EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000009004 (Gene tree)
Gene ID: -
Gene Symbol: lsm1
Alias: -
Full Name: Xenopus tropicalis LSM1 homolog%2C mRNA degradation associated (lsm1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 7115 bases
Position: chrGL172670.1:3445494-3452608
Accession: NM_001011191
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000019720	LSM	PF01423.22	3.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000019720	-	815	-	ENSXETP00000019720	137 (aa)	-	F7B5H3

Gene Model

Click here to download ENSXETG00000009004's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000009004's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000009004	lsm1	64	34.091	ENSXETG00000021829	lsm8	87	34.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000009004	lsm1	100	92.701	ENSG00000175324	LSM1	100	92.701	Homo_sapiens
ENSXETG00000009004	lsm1	100	81.022	ENSAPOG00000010833	lsm1	100	81.022	Acanthochromis_polyacanthus
ENSXETG00000009004	lsm1	100	92.701	ENSAMEG00000011141	LSM1	100	92.701	Ailuropoda_melanoleuca
ENSXETG00000009004	lsm1	59	88.889	ENSACIG00000019593	lsm1	64	88.889	Amphilophus_citrinellus
ENSXETG00000009004	lsm1	100	81.022	ENSAOCG00000017096	lsm1	100	81.022	Amphiprion_ocellaris
ENSXETG00000009004	lsm1	100	81.022	ENSAOCG00000017997	-	100	81.022	Amphiprion_ocellaris
ENSXETG00000009004	lsm1	100	81.022	ENSAPEG00000011669	lsm1	100	81.022	Amphiprion_percula
ENSXETG00000009004	lsm1	100	80.292	ENSATEG00000022266	lsm1	100	80.292	Anabas_testudineus
ENSXETG00000009004	lsm1	100	92.701	ENSANAG00000027785	LSM1	100	92.701	Aotus_nancymaae
ENSXETG00000009004	lsm1	100	80.292	ENSACLG00000011400	lsm1	100	80.292	Astatotilapia_calliptera
ENSXETG00000009004	lsm1	100	83.212	ENSAMXG00000005441	lsm1	100	83.212	Astyanax_mexicanus
ENSXETG00000009004	lsm1	100	91.971	ENSBTAG00000001612	LSM1	100	91.971	Bos_taurus
ENSXETG00000009004	lsm1	88	51.639	WBGene00003076	lsm-1	90	51.639	Caenorhabditis_elegans
ENSXETG00000009004	lsm1	100	91.971	ENSCJAG00000048015	LSM1	100	91.971	Callithrix_jacchus
ENSXETG00000009004	lsm1	100	92.701	ENSCAFG00000006113	LSM1	100	92.701	Canis_familiaris
ENSXETG00000009004	lsm1	100	92.701	ENSCAFG00020001822	LSM1	100	92.701	Canis_lupus_dingo
ENSXETG00000009004	lsm1	100	92.701	ENSCHIG00000013194	LSM1	100	92.701	Capra_hircus
ENSXETG00000009004	lsm1	100	92.701	ENSTSYG00000010394	LSM1	100	92.701	Carlito_syrichta
ENSXETG00000009004	lsm1	100	92.701	ENSCPOG00000032671	LSM1	100	92.701	Cavia_porcellus
ENSXETG00000009004	lsm1	100	92.701	ENSCCAG00000037171	LSM1	100	92.701	Cebus_capucinus
ENSXETG00000009004	lsm1	100	92.701	ENSCATG00000020377	LSM1	100	92.701	Cercocebus_atys
ENSXETG00000009004	lsm1	100	91.241	ENSCLAG00000001137	LSM1	100	91.241	Chinchilla_lanigera
ENSXETG00000009004	lsm1	100	92.701	ENSCSAG00000015485	LSM1	100	92.701	Chlorocebus_sabaeus
ENSXETG00000009004	lsm1	100	91.971	ENSCHOG00000006030	LSM1	100	91.971	Choloepus_hoffmanni
ENSXETG00000009004	lsm1	96	86.260	ENSCPBG00000006569	LSM1	86	86.260	Chrysemys_picta_bellii
ENSXETG00000009004	lsm1	99	66.912	ENSCING00000013536	-	99	66.912	Ciona_intestinalis
ENSXETG00000009004	lsm1	100	92.701	ENSCANG00000019173	LSM1	100	92.701	Colobus_angolensis_palliatus
ENSXETG00000009004	lsm1	100	91.971	ENSCGRG00001024560	-	100	91.971	Cricetulus_griseus_chok1gshd
ENSXETG00000009004	lsm1	80	75.652	ENSCGRG00001002259	-	97	75.652	Cricetulus_griseus_chok1gshd
ENSXETG00000009004	lsm1	80	75.652	ENSCGRG00000013603	-	97	75.652	Cricetulus_griseus_crigri
ENSXETG00000009004	lsm1	100	91.971	ENSCGRG00000006554	-	100	91.971	Cricetulus_griseus_crigri
ENSXETG00000009004	lsm1	100	79.562	ENSCSEG00000010570	lsm1	92	79.562	Cynoglossus_semilaevis
ENSXETG00000009004	lsm1	100	78.832	ENSCSEG00000008319	lsm1	92	78.832	Cynoglossus_semilaevis
ENSXETG00000009004	lsm1	100	79.562	ENSCVAG00000003871	lsm1	100	79.562	Cyprinodon_variegatus
ENSXETG00000009004	lsm1	100	82.482	ENSDARG00000043177	lsm1	100	82.482	Danio_rerio
ENSXETG00000009004	lsm1	100	86.861	ENSDNOG00000030989	-	100	86.861	Dasypus_novemcinctus
ENSXETG00000009004	lsm1	90	72.358	ENSDNOG00000046620	-	100	72.358	Dasypus_novemcinctus
ENSXETG00000009004	lsm1	100	92.701	ENSDNOG00000046387	-	100	92.701	Dasypus_novemcinctus
ENSXETG00000009004	lsm1	100	91.971	ENSDNOG00000032911	-	100	91.971	Dasypus_novemcinctus
ENSXETG00000009004	lsm1	100	92.701	ENSDORG00000028172	Lsm1	100	92.701	Dipodomys_ordii
ENSXETG00000009004	lsm1	93	63.281	FBgn0261067	LSm1	91	63.281	Drosophila_melanogaster
ENSXETG00000009004	lsm1	100	91.241	ENSEASG00005016677	LSM1	100	91.241	Equus_asinus_asinus
ENSXETG00000009004	lsm1	100	91.241	ENSECAG00000010461	LSM1	100	91.241	Equus_caballus
ENSXETG00000009004	lsm1	100	67.153	ENSEEUG00000015181	LSM1	100	67.153	Erinaceus_europaeus
ENSXETG00000009004	lsm1	100	78.832	ENSELUG00000023374	lsm1	100	78.832	Esox_lucius
ENSXETG00000009004	lsm1	100	81.022	ENSELUG00000002322	lsm1	100	81.022	Esox_lucius
ENSXETG00000009004	lsm1	100	92.701	ENSFCAG00000039335	LSM1	100	92.701	Felis_catus
ENSXETG00000009004	lsm1	89	90.164	ENSFALG00000006723	LSM1	100	90.164	Ficedula_albicollis
ENSXETG00000009004	lsm1	100	92.701	ENSFDAG00000007658	LSM1	100	92.701	Fukomys_damarensis
ENSXETG00000009004	lsm1	100	79.562	ENSFHEG00000009556	lsm1	100	79.562	Fundulus_heteroclitus
ENSXETG00000009004	lsm1	100	78.102	ENSGMOG00000016651	lsm1	98	78.102	Gadus_morhua
ENSXETG00000009004	lsm1	100	89.051	ENSGALG00000003245	LSM1	100	89.051	Gallus_gallus
ENSXETG00000009004	lsm1	100	79.562	ENSGAFG00000011355	lsm1	100	79.562	Gambusia_affinis
ENSXETG00000009004	lsm1	100	80.292	ENSGACG00000011763	lsm1	98	80.292	Gasterosteus_aculeatus
ENSXETG00000009004	lsm1	100	92.701	ENSGAGG00000024065	LSM1	100	92.701	Gopherus_agassizii
ENSXETG00000009004	lsm1	100	92.701	ENSGGOG00000022658	LSM1	100	92.701	Gorilla_gorilla
ENSXETG00000009004	lsm1	100	80.292	ENSHBUG00000010897	lsm1	100	80.292	Haplochromis_burtoni
ENSXETG00000009004	lsm1	100	72.993	ENSHGLG00000017574	-	100	72.993	Heterocephalus_glaber_female
ENSXETG00000009004	lsm1	100	92.701	ENSHGLG00000005711	LSM1	100	92.701	Heterocephalus_glaber_female
ENSXETG00000009004	lsm1	100	92.701	ENSHGLG00100017660	LSM1	100	92.701	Heterocephalus_glaber_male
ENSXETG00000009004	lsm1	100	72.993	ENSHGLG00100012152	-	100	72.993	Heterocephalus_glaber_male
ENSXETG00000009004	lsm1	100	79.562	ENSHCOG00000017233	lsm1	100	79.562	Hippocampus_comes
ENSXETG00000009004	lsm1	100	81.752	ENSIPUG00000002312	LSM1	100	81.752	Ictalurus_punctatus
ENSXETG00000009004	lsm1	59	93.827	ENSSTOG00000026870	LSM1	94	93.827	Ictidomys_tridecemlineatus
ENSXETG00000009004	lsm1	100	91.241	ENSJJAG00000014605	-	100	91.241	Jaculus_jaculus
ENSXETG00000009004	lsm1	100	80.292	ENSKMAG00000003016	lsm1	100	80.292	Kryptolebias_marmoratus
ENSXETG00000009004	lsm1	100	80.292	ENSLBEG00000022352	lsm1	100	80.292	Labrus_bergylta
ENSXETG00000009004	lsm1	89	86.066	ENSLACG00000010947	LSM1	98	86.066	Latimeria_chalumnae
ENSXETG00000009004	lsm1	100	89.051	ENSLOCG00000015149	lsm1	100	89.051	Lepisosteus_oculatus
ENSXETG00000009004	lsm1	100	92.701	ENSLAFG00000003534	LSM1	100	92.701	Loxodonta_africana
ENSXETG00000009004	lsm1	100	92.701	ENSMFAG00000032661	LSM1	100	92.701	Macaca_fascicularis
ENSXETG00000009004	lsm1	100	92.701	ENSMLEG00000034535	LSM1	100	92.701	Mandrillus_leucophaeus
ENSXETG00000009004	lsm1	100	80.292	ENSMAMG00000007464	lsm1	100	80.292	Mastacembelus_armatus
ENSXETG00000009004	lsm1	100	80.292	ENSMZEG00005010321	lsm1	100	80.292	Maylandia_zebra
ENSXETG00000009004	lsm1	100	89.051	ENSMGAG00000002125	LSM1	100	89.051	Meleagris_gallopavo
ENSXETG00000009004	lsm1	100	91.971	ENSMICG00000030726	LSM1	100	91.971	Microcebus_murinus
ENSXETG00000009004	lsm1	100	91.971	ENSMOCG00000022817	Lsm1	100	91.971	Microtus_ochrogaster
ENSXETG00000009004	lsm1	100	81.022	ENSMMOG00000015466	lsm1	100	81.022	Mola_mola
ENSXETG00000009004	lsm1	100	94.161	ENSMODG00000010732	-	100	94.161	Monodelphis_domestica
ENSXETG00000009004	lsm1	59	88.889	ENSMALG00000001478	lsm1	82	88.889	Monopterus_albus
ENSXETG00000009004	lsm1	100	90.511	MGP_CAROLIEiJ_G0030930	Lsm1	100	90.511	Mus_caroli
ENSXETG00000009004	lsm1	100	90.511	ENSMUSG00000037296	Lsm1	100	90.511	Mus_musculus
ENSXETG00000009004	lsm1	100	90.511	MGP_PahariEiJ_G0021400	Lsm1	100	90.511	Mus_pahari
ENSXETG00000009004	lsm1	100	90.511	MGP_SPRETEiJ_G0032049	Lsm1	100	90.511	Mus_spretus
ENSXETG00000009004	lsm1	100	92.701	ENSMPUG00000009883	LSM1	100	92.701	Mustela_putorius_furo
ENSXETG00000009004	lsm1	100	91.971	ENSMLUG00000003734	LSM1	100	91.971	Myotis_lucifugus
ENSXETG00000009004	lsm1	100	91.971	ENSNGAG00000003753	Lsm1	100	91.971	Nannospalax_galili
ENSXETG00000009004	lsm1	59	88.889	ENSNBRG00000017370	lsm1	66	88.889	Neolamprologus_brichardi
ENSXETG00000009004	lsm1	100	92.701	ENSNLEG00000029390	LSM1	100	92.701	Nomascus_leucogenys
ENSXETG00000009004	lsm1	100	94.161	ENSMEUG00000014077	LSM1	100	94.161	Notamacropus_eugenii
ENSXETG00000009004	lsm1	88	88.430	ENSOPRG00000000333	LSM1	100	88.430	Ochotona_princeps
ENSXETG00000009004	lsm1	100	92.701	ENSODEG00000004834	LSM1	100	92.701	Octodon_degus
ENSXETG00000009004	lsm1	100	80.292	ENSONIG00000010782	lsm1	100	80.292	Oreochromis_niloticus
ENSXETG00000009004	lsm1	100	93.431	ENSOANG00000003256	LSM1	100	93.431	Ornithorhynchus_anatinus
ENSXETG00000009004	lsm1	100	92.701	ENSOCUG00000015399	LSM1	100	92.701	Oryctolagus_cuniculus
ENSXETG00000009004	lsm1	100	81.752	ENSORLG00000030288	lsm1	100	81.752	Oryzias_latipes
ENSXETG00000009004	lsm1	100	81.752	ENSORLG00020003941	lsm1	100	81.752	Oryzias_latipes_hni
ENSXETG00000009004	lsm1	100	80.292	ENSORLG00020006213	-	86	80.292	Oryzias_latipes_hni
ENSXETG00000009004	lsm1	100	81.752	ENSORLG00015018350	lsm1	100	81.752	Oryzias_latipes_hsok
ENSXETG00000009004	lsm1	100	80.292	ENSOMEG00000012454	lsm1	100	80.292	Oryzias_melastigma
ENSXETG00000009004	lsm1	100	92.701	ENSOGAG00000015161	LSM1	100	92.701	Otolemur_garnettii
ENSXETG00000009004	lsm1	100	92.701	ENSOARG00000001317	LSM1	100	92.701	Ovis_aries
ENSXETG00000009004	lsm1	100	92.701	ENSPPAG00000032279	LSM1	100	92.701	Pan_paniscus
ENSXETG00000009004	lsm1	100	92.701	ENSPPRG00000014172	-	100	92.701	Panthera_pardus
ENSXETG00000009004	lsm1	100	92.701	ENSPTIG00000010289	LSM1	100	92.701	Panthera_tigris_altaica
ENSXETG00000009004	lsm1	100	92.701	ENSPTRG00000020169	LSM1	100	92.701	Pan_troglodytes
ENSXETG00000009004	lsm1	100	92.701	ENSPANG00000008814	LSM1	100	92.701	Papio_anubis
ENSXETG00000009004	lsm1	100	81.022	ENSPKIG00000019409	LSM1	99	81.022	Paramormyrops_kingsleyae
ENSXETG00000009004	lsm1	100	85.401	ENSPKIG00000001839	lsm1	100	85.401	Paramormyrops_kingsleyae
ENSXETG00000009004	lsm1	98	86.567	ENSPSIG00000012563	LSM1	99	86.567	Pelodiscus_sinensis
ENSXETG00000009004	lsm1	59	88.889	ENSPMGG00000022999	lsm1	73	88.889	Periophthalmus_magnuspinnatus
ENSXETG00000009004	lsm1	85	77.778	ENSPMAG00000002671	lsm1	100	77.778	Petromyzon_marinus
ENSXETG00000009004	lsm1	100	92.701	ENSPCIG00000008880	LSM1	100	92.701	Phascolarctos_cinereus
ENSXETG00000009004	lsm1	100	79.562	ENSPFOG00000016029	lsm1	100	79.562	Poecilia_formosa
ENSXETG00000009004	lsm1	100	79.562	ENSPLAG00000007879	lsm1	100	79.562	Poecilia_latipinna
ENSXETG00000009004	lsm1	100	79.562	ENSPMEG00000023550	lsm1	100	79.562	Poecilia_mexicana
ENSXETG00000009004	lsm1	100	79.562	ENSPREG00000009574	lsm1	100	79.562	Poecilia_reticulata
ENSXETG00000009004	lsm1	100	92.701	ENSPPYG00000018521	LSM1	100	92.701	Pongo_abelii
ENSXETG00000009004	lsm1	100	92.701	ENSPCOG00000020901	-	100	92.701	Propithecus_coquereli
ENSXETG00000009004	lsm1	100	92.701	ENSPVAG00000006016	LSM1	100	92.701	Pteropus_vampyrus
ENSXETG00000009004	lsm1	100	80.292	ENSPNYG00000018067	lsm1	100	80.292	Pundamilia_nyererei
ENSXETG00000009004	lsm1	100	82.482	ENSPNAG00000013707	lsm1	100	82.482	Pygocentrus_nattereri
ENSXETG00000009004	lsm1	100	91.971	ENSRNOG00000015375	Lsm1	100	91.971	Rattus_norvegicus
ENSXETG00000009004	lsm1	100	92.701	ENSRBIG00000027449	LSM1	100	92.701	Rhinopithecus_bieti
ENSXETG00000009004	lsm1	100	92.701	ENSRROG00000036074	LSM1	100	92.701	Rhinopithecus_roxellana
ENSXETG00000009004	lsm1	88	42.276	YJL124C	LSM1	67	42.276	Saccharomyces_cerevisiae
ENSXETG00000009004	lsm1	100	94.161	ENSSHAG00000017260	LSM1	100	94.161	Sarcophilus_harrisii
ENSXETG00000009004	lsm1	100	86.131	ENSSFOG00015019528	lsm1	100	86.131	Scleropages_formosus
ENSXETG00000009004	lsm1	100	80.292	ENSSMAG00000004930	lsm1	100	80.292	Scophthalmus_maximus
ENSXETG00000009004	lsm1	100	80.292	ENSSDUG00000021823	lsm1	100	80.292	Seriola_dumerili
ENSXETG00000009004	lsm1	100	80.292	ENSSLDG00000012154	lsm1	100	80.292	Seriola_lalandi_dorsalis
ENSXETG00000009004	lsm1	100	92.701	ENSSPUG00000014878	LSM1	100	92.701	Sphenodon_punctatus
ENSXETG00000009004	lsm1	100	80.292	ENSSPAG00000020548	lsm1	100	80.292	Stegastes_partitus
ENSXETG00000009004	lsm1	100	91.971	ENSSSCG00000039058	LSM1	100	91.971	Sus_scrofa
ENSXETG00000009004	lsm1	100	91.971	ENSTGUG00000004793	LSM1	100	91.971	Taeniopygia_guttata
ENSXETG00000009004	lsm1	100	82.482	ENSTRUG00000025239	lsm1	100	82.482	Takifugu_rubripes
ENSXETG00000009004	lsm1	100	82.482	ENSTNIG00000004055	lsm1	100	82.482	Tetraodon_nigroviridis
ENSXETG00000009004	lsm1	88	90.083	ENSTBEG00000015884	LSM1	100	90.083	Tupaia_belangeri
ENSXETG00000009004	lsm1	100	92.701	ENSTTRG00000004482	LSM1	100	92.701	Tursiops_truncatus
ENSXETG00000009004	lsm1	100	92.701	ENSUAMG00000004103	LSM1	100	92.701	Ursus_americanus
ENSXETG00000009004	lsm1	100	92.701	ENSUMAG00000009132	LSM1	100	92.701	Ursus_maritimus
ENSXETG00000009004	lsm1	59	92.593	ENSVPAG00000011593	LSM1	100	92.593	Vicugna_pacos
ENSXETG00000009004	lsm1	100	92.701	ENSVVUG00000020191	LSM1	100	92.701	Vulpes_vulpes
ENSXETG00000009004	lsm1	66	65.556	ENSVVUG00000014880	-	91	65.556	Vulpes_vulpes
ENSXETG00000009004	lsm1	100	78.832	ENSXCOG00000015631	lsm1	100	78.832	Xiphophorus_couchianus
ENSXETG00000009004	lsm1	100	78.832	ENSXMAG00000026637	lsm1	100	78.832	Xiphophorus_maculatus