EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000009892 (Gene tree)
Gene ID: -
Gene Symbol: cpsf4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 10351 bases
Position: chrGL172638.1:1601132-1611482
Accession: XB-GENE-948302
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000021783	zf-CCCH	PF00642.24	7.2e-19	1	1
ENSXETP00000021783	zf-CCHC	PF00098.23	3.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000021783	-	1514	-	ENSXETP00000021783	279 (aa)	XP_012825775	Q28FZ4

Gene Model

Click here to download ENSXETG00000009892's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000009892's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000009892	cpsf4	99	57.609	ENSXETG00000004641	cpsf4l	99	57.609

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000009892	cpsf4	100	88.172	ENSG00000160917	CPSF4	100	90.164	Homo_sapiens
ENSXETG00000009892	cpsf4	68	68.229	ENSAPOG00000004921	cpsf4	100	64.583	Acanthochromis_polyacanthus
ENSXETG00000009892	cpsf4	100	88.172	ENSAMEG00000006252	CPSF4	100	88.172	Ailuropoda_melanoleuca
ENSXETG00000009892	cpsf4	100	75.269	ENSACIG00000009248	cpsf4	100	73.571	Amphilophus_citrinellus
ENSXETG00000009892	cpsf4	100	79.570	ENSAOCG00000019616	cpsf4	100	79.570	Amphiprion_ocellaris
ENSXETG00000009892	cpsf4	100	79.570	ENSAPEG00000011679	cpsf4	100	79.570	Amphiprion_percula
ENSXETG00000009892	cpsf4	100	77.778	ENSATEG00000007010	cpsf4	100	77.778	Anabas_testudineus
ENSXETG00000009892	cpsf4	100	87.097	ENSACAG00000012941	CPSF4	89	87.097	Anolis_carolinensis
ENSXETG00000009892	cpsf4	100	88.172	ENSANAG00000021360	CPSF4	100	88.172	Aotus_nancymaae
ENSXETG00000009892	cpsf4	100	78.853	ENSACLG00000010374	cpsf4	100	78.853	Astatotilapia_calliptera
ENSXETG00000009892	cpsf4	100	82.143	ENSAMXG00000031647	cpsf4	100	82.143	Astyanax_mexicanus
ENSXETG00000009892	cpsf4	100	80.645	ENSBTAG00000002090	CPSF4	100	79.211	Bos_taurus
ENSXETG00000009892	cpsf4	100	88.172	ENSCJAG00000015826	CPSF4	100	88.172	Callithrix_jacchus
ENSXETG00000009892	cpsf4	100	88.172	ENSCAFG00000015036	CPSF4	100	88.172	Canis_familiaris
ENSXETG00000009892	cpsf4	100	82.437	ENSCAFG00020014462	CPSF4	100	82.437	Canis_lupus_dingo
ENSXETG00000009892	cpsf4	100	87.814	ENSCHIG00000014313	CPSF4	100	87.814	Capra_hircus
ENSXETG00000009892	cpsf4	100	81.720	ENSTSYG00000005712	-	100	80.287	Carlito_syrichta
ENSXETG00000009892	cpsf4	100	75.357	ENSTSYG00000014604	-	100	73.929	Carlito_syrichta
ENSXETG00000009892	cpsf4	90	74.900	ENSTSYG00000008195	-	99	73.462	Carlito_syrichta
ENSXETG00000009892	cpsf4	82	87.719	ENSCAPG00000013881	CPSF4	87	87.719	Cavia_aperea
ENSXETG00000009892	cpsf4	100	81.362	ENSCPOG00000001783	CPSF4	100	79.928	Cavia_porcellus
ENSXETG00000009892	cpsf4	100	88.172	ENSCCAG00000028291	CPSF4	100	88.172	Cebus_capucinus
ENSXETG00000009892	cpsf4	100	88.172	ENSCATG00000038440	CPSF4	100	88.172	Cercocebus_atys
ENSXETG00000009892	cpsf4	100	88.172	ENSCLAG00000007050	CPSF4	100	88.172	Chinchilla_lanigera
ENSXETG00000009892	cpsf4	100	88.172	ENSCSAG00000017795	CPSF4	100	88.172	Chlorocebus_sabaeus
ENSXETG00000009892	cpsf4	63	76.571	ENSCPBG00000010269	-	100	76.136	Chrysemys_picta_bellii
ENSXETG00000009892	cpsf4	81	89.381	ENSCPBG00000020869	CPSF4	100	89.381	Chrysemys_picta_bellii
ENSXETG00000009892	cpsf4	97	53.875	ENSCING00000021080	-	97	53.650	Ciona_intestinalis
ENSXETG00000009892	cpsf4	96	53.242	ENSCSAVG00000011469	-	97	51.890	Ciona_savignyi
ENSXETG00000009892	cpsf4	100	88.172	ENSCANG00000019384	CPSF4	100	88.172	Colobus_angolensis_palliatus
ENSXETG00000009892	cpsf4	100	81.362	ENSCGRG00001024184	Cpsf4	100	79.928	Cricetulus_griseus_chok1gshd
ENSXETG00000009892	cpsf4	100	88.172	ENSCGRG00000013892	Cpsf4	100	88.172	Cricetulus_griseus_crigri
ENSXETG00000009892	cpsf4	100	78.571	ENSCSEG00000019055	cpsf4	100	77.778	Cynoglossus_semilaevis
ENSXETG00000009892	cpsf4	100	79.570	ENSCVAG00000016528	cpsf4	100	79.211	Cyprinodon_variegatus
ENSXETG00000009892	cpsf4	100	82.206	ENSDARG00000020217	cpsf4	100	82.206	Danio_rerio
ENSXETG00000009892	cpsf4	100	88.172	ENSDNOG00000006344	CPSF4	100	88.172	Dasypus_novemcinctus
ENSXETG00000009892	cpsf4	81	87.665	ENSDORG00000000742	Cpsf4	100	87.665	Dipodomys_ordii
ENSXETG00000009892	cpsf4	100	51.987	FBgn0015621	Clp	99	51.815	Drosophila_melanogaster
ENSXETG00000009892	cpsf4	71	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSXETG00000009892	cpsf4	99	62.816	ENSEBUG00000012552	cpsf4	98	62.094	Eptatretus_burgeri
ENSXETG00000009892	cpsf4	100	81.362	ENSEASG00005002487	CPSF4	100	79.928	Equus_asinus_asinus
ENSXETG00000009892	cpsf4	100	88.172	ENSECAG00000007525	CPSF4	100	88.172	Equus_caballus
ENSXETG00000009892	cpsf4	61	98.507	ENSEEUG00000002158	CPSF4	73	98.507	Erinaceus_europaeus
ENSXETG00000009892	cpsf4	100	79.577	ENSELUG00000011481	cpsf4	100	78.799	Esox_lucius
ENSXETG00000009892	cpsf4	100	88.172	ENSFCAG00000015070	CPSF4	100	88.172	Felis_catus
ENSXETG00000009892	cpsf4	63	56.571	ENSFALG00000012906	-	100	56.571	Ficedula_albicollis
ENSXETG00000009892	cpsf4	100	82.796	ENSFALG00000013799	CPSF4	100	80.287	Ficedula_albicollis
ENSXETG00000009892	cpsf4	91	87.747	ENSFDAG00000014092	CPSF4	100	87.747	Fukomys_damarensis
ENSXETG00000009892	cpsf4	100	78.214	ENSFHEG00000010880	cpsf4	100	77.778	Fundulus_heteroclitus
ENSXETG00000009892	cpsf4	100	74.912	ENSGMOG00000002330	cpsf4	100	74.558	Gadus_morhua
ENSXETG00000009892	cpsf4	100	82.437	ENSGALG00000004714	CPSF4	100	80.287	Gallus_gallus
ENSXETG00000009892	cpsf4	99	34.804	ENSGALG00000004441	-	98	35.204	Gallus_gallus
ENSXETG00000009892	cpsf4	100	78.853	ENSGAFG00000010580	cpsf4	100	78.495	Gambusia_affinis
ENSXETG00000009892	cpsf4	100	72.954	ENSGACG00000007792	cpsf4	100	72.085	Gasterosteus_aculeatus
ENSXETG00000009892	cpsf4	100	89.606	ENSGAGG00000021835	CPSF4	100	89.606	Gopherus_agassizii
ENSXETG00000009892	cpsf4	69	72.917	ENSGAGG00000020579	-	92	76.571	Gopherus_agassizii
ENSXETG00000009892	cpsf4	100	88.172	ENSGGOG00000015131	CPSF4	100	88.172	Gorilla_gorilla
ENSXETG00000009892	cpsf4	100	78.853	ENSHBUG00000013699	cpsf4	100	78.853	Haplochromis_burtoni
ENSXETG00000009892	cpsf4	100	87.189	ENSHGLG00000017150	CPSF4	100	87.189	Heterocephalus_glaber_female
ENSXETG00000009892	cpsf4	87	85.366	ENSHGLG00100009215	-	100	85.366	Heterocephalus_glaber_male
ENSXETG00000009892	cpsf4	67	62.567	ENSHGLG00100017302	-	100	49.462	Heterocephalus_glaber_male
ENSXETG00000009892	cpsf4	100	76.786	ENSHCOG00000004397	cpsf4	100	74.643	Hippocampus_comes
ENSXETG00000009892	cpsf4	100	80.783	ENSIPUG00000017147	cpsf4	100	80.783	Ictalurus_punctatus
ENSXETG00000009892	cpsf4	100	88.172	ENSSTOG00000001688	CPSF4	100	88.172	Ictidomys_tridecemlineatus
ENSXETG00000009892	cpsf4	100	88.172	ENSJJAG00000019426	Cpsf4	100	88.172	Jaculus_jaculus
ENSXETG00000009892	cpsf4	100	76.703	ENSKMAG00000015642	cpsf4	100	76.703	Kryptolebias_marmoratus
ENSXETG00000009892	cpsf4	100	57.348	ENSLACG00000018470	-	100	57.857	Latimeria_chalumnae
ENSXETG00000009892	cpsf4	100	84.643	ENSLACG00000010938	CPSF4	100	84.643	Latimeria_chalumnae
ENSXETG00000009892	cpsf4	100	85.663	ENSLOCG00000004814	cpsf4	100	85.663	Lepisosteus_oculatus
ENSXETG00000009892	cpsf4	100	87.814	ENSLAFG00000000159	CPSF4	100	87.814	Loxodonta_africana
ENSXETG00000009892	cpsf4	100	88.172	ENSMFAG00000001462	CPSF4	100	88.172	Macaca_fascicularis
ENSXETG00000009892	cpsf4	100	88.172	ENSMMUG00000019191	CPSF4	100	88.172	Macaca_mulatta
ENSXETG00000009892	cpsf4	100	88.172	ENSMNEG00000032306	CPSF4	100	88.172	Macaca_nemestrina
ENSXETG00000009892	cpsf4	100	88.172	ENSMLEG00000034721	CPSF4	100	88.172	Mandrillus_leucophaeus
ENSXETG00000009892	cpsf4	100	80.357	ENSMAMG00000006244	cpsf4	100	79.570	Mastacembelus_armatus
ENSXETG00000009892	cpsf4	100	78.853	ENSMZEG00005007515	cpsf4	100	78.853	Maylandia_zebra
ENSXETG00000009892	cpsf4	88	80.408	ENSMGAG00000004235	CPSF4	100	77.959	Meleagris_gallopavo
ENSXETG00000009892	cpsf4	100	88.172	ENSMAUG00000021253	Cpsf4	100	88.172	Mesocricetus_auratus
ENSXETG00000009892	cpsf4	100	88.172	ENSMICG00000017429	CPSF4	100	88.172	Microcebus_murinus
ENSXETG00000009892	cpsf4	100	88.172	ENSMOCG00000014901	Cpsf4	100	88.172	Microtus_ochrogaster
ENSXETG00000009892	cpsf4	100	78.571	ENSMMOG00000001813	cpsf4	100	78.214	Mola_mola
ENSXETG00000009892	cpsf4	100	89.606	ENSMODG00000001367	CPSF4	100	89.606	Monodelphis_domestica
ENSXETG00000009892	cpsf4	100	77.419	ENSMALG00000012611	cpsf4	100	77.419	Monopterus_albus
ENSXETG00000009892	cpsf4	100	88.172	MGP_CAROLIEiJ_G0028012	Cpsf4	100	88.172	Mus_caroli
ENSXETG00000009892	cpsf4	100	88.172	ENSMUSG00000029625	Cpsf4	100	88.172	Mus_musculus
ENSXETG00000009892	cpsf4	100	88.172	MGP_PahariEiJ_G0024581	Cpsf4	100	88.172	Mus_pahari
ENSXETG00000009892	cpsf4	100	88.172	MGP_SPRETEiJ_G0029013	Cpsf4	100	88.172	Mus_spretus
ENSXETG00000009892	cpsf4	100	88.172	ENSMPUG00000016508	CPSF4	100	88.172	Mustela_putorius_furo
ENSXETG00000009892	cpsf4	88	79.592	ENSMLUG00000010980	CPSF4	100	77.959	Myotis_lucifugus
ENSXETG00000009892	cpsf4	100	88.172	ENSNGAG00000001567	Cpsf4	100	88.172	Nannospalax_galili
ENSXETG00000009892	cpsf4	91	77.647	ENSNBRG00000003943	cpsf4	98	77.647	Neolamprologus_brichardi
ENSXETG00000009892	cpsf4	100	85.305	ENSNLEG00000011074	CPSF4	100	85.305	Nomascus_leucogenys
ENSXETG00000009892	cpsf4	100	89.606	ENSMEUG00000006955	CPSF4	100	89.606	Notamacropus_eugenii
ENSXETG00000009892	cpsf4	100	87.814	ENSOPRG00000013663	CPSF4	100	87.814	Ochotona_princeps
ENSXETG00000009892	cpsf4	100	67.138	ENSODEG00000009779	-	100	67.138	Octodon_degus
ENSXETG00000009892	cpsf4	99	66.545	ENSODEG00000018283	-	91	66.909	Octodon_degus
ENSXETG00000009892	cpsf4	100	88.172	ENSODEG00000011181	-	100	88.172	Octodon_degus
ENSXETG00000009892	cpsf4	100	77.778	ENSONIG00000008495	cpsf4	100	77.778	Oreochromis_niloticus
ENSXETG00000009892	cpsf4	88	87.347	ENSOANG00000007729	CPSF4	100	87.347	Ornithorhynchus_anatinus
ENSXETG00000009892	cpsf4	100	51.903	ENSOANG00000009568	-	100	50.519	Ornithorhynchus_anatinus
ENSXETG00000009892	cpsf4	100	88.530	ENSOCUG00000002437	CPSF4	70	88.530	Oryctolagus_cuniculus
ENSXETG00000009892	cpsf4	100	78.853	ENSORLG00000022798	cpsf4	100	78.853	Oryzias_latipes
ENSXETG00000009892	cpsf4	100	78.853	ENSORLG00020008548	cpsf4	100	78.853	Oryzias_latipes_hni
ENSXETG00000009892	cpsf4	100	78.495	ENSORLG00015019575	cpsf4	100	78.495	Oryzias_latipes_hsok
ENSXETG00000009892	cpsf4	100	77.419	ENSOMEG00000005176	cpsf4	100	77.419	Oryzias_melastigma
ENSXETG00000009892	cpsf4	100	88.172	ENSOGAG00000010884	CPSF4	100	88.172	Otolemur_garnettii
ENSXETG00000009892	cpsf4	100	77.739	ENSOARG00000018668	CPSF4	100	77.739	Ovis_aries
ENSXETG00000009892	cpsf4	100	88.172	ENSPPAG00000043355	CPSF4	100	88.172	Pan_paniscus
ENSXETG00000009892	cpsf4	100	88.172	ENSPPRG00000003134	CPSF4	100	88.172	Panthera_pardus
ENSXETG00000009892	cpsf4	90	88.492	ENSPTIG00000005604	CPSF4	90	88.492	Panthera_tigris_altaica
ENSXETG00000009892	cpsf4	100	88.172	ENSPTRG00000019453	CPSF4	100	88.172	Pan_troglodytes
ENSXETG00000009892	cpsf4	100	88.172	ENSPANG00000023123	CPSF4	100	88.172	Papio_anubis
ENSXETG00000009892	cpsf4	100	79.930	ENSPKIG00000014278	cpsf4	100	80.282	Paramormyrops_kingsleyae
ENSXETG00000009892	cpsf4	82	55.022	ENSPSIG00000018198	-	100	54.386	Pelodiscus_sinensis
ENSXETG00000009892	cpsf4	81	88.938	ENSPSIG00000011229	CPSF4	100	88.938	Pelodiscus_sinensis
ENSXETG00000009892	cpsf4	100	69.892	ENSPMGG00000017735	cpsf4	100	67.616	Periophthalmus_magnuspinnatus
ENSXETG00000009892	cpsf4	100	88.172	ENSPEMG00000004508	Cpsf4	100	88.172	Peromyscus_maniculatus_bairdii
ENSXETG00000009892	cpsf4	100	89.606	ENSPCIG00000024776	CPSF4	100	89.606	Phascolarctos_cinereus
ENSXETG00000009892	cpsf4	100	78.853	ENSPFOG00000014912	cpsf4	100	78.495	Poecilia_formosa
ENSXETG00000009892	cpsf4	100	71.685	ENSPLAG00000009599	cpsf4	100	71.685	Poecilia_latipinna
ENSXETG00000009892	cpsf4	100	78.853	ENSPMEG00000009790	cpsf4	100	78.495	Poecilia_mexicana
ENSXETG00000009892	cpsf4	100	78.136	ENSPREG00000018166	cpsf4	100	75.627	Poecilia_reticulata
ENSXETG00000009892	cpsf4	87	87.705	ENSPPYG00000017378	CPSF4	100	87.705	Pongo_abelii
ENSXETG00000009892	cpsf4	100	87.455	ENSPCAG00000001892	CPSF4	100	87.455	Procavia_capensis
ENSXETG00000009892	cpsf4	100	88.172	ENSPCOG00000012771	CPSF4	100	88.172	Propithecus_coquereli
ENSXETG00000009892	cpsf4	100	82.079	ENSPVAG00000007531	CPSF4	100	82.079	Pteropus_vampyrus
ENSXETG00000009892	cpsf4	100	78.853	ENSPNYG00000018559	cpsf4	100	78.853	Pundamilia_nyererei
ENSXETG00000009892	cpsf4	100	82.500	ENSPNAG00000003736	cpsf4	100	82.500	Pygocentrus_nattereri
ENSXETG00000009892	cpsf4	100	81.004	ENSRNOG00000000985	Cpsf4	100	79.570	Rattus_norvegicus
ENSXETG00000009892	cpsf4	87	88.115	ENSRBIG00000033886	CPSF4	100	88.115	Rhinopithecus_bieti
ENSXETG00000009892	cpsf4	100	79.211	ENSRROG00000040431	CPSF4	100	79.928	Rhinopithecus_roxellana
ENSXETG00000009892	cpsf4	100	88.172	ENSSBOG00000020493	CPSF4	100	88.172	Saimiri_boliviensis_boliviensis
ENSXETG00000009892	cpsf4	100	89.606	ENSSHAG00000011533	CPSF4	100	89.606	Sarcophilus_harrisii
ENSXETG00000009892	cpsf4	100	81.119	ENSSFOG00015007883	cpsf4	100	81.469	Scleropages_formosus
ENSXETG00000009892	cpsf4	100	74.552	ENSSMAG00000006374	cpsf4	100	72.043	Scophthalmus_maximus
ENSXETG00000009892	cpsf4	100	78.136	ENSSDUG00000018887	cpsf4	100	78.136	Seriola_dumerili
ENSXETG00000009892	cpsf4	100	78.495	ENSSLDG00000019078	cpsf4	100	78.495	Seriola_lalandi_dorsalis
ENSXETG00000009892	cpsf4	87	88.115	ENSSARG00000012416	CPSF4	100	88.115	Sorex_araneus
ENSXETG00000009892	cpsf4	96	56.716	ENSSPUG00000014803	-	97	56.716	Sphenodon_punctatus
ENSXETG00000009892	cpsf4	100	87.814	ENSSPUG00000003549	CPSF4	100	87.814	Sphenodon_punctatus
ENSXETG00000009892	cpsf4	100	75.986	ENSSPAG00000006174	cpsf4	100	73.118	Stegastes_partitus
ENSXETG00000009892	cpsf4	100	79.211	ENSSSCG00000026896	CPSF4	100	79.928	Sus_scrofa
ENSXETG00000009892	cpsf4	100	81.851	ENSTGUG00000007552	CPSF4	100	79.359	Taeniopygia_guttata
ENSXETG00000009892	cpsf4	100	75.089	ENSTRUG00000024220	cpsf4	100	74.643	Takifugu_rubripes
ENSXETG00000009892	cpsf4	100	75.801	ENSTNIG00000006265	cpsf4	100	76.786	Tetraodon_nigroviridis
ENSXETG00000009892	cpsf4	87	79.098	ENSTBEG00000011406	CPSF4	100	79.098	Tupaia_belangeri
ENSXETG00000009892	cpsf4	100	72.401	ENSTTRG00000003007	CPSF4	100	72.401	Tursiops_truncatus
ENSXETG00000009892	cpsf4	92	79.377	ENSUAMG00000008051	CPSF4	85	77.432	Ursus_americanus
ENSXETG00000009892	cpsf4	100	81.004	ENSUMAG00000009474	CPSF4	100	79.570	Ursus_maritimus
ENSXETG00000009892	cpsf4	100	79.211	ENSVVUG00000008824	CPSF4	100	79.928	Vulpes_vulpes
ENSXETG00000009892	cpsf4	100	78.495	ENSXCOG00000016040	cpsf4	100	78.136	Xiphophorus_couchianus
ENSXETG00000009892	cpsf4	100	78.853	ENSXMAG00000024670	cpsf4	100	78.495	Xiphophorus_maculatus