EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000009517 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 10745 bases
Position: chrGL172921.1:1167167-1177911
Accession: XB-GENE-989986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000021025	RRM_1	PF00076.22	1e-61	1	4
ENSXETP00000021025	RRM_1	PF00076.22	1e-61	2	4
ENSXETP00000021025	RRM_1	PF00076.22	1e-61	3	4
ENSXETP00000021025	RRM_1	PF00076.22	1e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000021025	-	2176	-	ENSXETP00000021025	700 (aa)	-	F6WH95
ENSXETT00000021029	-	877	-	ENSXETP00000021029	268 (aa)	-	Q28FQ0

Gene Model

Click here to download ENSXETG00000009517's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000009517's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000009517	ncl	54	63.298	ENSAPOG00000023888	ncl	56	62.334	Acanthochromis_polyacanthus
ENSXETG00000009517	ncl	56	40.678	ENSAPOG00000014534	-	67	40.355	Acanthochromis_polyacanthus
ENSXETG00000009517	ncl	71	62.667	ENSACIG00000013234	ncl	77	53.293	Amphilophus_citrinellus
ENSXETG00000009517	ncl	52	40.885	ENSAOCG00000014792	-	57	40.761	Amphiprion_ocellaris
ENSXETG00000009517	ncl	54	63.032	ENSAOCG00000003133	ncl	52	62.234	Amphiprion_ocellaris
ENSXETG00000009517	ncl	54	63.032	ENSAPEG00000002769	ncl	52	62.234	Amphiprion_percula
ENSXETG00000009517	ncl	52	41.146	ENSAPEG00000013612	-	57	41.033	Amphiprion_percula
ENSXETG00000009517	ncl	71	65.123	ENSATEG00000013343	ncl	52	64.305	Anabas_testudineus
ENSXETG00000009517	ncl	54	44.039	ENSATEG00000019862	-	76	45.777	Anabas_testudineus
ENSXETG00000009517	ncl	70	54.343	ENSAPLG00000012897	-	94	52.027	Anas_platyrhynchos
ENSXETG00000009517	ncl	54	66.321	ENSACAG00000001006	-	52	65.803	Anolis_carolinensis
ENSXETG00000009517	ncl	74	58.245	ENSAMXG00000001647	ncl	81	59.603	Astyanax_mexicanus
ENSXETG00000009517	ncl	60	43.296	ENSCHIG00000012665	-	53	43.158	Capra_hircus
ENSXETG00000009517	ncl	54	66.839	ENSCPBG00000016444	-	56	65.803	Chrysemys_picta_bellii
ENSXETG00000009517	ncl	71	61.299	ENSCSEG00000015089	ncl	79	50.820	Cynoglossus_semilaevis
ENSXETG00000009517	ncl	53	62.567	ENSCVAG00000012600	ncl	54	61.538	Cyprinodon_variegatus
ENSXETG00000009517	ncl	54	64.042	ENSDARG00000002710	ncl	80	64.650	Danio_rerio
ENSXETG00000009517	ncl	53	48.031	ENSDNOG00000031611	-	66	47.105	Dasypus_novemcinctus
ENSXETG00000009517	ncl	52	48.501	ENSDNOG00000040257	-	61	47.297	Dasypus_novemcinctus
ENSXETG00000009517	ncl	54	46.803	ENSELUG00000022826	-	82	46.736	Esox_lucius
ENSXETG00000009517	ncl	54	60.526	ENSELUG00000006033	ncl	56	60.789	Esox_lucius
ENSXETG00000009517	ncl	54	64.062	ENSFALG00000007592	-	54	62.857	Ficedula_albicollis
ENSXETG00000009517	ncl	54	63.130	ENSFHEG00000018000	ncl	60	62.963	Fundulus_heteroclitus
ENSXETG00000009517	ncl	54	59.269	ENSGMOG00000001341	ncl	58	58.919	Gadus_morhua
ENSXETG00000009517	ncl	54	63.185	ENSGALG00000032930	NCL	55	62.402	Gallus_gallus
ENSXETG00000009517	ncl	54	63.660	ENSGAFG00000015375	ncl	50	62.865	Gambusia_affinis
ENSXETG00000009517	ncl	54	58.718	ENSGACG00000008970	ncl	91	50.347	Gasterosteus_aculeatus
ENSXETG00000009517	ncl	54	66.057	ENSGAGG00000013330	-	56	64.508	Gopherus_agassizii
ENSXETG00000009517	ncl	61	54.907	ENSHBUG00000006869	ncl	53	61.111	Haplochromis_burtoni
ENSXETG00000009517	ncl	54	60.477	ENSKMAG00000008111	ncl	54	60.263	Kryptolebias_marmoratus
ENSXETG00000009517	ncl	54	61.214	ENSLBEG00000019073	ncl	56	60.422	Labrus_bergylta
ENSXETG00000009517	ncl	54	43.687	ENSLBEG00000007915	-	66	43.299	Labrus_bergylta
ENSXETG00000009517	ncl	50	44.687	ENSLBEG00000014278	-	81	44.290	Labrus_bergylta
ENSXETG00000009517	ncl	54	55.118	ENSLACG00000022167	-	79	55.585	Latimeria_chalumnae
ENSXETG00000009517	ncl	62	60.000	ENSLACG00000009328	ncl	56	66.053	Latimeria_chalumnae
ENSXETG00000009517	ncl	52	62.088	ENSLOCG00000004828	ncl	74	52.995	Lepisosteus_oculatus
ENSXETG00000009517	ncl	54	42.674	ENSMAMG00000003479	-	66	42.424	Mastacembelus_armatus
ENSXETG00000009517	ncl	53	62.834	ENSMGAG00000008147	-	85	62.032	Meleagris_gallopavo
ENSXETG00000009517	ncl	53	62.402	ENSMODG00000002470	-	54	61.917	Monodelphis_domestica
ENSXETG00000009517	ncl	56	58.245	ENSMALG00000014827	ncl	70	51.753	Monopterus_albus
ENSXETG00000009517	ncl	51	44.514	ENSMPUG00000001663	-	58	44.514	Mustela_putorius_furo
ENSXETG00000009517	ncl	53	63.830	ENSMEUG00000012335	-	54	63.325	Notamacropus_eugenii
ENSXETG00000009517	ncl	55	39.175	ENSONIG00000010631	-	98	39.740	Oreochromis_niloticus
ENSXETG00000009517	ncl	54	61.376	ENSONIG00000012508	ncl	52	61.111	Oreochromis_niloticus
ENSXETG00000009517	ncl	56	36.320	ENSORLG00000004645	-	84	35.930	Oryzias_latipes
ENSXETG00000009517	ncl	52	61.878	ENSORLG00000007055	ncl	84	60.789	Oryzias_latipes
ENSXETG00000009517	ncl	54	60.847	ENSORLG00020017943	ncl	51	60.847	Oryzias_latipes_hni
ENSXETG00000009517	ncl	52	38.624	ENSORLG00020003497	-	71	38.292	Oryzias_latipes_hni
ENSXETG00000009517	ncl	54	58.311	ENSORLG00015013815	ncl	85	61.415	Oryzias_latipes_hsok
ENSXETG00000009517	ncl	52	38.624	ENSORLG00015006613	-	73	38.292	Oryzias_latipes_hsok
ENSXETG00000009517	ncl	54	62.069	ENSOMEG00000020786	ncl	50	61.053	Oryzias_melastigma
ENSXETG00000009517	ncl	70	35.606	ENSOMEG00000015864	-	80	35.372	Oryzias_melastigma
ENSXETG00000009517	ncl	75	61.458	ENSPKIG00000002604	ncl	53	61.198	Paramormyrops_kingsleyae
ENSXETG00000009517	ncl	54	60.638	ENSPMGG00000004709	ncl	79	62.258	Periophthalmus_magnuspinnatus
ENSXETG00000009517	ncl	66	63.130	ENSPFOG00000024205	ncl	50	63.660	Poecilia_formosa
ENSXETG00000009517	ncl	54	62.865	ENSPLAG00000024026	ncl	50	63.395	Poecilia_latipinna
ENSXETG00000009517	ncl	54	63.130	ENSPMEG00000006000	ncl	50	63.660	Poecilia_mexicana
ENSXETG00000009517	ncl	56	44.361	ENSSMAG00000007582	-	62	44.560	Scophthalmus_maximus
ENSXETG00000009517	ncl	56	43.521	ENSSDUG00000010922	-	72	42.092	Seriola_dumerili
ENSXETG00000009517	ncl	61	56.674	ENSSDUG00000006128	ncl	85	62.599	Seriola_dumerili
ENSXETG00000009517	ncl	54	63.298	ENSSLDG00000002012	ncl	53	62.766	Seriola_lalandi_dorsalis
ENSXETG00000009517	ncl	56	43.596	ENSSLDG00000015784	-	65	43.299	Seriola_lalandi_dorsalis
ENSXETG00000009517	ncl	54	64.322	ENSSPUG00000008244	-	60	62.907	Sphenodon_punctatus
ENSXETG00000009517	ncl	57	42.145	ENSSPAG00000001859	-	62	41.927	Stegastes_partitus
ENSXETG00000009517	ncl	54	63.281	ENSTGUG00000009782	-	60	62.857	Taeniopygia_guttata
ENSXETG00000009517	ncl	52	64.286	ENSTRUG00000008185	ncl	80	63.228	Takifugu_rubripes
ENSXETG00000009517	ncl	51	63.712	ENSTNIG00000012186	ncl	74	56.061	Tetraodon_nigroviridis
ENSXETG00000009517	ncl	55	46.006	ENSXCOG00000003524	ncl	84	50.529	Xiphophorus_couchianus
ENSXETG00000009517	ncl	51	37.398	ENSXCOG00000007369	-	86	36.856	Xiphophorus_couchianus