EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000009698 (Gene tree)
Gene ID: -
Gene Symbol: crnkl1
Alias: -
Full Name: Xenopus tropicalis crooked neck pre-mRNA splicing factor 1 (crnkl1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 8181 bases
Position: chrGL173465.1:228537-236717
Accession: NM_001016895
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000059698	Suf	PF05843.14	1.9e-12	1	1
ENSXETP00000021361	Suf	PF05843.14	4.1e-12	1	1
ENSXETP00000059698	HAT	PF02184.16	5.8e-38	1	2
ENSXETP00000059698	HAT	PF02184.16	5.8e-38	2	2
ENSXETP00000021361	HAT	PF02184.16	1e-33	1	2
ENSXETP00000021361	HAT	PF02184.16	1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000062513	-	2200	-	ENSXETP00000059698	688 (aa)	-	F6QPY8
ENSXETT00000021361	-	2197	-	ENSXETP00000021361	686 (aa)	-	F6X547

Gene Model

Click here to download ENSXETG00000009698's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000009698's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000009698	crnkl1	99	89.956	ENSG00000101343	CRNKL1	99	89.956	Homo_sapiens
ENSXETG00000009698	crnkl1	99	87.045	ENSAPOG00000009705	crnkl1	97	87.852	Acanthochromis_polyacanthus
ENSXETG00000009698	crnkl1	99	91.056	ENSAMEG00000000270	CRNKL1	83	91.121	Ailuropoda_melanoleuca
ENSXETG00000009698	crnkl1	99	85.922	ENSACIG00000015267	crnkl1	91	85.922	Amphilophus_citrinellus
ENSXETG00000009698	crnkl1	99	87.045	ENSAOCG00000021964	crnkl1	91	87.045	Amphiprion_ocellaris
ENSXETG00000009698	crnkl1	100	86.317	ENSAPEG00000015041	crnkl1	91	86.919	Amphiprion_percula
ENSXETG00000009698	crnkl1	100	86.047	ENSATEG00000001068	crnkl1	90	86.192	Anabas_testudineus
ENSXETG00000009698	crnkl1	99	89.343	ENSAPLG00000013105	CRNKL1	99	89.343	Anas_platyrhynchos
ENSXETG00000009698	crnkl1	99	90.393	ENSACAG00000005284	CRNKL1	99	90.393	Anolis_carolinensis
ENSXETG00000009698	crnkl1	92	90.650	ENSANAG00000024889	CRNKL1	99	90.650	Aotus_nancymaae
ENSXETG00000009698	crnkl1	97	88.174	ENSACLG00000010813	crnkl1	88	88.174	Astatotilapia_calliptera
ENSXETG00000009698	crnkl1	97	88.438	ENSAMXG00000018334	crnkl1	91	87.758	Astyanax_mexicanus
ENSXETG00000009698	crnkl1	99	90.393	ENSBTAG00000008472	CRNKL1	99	90.393	Bos_taurus
ENSXETG00000009698	crnkl1	93	62.208	WBGene00019762	M03F8.3	91	61.347	Caenorhabditis_elegans
ENSXETG00000009698	crnkl1	99	90.102	ENSCJAG00000005393	CRNKL1	99	90.102	Callithrix_jacchus
ENSXETG00000009698	crnkl1	99	90.909	ENSCAFG00000005333	CRNKL1	94	90.975	Canis_familiaris
ENSXETG00000009698	crnkl1	99	90.975	ENSCAFG00020027488	CRNKL1	99	90.975	Canis_lupus_dingo
ENSXETG00000009698	crnkl1	99	90.630	ENSCHIG00000013171	CRNKL1	98	90.630	Capra_hircus
ENSXETG00000009698	crnkl1	99	90.102	ENSTSYG00000004197	CRNKL1	99	90.102	Carlito_syrichta
ENSXETG00000009698	crnkl1	90	88.245	ENSCAPG00000010501	CRNKL1	99	88.245	Cavia_aperea
ENSXETG00000009698	crnkl1	99	89.083	ENSCPOG00000004418	CRNKL1	99	89.083	Cavia_porcellus
ENSXETG00000009698	crnkl1	99	89.811	ENSCCAG00000027037	CRNKL1	99	89.811	Cebus_capucinus
ENSXETG00000009698	crnkl1	99	89.811	ENSCATG00000034247	CRNKL1	99	89.811	Cercocebus_atys
ENSXETG00000009698	crnkl1	99	89.956	ENSCLAG00000013859	CRNKL1	99	89.956	Chinchilla_lanigera
ENSXETG00000009698	crnkl1	99	89.811	ENSCSAG00000011434	CRNKL1	99	89.811	Chlorocebus_sabaeus
ENSXETG00000009698	crnkl1	99	90.323	ENSCHOG00000006371	CRNKL1	84	90.539	Choloepus_hoffmanni
ENSXETG00000009698	crnkl1	100	89.665	ENSCPBG00000023501	CRNKL1	100	90.407	Chrysemys_picta_bellii
ENSXETG00000009698	crnkl1	97	69.219	ENSCING00000002709	-	100	67.977	Ciona_intestinalis
ENSXETG00000009698	crnkl1	99	89.956	ENSCANG00000038789	CRNKL1	99	89.956	Colobus_angolensis_palliatus
ENSXETG00000009698	crnkl1	99	90.539	ENSCGRG00001001115	-	99	90.539	Cricetulus_griseus_chok1gshd
ENSXETG00000009698	crnkl1	99	90.539	ENSCGRG00001000687	-	99	90.539	Cricetulus_griseus_chok1gshd
ENSXETG00000009698	crnkl1	99	90.539	ENSCGRG00000007854	Crnkl1	99	90.539	Cricetulus_griseus_crigri
ENSXETG00000009698	crnkl1	99	86.156	ENSCSEG00000005594	crnkl1	87	85.320	Cynoglossus_semilaevis
ENSXETG00000009698	crnkl1	97	87.425	ENSCVAG00000015172	crnkl1	92	85.320	Cyprinodon_variegatus
ENSXETG00000009698	crnkl1	97	85.671	ENSDARG00000007901	crnkl1	90	85.337	Danio_rerio
ENSXETG00000009698	crnkl1	99	91.228	ENSDNOG00000016226	CRNKL1	95	91.228	Dasypus_novemcinctus
ENSXETG00000009698	crnkl1	97	83.033	ENSDORG00000023724	-	98	83.033	Dipodomys_ordii
ENSXETG00000009698	crnkl1	99	88.728	ENSDORG00000000394	-	99	88.728	Dipodomys_ordii
ENSXETG00000009698	crnkl1	97	82.335	ENSDORG00000030174	-	99	82.335	Dipodomys_ordii
ENSXETG00000009698	crnkl1	97	67.751	FBgn0000377	crn	96	67.751	Drosophila_melanogaster
ENSXETG00000009698	crnkl1	100	79.565	ENSETEG00000003711	CRNKL1	84	79.565	Echinops_telfairi
ENSXETG00000009698	crnkl1	99	60.990	ENSEBUG00000013461	crnkl1	97	57.558	Eptatretus_burgeri
ENSXETG00000009698	crnkl1	99	91.121	ENSEASG00005002072	CRNKL1	99	91.121	Equus_asinus_asinus
ENSXETG00000009698	crnkl1	99	91.121	ENSECAG00000022215	CRNKL1	99	91.121	Equus_caballus
ENSXETG00000009698	crnkl1	99	87.977	ENSEEUG00000000413	CRNKL1	92	88.064	Erinaceus_europaeus
ENSXETG00000009698	crnkl1	97	86.567	ENSELUG00000015424	crnkl1	96	85.630	Esox_lucius
ENSXETG00000009698	crnkl1	99	91.121	ENSFCAG00000000714	CRNKL1	99	91.121	Felis_catus
ENSXETG00000009698	crnkl1	98	88.856	ENSFALG00000004611	CRNKL1	100	88.856	Ficedula_albicollis
ENSXETG00000009698	crnkl1	99	89.912	ENSFDAG00000000604	CRNKL1	99	89.811	Fukomys_damarensis
ENSXETG00000009698	crnkl1	98	86.095	ENSFHEG00000013163	crnkl1	90	84.682	Fundulus_heteroclitus
ENSXETG00000009698	crnkl1	97	86.248	ENSGMOG00000007609	crnkl1	93	85.651	Gadus_morhua
ENSXETG00000009698	crnkl1	100	89.520	ENSGALG00000008429	CRNKL1	100	90.407	Gallus_gallus
ENSXETG00000009698	crnkl1	98	86.478	ENSGAFG00000014249	crnkl1	89	85.882	Gambusia_affinis
ENSXETG00000009698	crnkl1	99	87.059	ENSGACG00000011852	crnkl1	91	87.059	Gasterosteus_aculeatus
ENSXETG00000009698	crnkl1	96	89.954	ENSGAGG00000021233	CRNKL1	100	89.970	Gopherus_agassizii
ENSXETG00000009698	crnkl1	99	89.956	ENSGGOG00000014176	CRNKL1	99	89.956	Gorilla_gorilla
ENSXETG00000009698	crnkl1	97	88.174	ENSHBUG00000005246	crnkl1	88	88.174	Haplochromis_burtoni
ENSXETG00000009698	crnkl1	99	89.665	ENSHGLG00000010856	CRNKL1	99	89.665	Heterocephalus_glaber_female
ENSXETG00000009698	crnkl1	99	89.665	ENSHGLG00100011521	CRNKL1	99	89.665	Heterocephalus_glaber_male
ENSXETG00000009698	crnkl1	97	85.800	ENSHCOG00000006420	crnkl1	99	84.134	Hippocampus_comes
ENSXETG00000009698	crnkl1	94	88.290	ENSIPUG00000006751	crnkl1	93	86.248	Ictalurus_punctatus
ENSXETG00000009698	crnkl1	92	68.917	ENSIPUG00000000315	-	99	70.126	Ictalurus_punctatus
ENSXETG00000009698	crnkl1	97	74.962	ENSIPUG00000006836	-	99	75.074	Ictalurus_punctatus
ENSXETG00000009698	crnkl1	99	90.247	ENSSTOG00000014747	CRNKL1	99	90.247	Ictidomys_tridecemlineatus
ENSXETG00000009698	crnkl1	99	89.174	ENSJJAG00000016926	Crnkl1	99	89.174	Jaculus_jaculus
ENSXETG00000009698	crnkl1	100	85.362	ENSKMAG00000003620	crnkl1	88	85.962	Kryptolebias_marmoratus
ENSXETG00000009698	crnkl1	97	72.444	ENSLBEG00000003543	crnkl1	93	72.872	Labrus_bergylta
ENSXETG00000009698	crnkl1	99	88.726	ENSLACG00000001129	CRNKL1	99	88.726	Latimeria_chalumnae
ENSXETG00000009698	crnkl1	97	89.339	ENSLOCG00000016889	crnkl1	94	88.889	Lepisosteus_oculatus
ENSXETG00000009698	crnkl1	99	90.116	ENSLAFG00000004512	CRNKL1	99	90.843	Loxodonta_africana
ENSXETG00000009698	crnkl1	99	89.811	ENSMFAG00000039893	CRNKL1	99	89.811	Macaca_fascicularis
ENSXETG00000009698	crnkl1	99	89.811	ENSMMUG00000007709	CRNKL1	99	89.811	Macaca_mulatta
ENSXETG00000009698	crnkl1	99	89.811	ENSMNEG00000037490	CRNKL1	99	89.811	Macaca_nemestrina
ENSXETG00000009698	crnkl1	99	89.811	ENSMLEG00000034885	CRNKL1	99	89.811	Mandrillus_leucophaeus
ENSXETG00000009698	crnkl1	100	84.716	ENSMAMG00000008757	crnkl1	91	85.320	Mastacembelus_armatus
ENSXETG00000009698	crnkl1	97	88.174	ENSMZEG00005022345	crnkl1	89	88.174	Maylandia_zebra
ENSXETG00000009698	crnkl1	99	89.971	ENSMGAG00000003452	CRNKL1	94	89.971	Meleagris_gallopavo
ENSXETG00000009698	crnkl1	99	90.393	ENSMAUG00000020764	Crnkl1	99	90.393	Mesocricetus_auratus
ENSXETG00000009698	crnkl1	99	90.247	ENSMICG00000006048	CRNKL1	99	90.247	Microcebus_murinus
ENSXETG00000009698	crnkl1	96	64.910	ENSMOCG00000004179	-	96	65.082	Microtus_ochrogaster
ENSXETG00000009698	crnkl1	99	82.665	ENSMOCG00000000681	-	99	82.665	Microtus_ochrogaster
ENSXETG00000009698	crnkl1	92	86.076	ENSMMOG00000017601	crnkl1	97	86.076	Mola_mola
ENSXETG00000009698	crnkl1	100	88.539	ENSMODG00000005961	-	99	88.539	Monodelphis_domestica
ENSXETG00000009698	crnkl1	99	83.697	ENSMODG00000010857	-	99	83.697	Monodelphis_domestica
ENSXETG00000009698	crnkl1	99	62.353	ENSMALG00000011211	crnkl1	89	64.023	Monopterus_albus
ENSXETG00000009698	crnkl1	99	90.539	MGP_CAROLIEiJ_G0024394	Crnkl1	99	90.539	Mus_caroli
ENSXETG00000009698	crnkl1	99	90.684	ENSMUSG00000001767	Crnkl1	99	90.684	Mus_musculus
ENSXETG00000009698	crnkl1	99	89.083	MGP_PahariEiJ_G0025838	Crnkl1	99	89.083	Mus_pahari
ENSXETG00000009698	crnkl1	99	90.684	MGP_SPRETEiJ_G0025312	Crnkl1	99	90.684	Mus_spretus
ENSXETG00000009698	crnkl1	99	91.121	ENSMPUG00000001226	CRNKL1	99	91.121	Mustela_putorius_furo
ENSXETG00000009698	crnkl1	99	90.616	ENSMLUG00000016513	CRNKL1	89	90.684	Myotis_lucifugus
ENSXETG00000009698	crnkl1	99	88.412	ENSNGAG00000023097	Crnkl1	99	88.412	Nannospalax_galili
ENSXETG00000009698	crnkl1	97	88.323	ENSNBRG00000007867	crnkl1	88	88.323	Neolamprologus_brichardi
ENSXETG00000009698	crnkl1	99	86.900	ENSNLEG00000009862	CRNKL1	99	86.900	Nomascus_leucogenys
ENSXETG00000009698	crnkl1	100	83.647	ENSMEUG00000002361	-	100	83.647	Notamacropus_eugenii
ENSXETG00000009698	crnkl1	98	91.220	ENSMEUG00000012167	-	100	91.220	Notamacropus_eugenii
ENSXETG00000009698	crnkl1	86	60.694	ENSOPRG00000009242	-	61	60.694	Ochotona_princeps
ENSXETG00000009698	crnkl1	99	89.811	ENSODEG00000012175	CRNKL1	99	89.811	Octodon_degus
ENSXETG00000009698	crnkl1	98	87.870	ENSONIG00000018728	crnkl1	89	87.870	Oreochromis_niloticus
ENSXETG00000009698	crnkl1	99	89.868	ENSOCUG00000015484	CRNKL1	82	90.525	Oryctolagus_cuniculus
ENSXETG00000009698	crnkl1	100	83.866	ENSORLG00000017240	crnkl1	96	81.871	Oryzias_latipes
ENSXETG00000009698	crnkl1	100	84.279	ENSORLG00020001742	crnkl1	92	84.884	Oryzias_latipes_hni
ENSXETG00000009698	crnkl1	100	84.012	ENSORLG00015019564	crnkl1	92	84.615	Oryzias_latipes_hsok
ENSXETG00000009698	crnkl1	100	84.302	ENSOMEG00000019895	crnkl1	92	84.906	Oryzias_melastigma
ENSXETG00000009698	crnkl1	99	89.956	ENSOGAG00000011544	CRNKL1	99	89.956	Otolemur_garnettii
ENSXETG00000009698	crnkl1	99	90.869	ENSOARG00000002150	CRNKL1	89	90.936	Ovis_aries
ENSXETG00000009698	crnkl1	99	89.296	ENSPPAG00000027847	CRNKL1	83	89.374	Pan_paniscus
ENSXETG00000009698	crnkl1	99	91.121	ENSPPRG00000001955	CRNKL1	99	91.121	Panthera_pardus
ENSXETG00000009698	crnkl1	99	91.121	ENSPTIG00000007393	CRNKL1	99	91.121	Panthera_tigris_altaica
ENSXETG00000009698	crnkl1	99	89.956	ENSPTRG00000030609	CRNKL1	99	89.956	Pan_troglodytes
ENSXETG00000009698	crnkl1	99	89.811	ENSPANG00000017420	CRNKL1	99	89.811	Papio_anubis
ENSXETG00000009698	crnkl1	97	84.234	ENSPKIG00000017093	crnkl1	88	83.676	Paramormyrops_kingsleyae
ENSXETG00000009698	crnkl1	99	90.365	ENSPSIG00000012705	CRNKL1	99	90.365	Pelodiscus_sinensis
ENSXETG00000009698	crnkl1	99	80.263	ENSPMGG00000006263	crnkl1	97	79.215	Periophthalmus_magnuspinnatus
ENSXETG00000009698	crnkl1	99	90.684	ENSPEMG00000000073	-	99	90.684	Peromyscus_maniculatus_bairdii
ENSXETG00000009698	crnkl1	99	81.567	ENSPMAG00000002250	crnkl1	99	81.567	Petromyzon_marinus
ENSXETG00000009698	crnkl1	100	90.580	ENSPCIG00000025825	CRNKL1	96	90.580	Phascolarctos_cinereus
ENSXETG00000009698	crnkl1	98	86.310	ENSPFOG00000005102	crnkl1	92	85.777	Poecilia_formosa
ENSXETG00000009698	crnkl1	98	86.330	ENSPLAG00000007288	crnkl1	89	85.673	Poecilia_latipinna
ENSXETG00000009698	crnkl1	98	86.458	ENSPMEG00000008865	crnkl1	93	85.924	Poecilia_mexicana
ENSXETG00000009698	crnkl1	97	86.826	ENSPREG00000012615	crnkl1	92	84.884	Poecilia_reticulata
ENSXETG00000009698	crnkl1	99	89.883	ENSPPYG00000010747	CRNKL1	81	89.956	Pongo_abelii
ENSXETG00000009698	crnkl1	99	85.484	ENSPCAG00000003296	CRNKL1	85	85.590	Procavia_capensis
ENSXETG00000009698	crnkl1	99	89.296	ENSPCOG00000017608	CRNKL1	83	89.374	Propithecus_coquereli
ENSXETG00000009698	crnkl1	99	90.762	ENSPVAG00000006207	CRNKL1	83	90.830	Pteropus_vampyrus
ENSXETG00000009698	crnkl1	97	88.024	ENSPNYG00000001977	crnkl1	88	88.024	Pundamilia_nyererei
ENSXETG00000009698	crnkl1	98	88.690	ENSPNAG00000001507	crnkl1	98	83.478	Pygocentrus_nattereri
ENSXETG00000009698	crnkl1	99	90.684	ENSRNOG00000010587	Crnkl1	99	90.684	Rattus_norvegicus
ENSXETG00000009698	crnkl1	99	90.539	ENSRNOG00000040045	Crnkl1	99	90.539	Rattus_norvegicus
ENSXETG00000009698	crnkl1	99	89.665	ENSRBIG00000031770	CRNKL1	99	89.665	Rhinopithecus_bieti
ENSXETG00000009698	crnkl1	99	89.520	ENSRROG00000040450	CRNKL1	99	89.520	Rhinopithecus_roxellana
ENSXETG00000009698	crnkl1	94	38.061	YLR117C	CLF1	99	38.150	Saccharomyces_cerevisiae
ENSXETG00000009698	crnkl1	99	89.811	ENSSBOG00000029672	CRNKL1	99	89.811	Saimiri_boliviensis_boliviensis
ENSXETG00000009698	crnkl1	96	72.466	ENSSHAG00000011199	CRNKL1	99	72.466	Sarcophilus_harrisii
ENSXETG00000009698	crnkl1	97	87.029	ENSSFOG00015000946	crnkl1	89	86.217	Scleropages_formosus
ENSXETG00000009698	crnkl1	99	85.546	ENSSMAG00000007933	crnkl1	88	86.156	Scophthalmus_maximus
ENSXETG00000009698	crnkl1	99	79.767	ENSSDUG00000012625	crnkl1	88	79.767	Seriola_dumerili
ENSXETG00000009698	crnkl1	99	86.026	ENSSLDG00000021413	crnkl1	89	86.026	Seriola_lalandi_dorsalis
ENSXETG00000009698	crnkl1	99	90.247	ENSSARG00000006443	CRNKL1	82	90.247	Sorex_araneus
ENSXETG00000009698	crnkl1	99	90.102	ENSSPUG00000005254	CRNKL1	99	90.102	Sphenodon_punctatus
ENSXETG00000009698	crnkl1	100	85.735	ENSSPAG00000016150	crnkl1	89	86.337	Stegastes_partitus
ENSXETG00000009698	crnkl1	99	90.975	ENSSSCG00000038587	CRNKL1	99	90.975	Sus_scrofa
ENSXETG00000009698	crnkl1	100	88.372	ENSTGUG00000007645	CRNKL1	98	89.099	Taeniopygia_guttata
ENSXETG00000009698	crnkl1	98	81.696	ENSTRUG00000015417	crnkl1	91	80.378	Takifugu_rubripes
ENSXETG00000009698	crnkl1	97	86.228	ENSTNIG00000010710	crnkl1	98	85.651	Tetraodon_nigroviridis
ENSXETG00000009698	crnkl1	91	89.457	ENSTBEG00000001304	CRNKL1	82	89.540	Tupaia_belangeri
ENSXETG00000009698	crnkl1	91	87.220	ENSTTRG00000000484	CRNKL1	81	87.322	Tursiops_truncatus
ENSXETG00000009698	crnkl1	99	91.121	ENSUAMG00000018586	CRNKL1	99	91.121	Ursus_americanus
ENSXETG00000009698	crnkl1	99	91.121	ENSUMAG00000024957	CRNKL1	99	91.121	Ursus_maritimus
ENSXETG00000009698	crnkl1	99	90.762	ENSVVUG00000012559	CRNKL1	82	90.830	Vulpes_vulpes
ENSXETG00000009698	crnkl1	98	86.458	ENSXCOG00000000824	crnkl1	90	86.095	Xiphophorus_couchianus
ENSXETG00000009698	crnkl1	98	86.607	ENSXMAG00000006896	crnkl1	90	86.243	Xiphophorus_maculatus