EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000009642 (Gene tree)
Gene ID: -
Gene Symbol: cstf2
Alias: -
Full Name: Xenopus tropicalis cleavage stimulation factor%2C 3' pre-RNA%2C subunit 2 (cstf2)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 18515 bases
Position: chrGL173092.1:825507-844021
Accession: NM_001130235
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000021238	RRM_1	PF00076.22	1e-25	1	1
ENSXETP00000021237	RRM_1	PF00076.22	1.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000021238	-	1722	XM_012968083	ENSXETP00000021238	498 (aa)	XP_012823537	B3DL52
ENSXETT00000021237	-	2073	-	ENSXETP00000021237	615 (aa)	-	F7AMH6

Gene Model

Click here to download ENSXETG00000009642's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000009642's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000009642	cstf2	100	66.154	ENSG00000101811	CSTF2	92	86.893	Homo_sapiens
ENSXETG00000009642	cstf2	99	68.164	ENSAPOG00000005630	cstf2	89	80.882	Acanthochromis_polyacanthus
ENSXETG00000009642	cstf2	100	62.787	ENSAMEG00000002082	CSTF2	100	61.639	Ailuropoda_melanoleuca
ENSXETG00000009642	cstf2	84	87.931	ENSAOCG00000020905	cstf2	89	80.882	Amphiprion_ocellaris
ENSXETG00000009642	cstf2	84	87.931	ENSAPEG00000006526	cstf2	89	80.882	Amphiprion_percula
ENSXETG00000009642	cstf2	86	80.882	ENSATEG00000018186	cstf2	88	80.882	Anabas_testudineus
ENSXETG00000009642	cstf2	96	64.856	ENSAPLG00000007255	CSTF2	98	62.925	Anas_platyrhynchos
ENSXETG00000009642	cstf2	100	65.641	ENSANAG00000022342	CSTF2	82	92.188	Aotus_nancymaae
ENSXETG00000009642	cstf2	85	86.207	ENSACLG00000000779	cstf2	85	79.104	Astatotilapia_calliptera
ENSXETG00000009642	cstf2	67	98.413	ENSAMXG00000021477	cstf2	96	98.413	Astyanax_mexicanus
ENSXETG00000009642	cstf2	100	65.862	ENSBTAG00000003547	CSTF2	83	87.143	Bos_taurus
ENSXETG00000009642	cstf2	100	65.812	ENSCJAG00000004422	CSTF2	94	92.188	Callithrix_jacchus
ENSXETG00000009642	cstf2	87	87.143	ENSCAFG00000017551	CSTF2	82	87.143	Canis_familiaris
ENSXETG00000009642	cstf2	87	87.143	ENSCAFG00020007619	CSTF2	83	87.143	Canis_lupus_dingo
ENSXETG00000009642	cstf2	87	87.143	ENSCHIG00000016994	CSTF2	83	87.143	Capra_hircus
ENSXETG00000009642	cstf2	87	85.714	ENSTSYG00000006529	CSTF2	82	85.714	Carlito_syrichta
ENSXETG00000009642	cstf2	87	87.143	ENSCPOG00000015255	CSTF2	89	89.571	Cavia_porcellus
ENSXETG00000009642	cstf2	100	65.812	ENSCCAG00000032975	CSTF2	82	92.188	Cebus_capucinus
ENSXETG00000009642	cstf2	100	66.724	ENSCATG00000022835	CSTF2	82	92.188	Cercocebus_atys
ENSXETG00000009642	cstf2	87	93.333	ENSCLAG00000001904	CSTF2	87	90.625	Chinchilla_lanigera
ENSXETG00000009642	cstf2	100	63.967	ENSCSAG00000010360	CSTF2	82	92.188	Chlorocebus_sabaeus
ENSXETG00000009642	cstf2	100	71.719	ENSCPBG00000014293	CSTF2	92	75.355	Chrysemys_picta_bellii
ENSXETG00000009642	cstf2	100	66.724	ENSCANG00000030612	CSTF2	82	92.188	Colobus_angolensis_palliatus
ENSXETG00000009642	cstf2	87	88.571	ENSCGRG00001023023	Cstf2	82	88.571	Cricetulus_griseus_chok1gshd
ENSXETG00000009642	cstf2	86	88.571	ENSCGRG00000003897	Cstf2	85	88.571	Cricetulus_griseus_crigri
ENSXETG00000009642	cstf2	86	77.941	ENSCVAG00000005731	cstf2	88	77.941	Cyprinodon_variegatus
ENSXETG00000009642	cstf2	98	69.819	ENSDARG00000090788	cstf2	97	92.188	Danio_rerio
ENSXETG00000009642	cstf2	100	65.808	ENSDORG00000007195	Cstf2	89	89.506	Dipodomys_ordii
ENSXETG00000009642	cstf2	80	85.714	ENSETEG00000004931	CSTF2	67	85.714	Echinops_telfairi
ENSXETG00000009642	cstf2	88	76.543	ENSEASG00005001216	CSTF2	100	62.479	Equus_asinus_asinus
ENSXETG00000009642	cstf2	100	65.470	ENSECAG00000009325	CSTF2	100	62.479	Equus_caballus
ENSXETG00000009642	cstf2	87	90.625	ENSFCAG00000007000	CSTF2	81	90.625	Felis_catus
ENSXETG00000009642	cstf2	91	62.478	ENSFALG00000003859	CSTF2	100	58.266	Ficedula_albicollis
ENSXETG00000009642	cstf2	100	66.325	ENSFDAG00000002416	CSTF2	100	60.095	Fukomys_damarensis
ENSXETG00000009642	cstf2	80	92.500	ENSGMOG00000005145	cstf2	91	86.538	Gadus_morhua
ENSXETG00000009642	cstf2	100	68.430	ENSGALG00000006760	CSTF2	100	78.593	Gallus_gallus
ENSXETG00000009642	cstf2	86	82.353	ENSGAFG00000020027	cstf2	85	82.353	Gambusia_affinis
ENSXETG00000009642	cstf2	77	80.753	ENSGACG00000017326	cstf2	96	85.714	Gasterosteus_aculeatus
ENSXETG00000009642	cstf2	100	71.076	ENSGAGG00000006037	CSTF2	94	71.300	Gopherus_agassizii
ENSXETG00000009642	cstf2	100	66.724	ENSGGOG00000022267	CSTF2	82	92.188	Gorilla_gorilla
ENSXETG00000009642	cstf2	85	86.207	ENSHBUG00000016183	cstf2	85	79.104	Haplochromis_burtoni
ENSXETG00000009642	cstf2	100	65.812	ENSHGLG00000000659	-	88	89.091	Heterocephalus_glaber_female
ENSXETG00000009642	cstf2	97	73.333	ENSHGLG00000013455	-	96	73.333	Heterocephalus_glaber_female
ENSXETG00000009642	cstf2	100	65.812	ENSHGLG00100001130	-	88	89.091	Heterocephalus_glaber_male
ENSXETG00000009642	cstf2	97	73.333	ENSHGLG00100015391	-	95	73.333	Heterocephalus_glaber_male
ENSXETG00000009642	cstf2	84	87.273	ENSHCOG00000005157	cstf2	86	87.719	Hippocampus_comes
ENSXETG00000009642	cstf2	100	67.954	ENSIPUG00000017839	cstf2	99	67.043	Ictalurus_punctatus
ENSXETG00000009642	cstf2	88	82.895	ENSSTOG00000023445	CSTF2	98	84.444	Ictidomys_tridecemlineatus
ENSXETG00000009642	cstf2	100	66.325	ENSJJAG00000020507	Cstf2	93	90.625	Jaculus_jaculus
ENSXETG00000009642	cstf2	67	94.915	ENSLBEG00000028720	cstf2	91	94.915	Labrus_bergylta
ENSXETG00000009642	cstf2	99	60.762	ENSLACG00000015927	CSTF2	99	59.934	Latimeria_chalumnae
ENSXETG00000009642	cstf2	99	72.973	ENSLOCG00000015300	cstf2	93	70.849	Lepisosteus_oculatus
ENSXETG00000009642	cstf2	100	65.285	ENSLAFG00000000474	CSTF2	100	65.232	Loxodonta_africana
ENSXETG00000009642	cstf2	100	66.724	ENSMFAG00000043888	CSTF2	82	92.188	Macaca_fascicularis
ENSXETG00000009642	cstf2	100	65.625	ENSMMUG00000013008	CSTF2	82	92.188	Macaca_mulatta
ENSXETG00000009642	cstf2	100	66.154	ENSMNEG00000041824	CSTF2	82	92.188	Macaca_nemestrina
ENSXETG00000009642	cstf2	100	66.724	ENSMLEG00000036870	CSTF2	82	92.188	Mandrillus_leucophaeus
ENSXETG00000009642	cstf2	84	81.538	ENSMAMG00000020364	cstf2	88	80.303	Mastacembelus_armatus
ENSXETG00000009642	cstf2	85	86.207	ENSMZEG00005007200	cstf2	88	79.104	Maylandia_zebra
ENSXETG00000009642	cstf2	92	78.409	ENSMGAG00000004139	CSTF2	100	76.259	Meleagris_gallopavo
ENSXETG00000009642	cstf2	87	88.571	ENSMAUG00000000965	Cstf2	82	88.571	Mesocricetus_auratus
ENSXETG00000009642	cstf2	87	87.143	ENSMICG00000014121	CSTF2	95	87.143	Microcebus_murinus
ENSXETG00000009642	cstf2	87	88.571	ENSMOCG00000008081	Cstf2	83	88.571	Microtus_ochrogaster
ENSXETG00000009642	cstf2	80	92.105	ENSMMOG00000000538	cstf2	91	92.500	Mola_mola
ENSXETG00000009642	cstf2	100	64.478	ENSMODG00000011785	CSTF2	100	65.093	Monodelphis_domestica
ENSXETG00000009642	cstf2	87	88.571	MGP_CAROLIEiJ_G0033383	Cstf2	87	90.625	Mus_caroli
ENSXETG00000009642	cstf2	87	88.571	ENSMUSG00000031256	Cstf2	87	90.625	Mus_musculus
ENSXETG00000009642	cstf2	87	88.571	MGP_PahariEiJ_G0031923	Cstf2	83	88.571	Mus_pahari
ENSXETG00000009642	cstf2	87	88.571	MGP_SPRETEiJ_G0034548	Cstf2	87	90.625	Mus_spretus
ENSXETG00000009642	cstf2	87	87.143	ENSMPUG00000002339	CSTF2	83	87.143	Mustela_putorius_furo
ENSXETG00000009642	cstf2	88	76.543	ENSMLUG00000004598	CSTF2	83	76.543	Myotis_lucifugus
ENSXETG00000009642	cstf2	86	88.571	ENSNGAG00000021985	Cstf2	82	88.571	Nannospalax_galili
ENSXETG00000009642	cstf2	78	94.118	ENSNBRG00000021694	cstf2	91	94.444	Neolamprologus_brichardi
ENSXETG00000009642	cstf2	100	66.552	ENSNLEG00000007510	CSTF2	82	92.188	Nomascus_leucogenys
ENSXETG00000009642	cstf2	85	96.078	ENSMEUG00000011186	-	96	81.579	Notamacropus_eugenii
ENSXETG00000009642	cstf2	85	92.157	ENSMEUG00000007875	-	97	81.944	Notamacropus_eugenii
ENSXETG00000009642	cstf2	80	81.579	ENSMEUG00000014025	-	96	81.579	Notamacropus_eugenii
ENSXETG00000009642	cstf2	86	71.946	ENSOPRG00000003106	CSTF2	78	97.500	Ochotona_princeps
ENSXETG00000009642	cstf2	100	66.154	ENSODEG00000002059	CSTF2	100	58.321	Octodon_degus
ENSXETG00000009642	cstf2	88	98.039	ENSOANG00000004208	CSTF2	74	91.304	Ornithorhynchus_anatinus
ENSXETG00000009642	cstf2	87	87.143	ENSOCUG00000010468	CSTF2	82	87.143	Oryctolagus_cuniculus
ENSXETG00000009642	cstf2	83	87.755	ENSORLG00000001380	cstf2	89	81.538	Oryzias_latipes
ENSXETG00000009642	cstf2	83	87.755	ENSORLG00020021917	cstf2	89	81.538	Oryzias_latipes_hni
ENSXETG00000009642	cstf2	83	87.755	ENSORLG00015011996	cstf2	89	81.538	Oryzias_latipes_hsok
ENSXETG00000009642	cstf2	75	87.879	ENSOGAG00000011192	CSTF2	100	59.591	Otolemur_garnettii
ENSXETG00000009642	cstf2	87	87.143	ENSOARG00000001022	CSTF2	83	87.143	Ovis_aries
ENSXETG00000009642	cstf2	100	66.724	ENSPPAG00000031804	CSTF2	82	92.188	Pan_paniscus
ENSXETG00000009642	cstf2	87	90.625	ENSPPRG00000022492	CSTF2	81	90.625	Panthera_pardus
ENSXETG00000009642	cstf2	87	90.625	ENSPTIG00000009922	CSTF2	81	90.625	Panthera_tigris_altaica
ENSXETG00000009642	cstf2	100	66.724	ENSPTRG00000022090	CSTF2	82	92.188	Pan_troglodytes
ENSXETG00000009642	cstf2	100	66.724	ENSPANG00000002303	CSTF2	82	92.188	Papio_anubis
ENSXETG00000009642	cstf2	84	92.982	ENSPKIG00000005033	cstf2	92	92.453	Paramormyrops_kingsleyae
ENSXETG00000009642	cstf2	85	84.483	ENSPMGG00000006534	cstf2	89	84.483	Periophthalmus_magnuspinnatus
ENSXETG00000009642	cstf2	100	64.906	ENSPEMG00000019415	Cstf2	84	77.778	Peromyscus_maniculatus_bairdii
ENSXETG00000009642	cstf2	82	96.078	ENSPCIG00000002989	CSTF2	84	81.579	Phascolarctos_cinereus
ENSXETG00000009642	cstf2	99	65.970	ENSPLAG00000011176	cstf2	88	82.353	Poecilia_latipinna
ENSXETG00000009642	cstf2	65	80.882	ENSPREG00000011481	cstf2	89	80.882	Poecilia_reticulata
ENSXETG00000009642	cstf2	100	63.967	ENSPPYG00000020541	CSTF2	82	92.188	Pongo_abelii
ENSXETG00000009642	cstf2	100	66.379	ENSPCOG00000027744	CSTF2	95	87.143	Propithecus_coquereli
ENSXETG00000009642	cstf2	96	51.773	ENSPVAG00000008342	CSTF2	100	50.709	Pteropus_vampyrus
ENSXETG00000009642	cstf2	52	91.781	ENSPNYG00000010852	cstf2	94	91.781	Pundamilia_nyererei
ENSXETG00000009642	cstf2	82	88.000	ENSPNAG00000018887	cstf2	93	88.000	Pygocentrus_nattereri
ENSXETG00000009642	cstf2	87	88.571	ENSRNOG00000048025	Cstf2	95	88.571	Rattus_norvegicus
ENSXETG00000009642	cstf2	100	66.551	ENSRBIG00000030745	CSTF2	100	64.273	Rhinopithecus_bieti
ENSXETG00000009642	cstf2	100	66.724	ENSRROG00000045042	CSTF2	82	92.188	Rhinopithecus_roxellana
ENSXETG00000009642	cstf2	100	65.812	ENSSBOG00000021649	CSTF2	82	92.188	Saimiri_boliviensis_boliviensis
ENSXETG00000009642	cstf2	89	96.078	ENSSHAG00000003681	CSTF2	88	81.579	Sarcophilus_harrisii
ENSXETG00000009642	cstf2	84	85.484	ENSSFOG00015006348	cstf2	94	82.090	Scleropages_formosus
ENSXETG00000009642	cstf2	98	59.065	ENSSMAG00000013463	cstf2	86	89.091	Scophthalmus_maximus
ENSXETG00000009642	cstf2	100	64.205	ENSSPUG00000005288	-	91	75.976	Sphenodon_punctatus
ENSXETG00000009642	cstf2	87	87.143	ENSSSCG00000012486	CSTF2	84	87.143	Sus_scrofa
ENSXETG00000009642	cstf2	100	67.116	ENSTGUG00000002253	CSTF2	100	65.821	Taeniopygia_guttata
ENSXETG00000009642	cstf2	85	89.474	ENSTNIG00000016860	cstf2	93	89.474	Tetraodon_nigroviridis
ENSXETG00000009642	cstf2	53	100.000	ENSTBEG00000010029	-	56	100.000	Tupaia_belangeri
ENSXETG00000009642	cstf2	87	87.143	ENSTTRG00000013556	CSTF2	82	87.143	Tursiops_truncatus
ENSXETG00000009642	cstf2	87	87.143	ENSUAMG00000026605	CSTF2	83	87.143	Ursus_americanus
ENSXETG00000009642	cstf2	87	87.143	ENSUMAG00000012417	CSTF2	94	87.143	Ursus_maritimus
ENSXETG00000009642	cstf2	81	75.000	ENSVPAG00000006466	CSTF2	71	75.291	Vicugna_pacos
ENSXETG00000009642	cstf2	87	87.143	ENSVVUG00000004717	CSTF2	82	87.143	Vulpes_vulpes
ENSXETG00000009642	cstf2	67	96.970	ENSXCOG00000016436	cstf2	91	96.970	Xiphophorus_couchianus
ENSXETG00000009642	cstf2	65	79.412	ENSXMAG00000013524	cstf2	89	79.412	Xiphophorus_maculatus