	97	82.114	Ficedula_albicollis
ENSXETG00000008954	srsf1	100	91.386	ENSFDAG00000010646	-	100	95.968	Fukomys_damarensis
ENSXETG00000008954	srsf1	79	84.434	ENSFHEG00000003174	srsf1a	83	92.147	Fundulus_heteroclitus
ENSXETG00000008954	srsf1	82	88.739	ENSGMOG00000014787	-	80	88.770	Gadus_morhua
ENSXETG00000008954	srsf1	100	91.760	ENSGALG00000005525	SRSF1	100	96.371	Gallus_gallus
ENSXETG00000008954	srsf1	81	79.167	ENSGACG00000020621	srsf1b	80	86.387	Gasterosteus_aculeatus
ENSXETG00000008954	srsf1	99	91.698	ENSGAGG00000022965	-	97	96.341	Gopherus_agassizii
ENSXETG00000008954	srsf1	99	91.321	ENSGGOG00000004386	SRSF1	99	98.611	Gorilla_gorilla
ENSXETG00000008954	srsf1	79	83.962	ENSHBUG00000016788	srsf1a	84	89.950	Haplochromis_burtoni
ENSXETG00000008954	srsf1	88	90.171	ENSHGLG00000000669	-	100	95.349	Heterocephalus_glaber_female
ENSXETG00000008954	srsf1	88	90.171	ENSHGLG00000000600	-	100	95.349	Heterocephalus_glaber_female
ENSXETG00000008954	srsf1	100	91.386	ENSHGLG00100016906	-	100	95.968	Heterocephalus_glaber_male
ENSXETG00000008954	srsf1	79	83.491	ENSHCOG00000018918	srsf1a	77	85.279	Hippocampus_comes
ENSXETG00000008954	srsf1	100	89.888	ENSIPUG00000008750	srsf1b	100	94.737	Ictalurus_punctatus
ENSXETG00000008954	srsf1	94	90.079	ENSIPUG00000017039	srsf1a	79	90.452	Ictalurus_punctatus
ENSXETG00000008954	srsf1	100	91.386	ENSSTOG00000000243	-	100	95.968	Ictidomys_tridecemlineatus
ENSXETG00000008954	srsf1	100	91.386	ENSJJAG00000000102	-	100	95.968	Jaculus_jaculus
ENSXETG00000008954	srsf1	79	84.434	ENSKMAG00000019232	srsf1a	78	88.021	Kryptolebias_marmoratus
ENSXETG00000008954	srsf1	81	79.167	ENSLBEG00000015294	-	80	82.500	Labrus_bergylta
ENSXETG00000008954	srsf1	79	84.434	ENSLBEG00000020864	-	83	92.147	Labrus_bergylta
ENSXETG00000008954	srsf1	80	86.385	ENSLACG00000014160	srsf1a	80	85.377	Latimeria_chalumnae
ENSXETG00000008954	srsf1	100	90.262	ENSLOCG00000005994	srsf1a	100	95.547	Lepisosteus_oculatus
ENSXETG00000008954	srsf1	100	91.386	ENSLAFG00000025743	SRSF1	100	95.968	Loxodonta_africana
ENSXETG00000008954	srsf1	100	91.386	ENSMFAG00000040003	-	99	98.611	Macaca_fascicularis
ENSXETG00000008954	srsf1	100	86.517	ENSMMUG00000003260	-	95	90.306	Macaca_mulatta
ENSXETG00000008954	srsf1	99	91.321	ENSMMUG00000004725	SRSF1	99	98.611	Macaca_mulatta
ENSXETG00000008954	srsf1	99	91.321	ENSMNEG00000027680	-	99	98.611	Macaca_nemestrina
ENSXETG00000008954	srsf1	100	86.142	ENSMNEG00000015983	-	78	89.848	Macaca_nemestrina
ENSXETG00000008954	srsf1	100	91.386	ENSMLEG00000040509	SRSF1	100	95.968	Mandrillus_leucophaeus
ENSXETG00000008954	srsf1	100	84.270	ENSMLEG00000015243	-	77	90.104	Mandrillus_leucophaeus
ENSXETG00000008954	srsf1	81	86.111	ENSMAMG00000019691	-	81	90.306	Mastacembelus_armatus
ENSXETG00000008954	srsf1	71	92.670	ENSMAMG00000019687	-	80	92.670	Mastacembelus_armatus
ENSXETG00000008954	srsf1	79	84.434	ENSMAMG00000018454	-	78	92.147	Mastacembelus_armatus
ENSXETG00000008954	srsf1	100	91.386	ENSMAUG00000021845	Srsf1	100	95.968	Mesocricetus_auratus
ENSXETG00000008954	srsf1	99	91.321	ENSMICG00000013639	-	99	98.611	Microcebus_murinus
ENSXETG00000008954	srsf1	100	91.386	ENSMOCG00000001996	Srsf1	100	95.968	Microtus_ochrogaster
ENSXETG00000008954	srsf1	79	83.962	ENSMMOG00000014354	srsf1a	83	92.147	Mola_mola
ENSXETG00000008954	srsf1	76	90.148	ENSMODG00000014781	-	63	94.595	Monodelphis_domestica
ENSXETG00000008954	srsf1	79	83.962	ENSMALG00000017129	-	75	91.623	Monopterus_albus
ENSXETG00000008954	srsf1	73	79.798	ENSMALG00000007763	-	79	81.152	Monopterus_albus
ENSXETG00000008954	srsf1	100	91.386	MGP_CAROLIEiJ_G0016943	Srsf1	100	95.968	Mus_caroli
ENSXETG00000008954	srsf1	100	91.386	ENSMUSG00000018379	Srsf1	100	95.968	Mus_musculus
ENSXETG00000008954	srsf1	100	91.386	MGP_PahariEiJ_G0018074	Srsf1	100	95.968	Mus_pahari
ENSXETG00000008954	srsf1	100	91.386	MGP_SPRETEiJ_G0017790	Srsf1	100	95.968	Mus_spretus
ENSXETG00000008954	srsf1	100	91.386	ENSMPUG00000015369	SRSF1	100	95.968	Mustela_putorius_furo
ENSXETG00000008954	srsf1	100	91.386	ENSMLUG00000011040	SRSF1	100	95.968	Myotis_lucifugus
ENSXETG00000008954	srsf1	73	92.893	ENSMLUG00000023995	-	79	93.194	Myotis_lucifugus
ENSXETG00000008954	srsf1	100	91.386	ENSNGAG00000011395	Srsf1	100	95.968	Nannospalax_galili
ENSXETG00000008954	srsf1	100	74.906	ENSNBRG00000008041	srsf1b	80	82.199	Neolamprologus_brichardi
ENSXETG00000008954	srsf1	99	91.321	ENSNLEG00000008088	-	99	98.611	Nomascus_leucogenys
ENSXETG00000008954	srsf1	54	86.207	ENSMEUG00000002783	-	100	92.913	Notamacropus_eugenii
ENSXETG00000008954	srsf1	76	88.614	ENSOPRG00000001234	-	100	94.536	Ochotona_princeps
ENSXETG00000008954	srsf1	100	91.011	ENSODEG00000011481	-	100	95.565	Octodon_degus
ENSXETG00000008954	srsf1	96	83.594	ENSONIG00000004860	-	81	89.286	Oreochromis_niloticus
ENSXETG00000008954	srsf1	79	83.962	ENSONIG00000013160	-	77	92.632	Oreochromis_niloticus
ENSXETG00000008954	srsf1	100	64.945	ENSOCUG00000010894	-	77	73.545	Oryctolagus_cuniculus
ENSXETG00000008954	srsf1	79	84.434	ENSORLG00000004580	srsf1a	78	92.147	Oryzias_latipes
ENSXETG00000008954	srsf1	79	84.434	ENSORLG00020009456	srsf1a	83	92.147	Oryzias_latipes_hni
ENSXETG00000008954	srsf1	79	84.434	ENSORLG00015014384	srsf1a	83	92.147	Oryzias_latipes_hsok
ENSXETG00000008954	srsf1	73	81.538	ENSOMEG00000004106	srsf1a	71	90.230	Oryzias_melastigma
ENSXETG00000008954	srsf1	100	91.386	ENSOGAG00000025950	-	100	95.968	Otolemur_garnettii
ENSXETG00000008954	srsf1	90	95.868	ENSOARG00000008323	SRSF1	100	95.868	Ovis_aries
ENSXETG00000008954	srsf1	100	91.386	ENSPPAG00000043403	-	99	98.611	Pan_paniscus
ENSXETG00000008954	srsf1	100	91.386	ENSPPRG00000004238	-	100	95.968	Panthera_pardus
ENSXETG00000008954	srsf1	99	91.321	ENSPTRG00000049077	SRSF1	99	98.611	Pan_troglodytes
ENSXETG00000008954	srsf1	99	91.321	ENSPANG00000022305	-	99	98.611	Papio_anubis
ENSXETG00000008954	srsf1	99	70.566	ENSPANG00000030275	-	97	70.566	Papio_anubis
ENSXETG00000008954	srsf1	80	84.507	ENSPKIG00000007204	srsf1a	83	94.764	Paramormyrops_kingsleyae
ENSXETG00000008954	srsf1	100	89.888	ENSPKIG00000012857	srsf1b	100	95.565	Paramormyrops_kingsleyae
ENSXETG00000008954	srsf1	100	86.245	ENSPSIG00000009000	-	100	90.400	Pelodiscus_sinensis
ENSXETG00000008954	srsf1	97	77.519	ENSPMGG00000005467	-	77	90.503	Periophthalmus_magnuspinnatus
ENSXETG00000008954	srsf1	79	85.849	ENSPMGG00000013112	-	82	89.840	Periophthalmus_magnuspinnatus
ENSXETG00000008954	srsf1	100	91.386	ENSPEMG00000021416	Srsf1	100	95.968	Peromyscus_maniculatus_bairdii
ENSXETG00000008954	srsf1	100	92.135	ENSPCIG00000006076	-	100	95.984	Phascolarctos_cinereus
ENSXETG00000008954	srsf1	81	82.488	ENSPFOG00000018325	-	76	81.690	Poecilia_formosa
ENSXETG00000008954	srsf1	81	82.870	ENSPLAG00000008416	srsf1b	79	87.113	Poecilia_latipinna
ENSXETG00000008954	srsf1	53	78.873	ENSPMEG00000014312	-	98	85.950	Poecilia_mexicana
ENSXETG00000008954	srsf1	53	78.873	ENSPMEG00000020607	-	98	85.950	Poecilia_mexicana
ENSXETG00000008954	srsf1	81	82.870	ENSPMEG00000002388	-	79	87.113	Poecilia_mexicana
ENSXETG00000008954	srsf1	79	84.434	ENSPREG00000009667	srsf1a	78	92.147	Poecilia_reticulata
ENSXETG00000008954	srsf1	100	91.386	ENSPPYG00000008240	SRSF1	100	95.968	Pongo_abelii
ENSXETG00000008954	srsf1	100	91.386	ENSPCAG00000005199	SRSF1	100	95.968	Procavia_capensis
ENSXETG00000008954	srsf1	100	91.386	ENSPCOG00000023654	-	99	98.611	Propithecus_coquereli
ENSXETG00000008954	srsf1	82	72.018	ENSPCOG00000025736	-	95	77.368	Propithecus_coquereli
ENSXETG00000008954	srsf1	70	100.000	ENSPVAG00000000519	-	75	100.000	Pteropus_vampyrus
ENSXETG00000008954	srsf1	95	86.561	ENSPNAG00000022241	srsf1a	78	93.717	Pygocentrus_nattereri
ENSXETG00000008954	srsf1	100	88.390	ENSPNAG00000014601	srsf1b	100	96.296	Pygocentrus_nattereri
ENSXETG00000008954	srsf1	100	91.386	ENSRNOG00000050323	Srsf1	100	95.968	Rattus_norvegicus
ENSXETG00000008954	srsf1	99	91.321	ENSRBIG00000034445	-	99	98.611	Rhinopithecus_bieti
ENSXETG00000008954	srsf1	100	91.386	ENSRROG00000041506	-	99	98.611	Rhinopithecus_roxellana
ENSXETG00000008954	srsf1	100	91.386	ENSSBOG00000025377	-	99	98.611	Saimiri_boliviensis_boliviensis
ENSXETG00000008954	srsf1	100	92.135	ENSSHAG00000002552	-	100	95.984	Sarcophilus_harrisii
ENSXETG00000008954	srsf1	89	95.918	ENSSFOG00015004800	srsf1a	99	95.918	Scleropages_formosus
ENSXETG00000008954	srsf1	79	83.962	ENSSMAG00000007018	-	78	91.623	Scophthalmus_maximus
ENSXETG00000008954	srsf1	94	86.508	ENSSMAG00000009719	-	80	85.784	Scophthalmus_maximus
ENSXETG00000008954	srsf1	100	72.659	ENSSDUG00000003929	-	84	80.500	Seriola_dumerili
ENSXETG00000008954	srsf1	79	84.434	ENSSDUG00000011303	-	83	92.147	Seriola_dumerili
ENSXETG00000008954	srsf1	81	75.576	ENSSLDG00000016868	-	78	82.812	Seriola_lalandi_dorsalis
ENSXETG00000008954	srsf1	79	84.434	ENSSLDG00000010543	-	78	92.147	Seriola_lalandi_dorsalis
ENSXETG00000008954	srsf1	95	70.980	ENSSLDG00000016895	-	78	84.409	Seriola_lalandi_dorsalis
ENSXETG00000008954	srsf1	76	88.670	ENSSARG00000010949	-	63	94.565	Sorex_araneus
ENSXETG00000008954	srsf1	99	91.698	ENSSPUG00000000804	-	97	96.341	Sphenodon_punctatus
ENSXETG00000008954	srsf1	81	90.278	ENSSPAG00000014152	-	81	89.815	Stegastes_partitus
ENSXETG00000008954	srsf1	79	84.906	ENSSPAG00000022562	-	78	91.667	Stegastes_partitus
ENSXETG00000008954	srsf1	100	91.386	ENSSSCG00000017626	-	100	95.968	Sus_scrofa
ENSXETG00000008954	srsf1	76	89.163	ENSTGUG00000008416	-	100	95.109	Taeniopygia_guttata
ENSXETG00000008954	srsf1	79	83.491	ENSTRUG00000003691	srsf1a	78	91.099	Takifugu_rubripes
ENSXETG00000008954	srsf1	79	83.491	ENSTNIG00000016223	srsf1a	77	91.099	Tetraodon_nigroviridis
ENSXETG00000008954	srsf1	76	85.222	ENSTBEG00000015378	-	63	90.761	Tupaia_belangeri
ENSXETG00000008954	srsf1	76	88.614	ENSTTRG00000007310	SRSF1	100	94.536	Tursiops_truncatus
ENSXETG00000008954	srsf1	100	91.386	ENSUAMG00000009858	SRSF1	100	95.968	Ursus_americanus
ENSXETG00000008954	srsf1	99	91.321	ENSUMAG00000000455	-	97	95.935	Ursus_maritimus
ENSXETG00000008954	srsf1	100	91.011	ENSVPAG00000010094	SRSF1	100	95.565	Vicugna_pacos
ENSXETG00000008954	srsf1	99	91.321	ENSVVUG00000011882	-	97	95.935	Vulpes_vulpes
ENSXETG00000008954	srsf1	79	84.434	ENSXMAG00000011766	srsf1a	78	92.147	Xiphophorus_maculatus