EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000009891 (Gene tree)
Gene ID: -
Gene Symbol: ptcd1
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 16404 bases
Position: chrGL172638.1:1611145-1627548
Accession: XB-GENE-940576
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000021779	PPR	PF01535.20	2.2e-16	1	3
ENSXETP00000021779	PPR	PF01535.20	2.2e-16	2	3
ENSXETP00000021779	PPR	PF01535.20	2.2e-16	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000021779	-	2237	XM_002931521	ENSXETP00000021779	686 (aa)	XP_002931567	F6RPI9

Gene Model

Click here to download ENSXETG00000009891's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000009891's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000009891	ptcd1	88	52.138	ENSG00000248919	ATP5MF-PTCD1	81	52.310	Homo_sapiens
ENSXETG00000009891	ptcd1	88	52.138	ENSG00000106246	PTCD1	86	52.310	Homo_sapiens
ENSXETG00000009891	ptcd1	80	46.098	ENSAPOG00000010679	ptcd1	85	46.098	Acanthochromis_polyacanthus
ENSXETG00000009891	ptcd1	93	51.347	ENSAMEG00000006224	-	86	51.829	Ailuropoda_melanoleuca
ENSXETG00000009891	ptcd1	90	46.252	ENSACIG00000017861	ptcd1	88	46.252	Amphilophus_citrinellus
ENSXETG00000009891	ptcd1	92	45.191	ENSAOCG00000020741	-	91	45.191	Amphiprion_ocellaris
ENSXETG00000009891	ptcd1	88	44.657	ENSAOCG00000022617	ptcd1	92	44.657	Amphiprion_ocellaris
ENSXETG00000009891	ptcd1	92	44.769	ENSAPEG00000022632	ptcd1	91	44.769	Amphiprion_percula
ENSXETG00000009891	ptcd1	85	49.576	ENSATEG00000007016	ptcd1	81	49.404	Anabas_testudineus
ENSXETG00000009891	ptcd1	86	56.811	ENSAPLG00000006862	-	94	56.066	Anas_platyrhynchos
ENSXETG00000009891	ptcd1	90	54.834	ENSACAG00000012871	-	81	54.864	Anolis_carolinensis
ENSXETG00000009891	ptcd1	86	52.570	ENSANAG00000035790	-	90	51.442	Aotus_nancymaae
ENSXETG00000009891	ptcd1	84	45.960	ENSACLG00000002824	ptcd1	80	45.960	Astatotilapia_calliptera
ENSXETG00000009891	ptcd1	91	46.412	ENSAMXG00000037292	ptcd1	89	46.929	Astyanax_mexicanus
ENSXETG00000009891	ptcd1	92	52.315	ENSBTAG00000020440	-	78	52.582	Bos_taurus
ENSXETG00000009891	ptcd1	87	52.059	ENSCJAG00000015815	-	88	51.530	Callithrix_jacchus
ENSXETG00000009891	ptcd1	90	53.386	ENSCAFG00000015055	-	81	54.106	Canis_familiaris
ENSXETG00000009891	ptcd1	90	53.386	ENSCAFG00020014480	-	81	54.106	Canis_lupus_dingo
ENSXETG00000009891	ptcd1	91	52.241	ENSCHIG00000027000	-	89	52.987	Capra_hircus
ENSXETG00000009891	ptcd1	88	51.846	ENSTSYG00000029495	-	92	50.076	Carlito_syrichta
ENSXETG00000009891	ptcd1	88	53.236	ENSCAPG00000014660	-	90	54.409	Cavia_aperea
ENSXETG00000009891	ptcd1	88	54.045	ENSCPOG00000001780	-	84	55.241	Cavia_porcellus
ENSXETG00000009891	ptcd1	87	52.467	ENSCCAG00000034025	-	92	50.847	Cebus_capucinus
ENSXETG00000009891	ptcd1	87	52.124	ENSCATG00000040859	-	93	49.705	Cercocebus_atys
ENSXETG00000009891	ptcd1	87	53.377	ENSCLAG00000006354	-	87	53.496	Chinchilla_lanigera
ENSXETG00000009891	ptcd1	80	52.878	ENSCSAG00000017794	-	92	49.451	Chlorocebus_sabaeus
ENSXETG00000009891	ptcd1	87	56.916	ENSCPBG00000020866	-	97	52.083	Chrysemys_picta_bellii
ENSXETG00000009891	ptcd1	89	51.535	ENSCANG00000023441	-	86	52.318	Colobus_angolensis_palliatus
ENSXETG00000009891	ptcd1	96	50.000	ENSCGRG00001023686	Ptcd1	94	50.904	Cricetulus_griseus_chok1gshd
ENSXETG00000009891	ptcd1	88	53.355	ENSCGRG00000015031	Ptcd1	84	54.090	Cricetulus_griseus_crigri
ENSXETG00000009891	ptcd1	85	47.892	ENSCSEG00000002378	ptcd1	81	48.061	Cynoglossus_semilaevis
ENSXETG00000009891	ptcd1	91	48.006	ENSCVAG00000015826	ptcd1	87	48.006	Cyprinodon_variegatus
ENSXETG00000009891	ptcd1	92	47.476	ENSCVAG00000003621	ptcd1	94	47.393	Cyprinodon_variegatus
ENSXETG00000009891	ptcd1	86	48.933	ENSDARG00000076176	ptcd1	85	48.926	Danio_rerio
ENSXETG00000009891	ptcd1	88	51.299	ENSDNOG00000009957	-	94	48.834	Dasypus_novemcinctus
ENSXETG00000009891	ptcd1	95	51.488	ENSDORG00000000740	Ptcd1	96	51.786	Dipodomys_ordii
ENSXETG00000009891	ptcd1	93	38.881	ENSEBUG00000014515	ptcd1	96	40.989	Eptatretus_burgeri
ENSXETG00000009891	ptcd1	91	51.623	ENSEASG00005002480	-	88	52.283	Equus_asinus_asinus
ENSXETG00000009891	ptcd1	91	51.932	ENSECAG00000016617	-	88	52.366	Equus_caballus
ENSXETG00000009891	ptcd1	94	42.982	ENSELUG00000016517	ptcd1	89	43.731	Esox_lucius
ENSXETG00000009891	ptcd1	92	53.571	ENSFCAG00000015069	-	89	54.041	Felis_catus
ENSXETG00000009891	ptcd1	87	55.466	ENSFALG00000013803	-	86	55.414	Ficedula_albicollis
ENSXETG00000009891	ptcd1	88	51.639	ENSFDAG00000006393	-	84	52.694	Fukomys_damarensis
ENSXETG00000009891	ptcd1	75	48.256	ENSFHEG00000012491	ptcd1	87	48.256	Fundulus_heteroclitus
ENSXETG00000009891	ptcd1	83	45.167	ENSGMOG00000007639	ptcd1	91	45.167	Gadus_morhua
ENSXETG00000009891	ptcd1	87	57.097	ENSGALG00000004711	-	84	58.182	Gallus_gallus
ENSXETG00000009891	ptcd1	85	47.746	ENSGAFG00000013175	ptcd1	83	47.746	Gambusia_affinis
ENSXETG00000009891	ptcd1	85	47.288	ENSGACG00000016607	ptcd1	90	47.288	Gasterosteus_aculeatus
ENSXETG00000009891	ptcd1	88	52.868	ENSGAGG00000021832	-	93	53.023	Gopherus_agassizii
ENSXETG00000009891	ptcd1	88	51.948	ENSGGOG00000015123	-	89	51.185	Gorilla_gorilla
ENSXETG00000009891	ptcd1	84	46.256	ENSHBUG00000018275	ptcd1	80	46.256	Haplochromis_burtoni
ENSXETG00000009891	ptcd1	87	53.125	ENSHGLG00000017621	-	84	54.209	Heterocephalus_glaber_female
ENSXETG00000009891	ptcd1	87	53.125	ENSHGLG00100007218	-	84	54.209	Heterocephalus_glaber_male
ENSXETG00000009891	ptcd1	87	43.842	ENSHCOG00000010784	ptcd1	85	44.518	Hippocampus_comes
ENSXETG00000009891	ptcd1	87	54.366	ENSSTOG00000001682	-	84	54.485	Ictidomys_tridecemlineatus
ENSXETG00000009891	ptcd1	96	50.885	ENSJJAG00000000319	Ptcd1	96	50.952	Jaculus_jaculus
ENSXETG00000009891	ptcd1	86	47.324	ENSKMAG00000008708	ptcd1	82	47.492	Kryptolebias_marmoratus
ENSXETG00000009891	ptcd1	89	45.907	ENSLBEG00000008061	ptcd1	81	48.154	Labrus_bergylta
ENSXETG00000009891	ptcd1	89	56.800	ENSLACG00000011172	ptcd1	85	57.401	Latimeria_chalumnae
ENSXETG00000009891	ptcd1	88	52.449	ENSLOCG00000004833	ptcd1	96	52.202	Lepisosteus_oculatus
ENSXETG00000009891	ptcd1	87	53.871	ENSLAFG00000002588	-	84	54.377	Loxodonta_africana
ENSXETG00000009891	ptcd1	87	52.373	ENSMFAG00000041324	-	93	49.926	Macaca_fascicularis
ENSXETG00000009891	ptcd1	87	52.373	ENSMMUG00000030408	-	93	49.926	Macaca_mulatta
ENSXETG00000009891	ptcd1	87	52.815	ENSMNEG00000043786	-	93	50.299	Macaca_nemestrina
ENSXETG00000009891	ptcd1	87	37.582	ENSMLEG00000031179	-	93	39.525	Mandrillus_leucophaeus
ENSXETG00000009891	ptcd1	85	49.660	ENSMAMG00000007623	ptcd1	80	49.660	Mastacembelus_armatus
ENSXETG00000009891	ptcd1	84	45.960	ENSMZEG00005012722	ptcd1	80	45.960	Maylandia_zebra
ENSXETG00000009891	ptcd1	88	56.402	ENSMGAG00000004211	-	79	57.214	Meleagris_gallopavo
ENSXETG00000009891	ptcd1	92	50.855	ENSMICG00000017428	-	89	52.126	Microcebus_murinus
ENSXETG00000009891	ptcd1	84	47.423	ENSMMOG00000020243	ptcd1	88	47.423	Mola_mola
ENSXETG00000009891	ptcd1	88	53.537	ENSMODG00000001350	-	82	53.871	Monodelphis_domestica
ENSXETG00000009891	ptcd1	88	48.112	ENSMALG00000018442	ptcd1	83	48.112	Monopterus_albus
ENSXETG00000009891	ptcd1	96	50.221	MGP_CAROLIEiJ_G0028011	Ptcd1	94	51.286	Mus_caroli
ENSXETG00000009891	ptcd1	96	49.046	ENSMUSG00000029624	Ptcd1	94	50.835	Mus_musculus
ENSXETG00000009891	ptcd1	96	50.074	MGP_PahariEiJ_G0024580	Ptcd1	94	51.145	Mus_pahari
ENSXETG00000009891	ptcd1	96	49.046	MGP_SPRETEiJ_G0029012	Ptcd1	94	50.610	Mus_spretus
ENSXETG00000009891	ptcd1	87	53.630	ENSMPUG00000016518	-	84	54.545	Mustela_putorius_furo
ENSXETG00000009891	ptcd1	87	53.507	ENSMLUG00000010994	-	84	52.188	Myotis_lucifugus
ENSXETG00000009891	ptcd1	86	45.990	ENSNBRG00000010079	ptcd1	85	46.382	Neolamprologus_brichardi
ENSXETG00000009891	ptcd1	78	52.593	ENSNLEG00000011060	-	88	53.524	Nomascus_leucogenys
ENSXETG00000009891	ptcd1	88	54.146	ENSMEUG00000006930	-	85	54.333	Notamacropus_eugenii
ENSXETG00000009891	ptcd1	79	55.814	ENSOPRG00000013647	-	82	50.490	Ochotona_princeps
ENSXETG00000009891	ptcd1	84	44.925	ENSONIG00000003168	ptcd1	95	44.925	Oreochromis_niloticus
ENSXETG00000009891	ptcd1	81	50.436	ENSOANG00000007728	-	74	50.436	Ornithorhynchus_anatinus
ENSXETG00000009891	ptcd1	92	50.305	ENSOCUG00000010584	-	88	51.090	Oryctolagus_cuniculus
ENSXETG00000009891	ptcd1	86	46.346	ENSORLG00000009275	ptcd1	85	46.346	Oryzias_latipes
ENSXETG00000009891	ptcd1	86	46.512	ENSORLG00020000988	ptcd1	85	46.512	Oryzias_latipes_hni
ENSXETG00000009891	ptcd1	86	45.861	ENSORLG00015010557	ptcd1	86	45.861	Oryzias_latipes_hsok
ENSXETG00000009891	ptcd1	84	48.630	ENSOMEG00000020627	ptcd1	85	48.370	Oryzias_melastigma
ENSXETG00000009891	ptcd1	87	51.382	ENSOGAG00000010877	-	85	52.152	Otolemur_garnettii
ENSXETG00000009891	ptcd1	91	49.074	ENSOARG00000018676	-	89	49.765	Ovis_aries
ENSXETG00000009891	ptcd1	88	52.138	ENSPPAG00000036024	-	86	52.145	Pan_paniscus
ENSXETG00000009891	ptcd1	93	52.719	ENSPPRG00000003478	-	92	53.077	Panthera_pardus
ENSXETG00000009891	ptcd1	88	52.303	ENSPTRG00000019452	-	86	52.310	Pan_troglodytes
ENSXETG00000009891	ptcd1	87	52.209	ENSPANG00000016730	-	93	49.778	Papio_anubis
ENSXETG00000009891	ptcd1	93	47.662	ENSPKIG00000014215	ptcd1	90	48.457	Paramormyrops_kingsleyae
ENSXETG00000009891	ptcd1	86	55.333	ENSPSIG00000011184	-	99	55.853	Pelodiscus_sinensis
ENSXETG00000009891	ptcd1	74	39.464	ENSPMAG00000009667	ptcd1	99	39.464	Petromyzon_marinus
ENSXETG00000009891	ptcd1	88	54.531	ENSPCIG00000024778	-	84	54.006	Phascolarctos_cinereus
ENSXETG00000009891	ptcd1	87	46.290	ENSPFOG00000004458	ptcd1	84	46.926	Poecilia_formosa
ENSXETG00000009891	ptcd1	87	46.429	ENSPLAG00000011051	ptcd1	84	47.068	Poecilia_latipinna
ENSXETG00000009891	ptcd1	87	47.087	ENSPMEG00000020547	ptcd1	84	47.087	Poecilia_mexicana
ENSXETG00000009891	ptcd1	86	47.333	ENSPREG00000000059	ptcd1	84	47.360	Poecilia_reticulata
ENSXETG00000009891	ptcd1	88	52.209	ENSPPYG00000017377	-	89	53.209	Pongo_abelii
ENSXETG00000009891	ptcd1	77	59.829	ENSPCAG00000001852	-	81	59.829	Procavia_capensis
ENSXETG00000009891	ptcd1	95	49.408	ENSPCOG00000018596	-	92	51.067	Propithecus_coquereli
ENSXETG00000009891	ptcd1	65	58.586	ENSPVAG00000007529	-	66	58.586	Pteropus_vampyrus
ENSXETG00000009891	ptcd1	84	46.218	ENSPNYG00000019993	ptcd1	80	46.218	Pundamilia_nyererei
ENSXETG00000009891	ptcd1	97	44.508	ENSPNAG00000014931	ptcd1	98	44.936	Pygocentrus_nattereri
ENSXETG00000009891	ptcd1	94	52.977	ENSRNOG00000000987	Ptcd1	94	53.159	Rattus_norvegicus
ENSXETG00000009891	ptcd1	89	51.696	ENSRBIG00000043393	-	86	52.483	Rhinopithecus_bieti
ENSXETG00000009891	ptcd1	89	51.696	ENSRROG00000036420	-	86	52.483	Rhinopithecus_roxellana
ENSXETG00000009891	ptcd1	90	50.641	ENSSBOG00000024114	-	92	49.228	Saimiri_boliviensis_boliviensis
ENSXETG00000009891	ptcd1	93	52.576	ENSSHAG00000011376	-	99	52.576	Sarcophilus_harrisii
ENSXETG00000009891	ptcd1	87	52.572	ENSSFOG00015007909	ptcd1	82	53.094	Scleropages_formosus
ENSXETG00000009891	ptcd1	84	45.408	ENSSMAG00000000218	ptcd1	91	45.578	Scophthalmus_maximus
ENSXETG00000009891	ptcd1	88	45.765	ENSSDUG00000015671	ptcd1	84	47.804	Seriola_dumerili
ENSXETG00000009891	ptcd1	88	46.016	ENSSLDG00000014261	ptcd1	83	47.386	Seriola_lalandi_dorsalis
ENSXETG00000009891	ptcd1	87	55.662	ENSSPUG00000003540	-	82	56.006	Sphenodon_punctatus
ENSXETG00000009891	ptcd1	87	46.341	ENSSPAG00000011049	ptcd1	82	46.962	Stegastes_partitus
ENSXETG00000009891	ptcd1	87	51.870	ENSSSCG00000007622	-	95	51.174	Sus_scrofa
ENSXETG00000009891	ptcd1	87	56.230	ENSTGUG00000007563	-	96	57.119	Taeniopygia_guttata
ENSXETG00000009891	ptcd1	84	46.988	ENSTRUG00000013471	ptcd1	79	46.988	Takifugu_rubripes
ENSXETG00000009891	ptcd1	86	45.289	ENSTNIG00000008271	ptcd1	86	45.289	Tetraodon_nigroviridis
ENSXETG00000009891	ptcd1	88	52.894	ENSTBEG00000011021	-	85	53.667	Tupaia_belangeri
ENSXETG00000009891	ptcd1	92	49.696	ENSTTRG00000003006	-	89	50.390	Tursiops_truncatus
ENSXETG00000009891	ptcd1	91	52.283	ENSUAMG00000008049	-	88	52.809	Ursus_americanus
ENSXETG00000009891	ptcd1	86	55.372	ENSVVUG00000008836	-	85	55.426	Vulpes_vulpes
ENSXETG00000009891	ptcd1	85	47.739	ENSXMAG00000015540	ptcd1	82	48.067	Xiphophorus_maculatus