EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000009895 (Gene tree)
Gene ID: -
Gene Symbol: urb1
Alias: -
Full Name: Xenopus tropicalis URB1 ribosome biogenesis 1 homolog (S. cerevisiae) (urb1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 45473 bases
Position: chrGL173010.1:719036-764508
Accession: NM_001137615
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000021787	Npa1	PF11707.8	4.1e-84	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000021787	-	7620	-	ENSXETP00000021787	2295 (aa)	-	F7CE77

Gene Model

Click here to download ENSXETG00000009895's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000009895's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000009895	urb1	99	50.701	ENSG00000142207	URB1	99	50.238	Homo_sapiens
ENSXETG00000009895	urb1	97	58.289	ENSAPOG00000020308	urb1	99	58.289	Acanthochromis_polyacanthus
ENSXETG00000009895	urb1	99	49.375	ENSAMEG00000011998	URB1	99	49.546	Ailuropoda_melanoleuca
ENSXETG00000009895	urb1	94	44.363	ENSACIG00000003248	urb1	96	44.246	Amphilophus_citrinellus
ENSXETG00000009895	urb1	99	42.260	ENSAOCG00000010364	urb1	99	42.550	Amphiprion_ocellaris
ENSXETG00000009895	urb1	99	44.349	ENSAPEG00000010758	urb1	99	44.717	Amphiprion_percula
ENSXETG00000009895	urb1	99	43.046	ENSATEG00000011790	urb1	99	43.313	Anabas_testudineus
ENSXETG00000009895	urb1	96	56.183	ENSAPLG00000012791	URB1	99	56.183	Anas_platyrhynchos
ENSXETG00000009895	urb1	99	53.497	ENSACAG00000002817	URB1	99	53.497	Anolis_carolinensis
ENSXETG00000009895	urb1	99	50.000	ENSANAG00000024617	URB1	99	49.655	Aotus_nancymaae
ENSXETG00000009895	urb1	98	44.915	ENSACLG00000024865	urb1	99	44.915	Astatotilapia_calliptera
ENSXETG00000009895	urb1	98	41.630	ENSAMXG00000012306	urb1	99	41.586	Astyanax_mexicanus
ENSXETG00000009895	urb1	99	49.313	ENSBTAG00000012412	URB1	99	49.591	Bos_taurus
ENSXETG00000009895	urb1	99	50.022	ENSCJAG00000009118	URB1	99	49.589	Callithrix_jacchus
ENSXETG00000009895	urb1	99	50.064	ENSCAFG00000008892	URB1	99	49.979	Canis_familiaris
ENSXETG00000009895	urb1	99	49.311	ENSCAFG00020025994	-	99	49.225	Canis_lupus_dingo
ENSXETG00000009895	urb1	99	49.935	ENSCAFG00020025987	-	99	49.914	Canis_lupus_dingo
ENSXETG00000009895	urb1	99	49.397	ENSCHIG00000015645	URB1	99	49.376	Capra_hircus
ENSXETG00000009895	urb1	100	50.173	ENSTSYG00000013286	URB1	99	50.129	Carlito_syrichta
ENSXETG00000009895	urb1	99	48.785	ENSCAPG00000015589	URB1	99	48.653	Cavia_aperea
ENSXETG00000009895	urb1	100	49.269	ENSCPOG00000006748	URB1	99	49.182	Cavia_porcellus
ENSXETG00000009895	urb1	99	50.306	ENSCCAG00000021299	URB1	99	49.892	Cebus_capucinus
ENSXETG00000009895	urb1	99	50.830	ENSCATG00000042630	URB1	99	50.475	Cercocebus_atys
ENSXETG00000009895	urb1	100	49.763	ENSCLAG00000005262	URB1	99	49.763	Chinchilla_lanigera
ENSXETG00000009895	urb1	99	49.957	ENSCSAG00000009584	URB1	99	49.614	Chlorocebus_sabaeus
ENSXETG00000009895	urb1	99	57.945	ENSCPBG00000006454	URB1	99	57.902	Chrysemys_picta_bellii
ENSXETG00000009895	urb1	99	50.676	ENSCANG00000031088	URB1	99	50.323	Colobus_angolensis_palliatus
ENSXETG00000009895	urb1	99	49.519	ENSCGRG00001010616	Urb1	99	49.201	Cricetulus_griseus_chok1gshd
ENSXETG00000009895	urb1	98	49.559	ENSCGRG00000015840	Urb1	99	49.559	Cricetulus_griseus_crigri
ENSXETG00000009895	urb1	99	42.735	ENSCSEG00000012616	urb1	99	43.155	Cynoglossus_semilaevis
ENSXETG00000009895	urb1	93	53.452	ENSCVAG00000009076	urb1	99	53.790	Cyprinodon_variegatus
ENSXETG00000009895	urb1	99	44.668	ENSDARG00000060308	urb1	99	44.755	Danio_rerio
ENSXETG00000009895	urb1	84	54.602	ENSDNOG00000015586	URB1	99	54.602	Dasypus_novemcinctus
ENSXETG00000009895	urb1	99	50.475	ENSDORG00000006735	Urb1	99	50.518	Dipodomys_ordii
ENSXETG00000009895	urb1	91	60.109	ENSETEG00000009080	URB1	91	60.109	Echinops_telfairi
ENSXETG00000009895	urb1	98	54.404	ENSEASG00005007711	URB1	98	54.386	Equus_asinus_asinus
ENSXETG00000009895	urb1	96	60.426	ENSECAG00000013206	URB1	99	60.426	Equus_caballus
ENSXETG00000009895	urb1	50	62.343	ENSEEUG00000003626	-	50	62.343	Erinaceus_europaeus
ENSXETG00000009895	urb1	99	44.031	ENSELUG00000020516	urb1	98	44.444	Esox_lucius
ENSXETG00000009895	urb1	99	49.589	ENSFCAG00000002177	URB1	99	49.546	Felis_catus
ENSXETG00000009895	urb1	98	50.395	ENSFALG00000004636	URB1	99	50.307	Ficedula_albicollis
ENSXETG00000009895	urb1	99	49.651	ENSFDAG00000007288	URB1	95	49.439	Fukomys_damarensis
ENSXETG00000009895	urb1	99	41.997	ENSFHEG00000000202	urb1	98	43.814	Fundulus_heteroclitus
ENSXETG00000009895	urb1	93	46.518	ENSGMOG00000001838	urb1	93	46.886	Gadus_morhua
ENSXETG00000009895	urb1	99	55.536	ENSGALG00000015887	URB1	99	55.536	Gallus_gallus
ENSXETG00000009895	urb1	94	52.807	ENSGAFG00000020694	urb1	98	52.807	Gambusia_affinis
ENSXETG00000009895	urb1	99	44.473	ENSGACG00000011703	urb1	98	44.945	Gasterosteus_aculeatus
ENSXETG00000009895	urb1	99	57.543	ENSGAGG00000022544	URB1	99	57.500	Gopherus_agassizii
ENSXETG00000009895	urb1	99	50.633	ENSGGOG00000000285	URB1	99	50.194	Gorilla_gorilla
ENSXETG00000009895	urb1	98	44.959	ENSHBUG00000001904	urb1	99	44.959	Haplochromis_burtoni
ENSXETG00000009895	urb1	99	48.644	ENSHGLG00000004907	URB1	99	48.686	Heterocephalus_glaber_female
ENSXETG00000009895	urb1	99	48.841	ENSHGLG00100010749	URB1	99	48.884	Heterocephalus_glaber_male
ENSXETG00000009895	urb1	72	54.613	ENSHCOG00000018683	urb1	98	54.613	Hippocampus_comes
ENSXETG00000009895	urb1	99	41.126	ENSIPUG00000014721	urb1	98	41.515	Ictalurus_punctatus
ENSXETG00000009895	urb1	99	50.262	ENSSTOG00000004539	URB1	99	50.000	Ictidomys_tridecemlineatus
ENSXETG00000009895	urb1	99	41.753	ENSKMAG00000006001	urb1	98	47.348	Kryptolebias_marmoratus
ENSXETG00000009895	urb1	97	42.576	ENSLBEG00000027208	urb1	99	42.576	Labrus_bergylta
ENSXETG00000009895	urb1	99	51.130	ENSLACG00000017059	URB1	99	51.386	Latimeria_chalumnae
ENSXETG00000009895	urb1	100	48.124	ENSLOCG00000009190	urb1	99	47.995	Lepisosteus_oculatus
ENSXETG00000009895	urb1	99	51.353	ENSLAFG00000010407	URB1	97	51.814	Loxodonta_africana
ENSXETG00000009895	urb1	99	50.437	ENSMFAG00000034391	URB1	97	50.086	Macaca_fascicularis
ENSXETG00000009895	urb1	99	50.393	ENSMMUG00000010295	URB1	99	50.043	Macaca_mulatta
ENSXETG00000009895	urb1	99	49.716	ENSMNEG00000032981	URB1	99	49.374	Macaca_nemestrina
ENSXETG00000009895	urb1	99	50.611	ENSMLEG00000041435	URB1	99	50.259	Mandrillus_leucophaeus
ENSXETG00000009895	urb1	99	43.707	ENSMAMG00000011238	urb1	98	43.982	Mastacembelus_armatus
ENSXETG00000009895	urb1	98	42.527	ENSMZEG00005011862	urb1	99	42.527	Maylandia_zebra
ENSXETG00000009895	urb1	98	55.472	ENSMGAG00000014512	URB1	99	56.004	Meleagris_gallopavo
ENSXETG00000009895	urb1	92	55.908	ENSMAUG00000010516	Urb1	99	55.908	Mesocricetus_auratus
ENSXETG00000009895	urb1	99	50.453	ENSMICG00000016424	URB1	99	50.453	Microcebus_murinus
ENSXETG00000009895	urb1	99	47.368	ENSMOCG00000012613	Urb1	99	47.196	Microtus_ochrogaster
ENSXETG00000009895	urb1	99	51.775	ENSMODG00000021076	URB1	99	51.732	Monodelphis_domestica
ENSXETG00000009895	urb1	93	53.983	ENSMALG00000017411	urb1	97	53.983	Monopterus_albus
ENSXETG00000009895	urb1	99	48.594	MGP_CAROLIEiJ_G0020948	Urb1	99	48.594	Mus_caroli
ENSXETG00000009895	urb1	99	48.465	ENSMUSG00000039929	Urb1	99	48.465	Mus_musculus
ENSXETG00000009895	urb1	99	48.423	MGP_PahariEiJ_G0016653	Urb1	99	48.423	Mus_pahari
ENSXETG00000009895	urb1	99	48.640	MGP_SPRETEiJ_G0021854	Urb1	99	48.640	Mus_spretus
ENSXETG00000009895	urb1	99	50.022	ENSMPUG00000001123	URB1	99	49.892	Mustela_putorius_furo
ENSXETG00000009895	urb1	99	48.429	ENSNGAG00000001905	Urb1	99	48.386	Nannospalax_galili
ENSXETG00000009895	urb1	82	46.378	ENSNBRG00000001049	urb1	98	46.378	Neolamprologus_brichardi
ENSXETG00000009895	urb1	99	49.584	ENSNLEG00000026872	URB1	99	49.244	Nomascus_leucogenys
ENSXETG00000009895	urb1	93	57.582	ENSMEUG00000010828	URB1	94	58.144	Notamacropus_eugenii
ENSXETG00000009895	urb1	99	47.339	ENSOPRG00000013482	URB1	99	47.780	Ochotona_princeps
ENSXETG00000009895	urb1	100	49.569	ENSODEG00000002587	URB1	99	49.505	Octodon_degus
ENSXETG00000009895	urb1	99	44.795	ENSONIG00000005599	urb1	99	45.092	Oreochromis_niloticus
ENSXETG00000009895	urb1	99	50.130	ENSOCUG00000009381	URB1	99	50.216	Oryctolagus_cuniculus
ENSXETG00000009895	urb1	99	43.939	ENSORLG00000003429	urb1	99	44.244	Oryzias_latipes
ENSXETG00000009895	urb1	99	43.766	ENSORLG00020013785	urb1	99	44.069	Oryzias_latipes_hni
ENSXETG00000009895	urb1	97	56.452	ENSORLG00015019421	urb1	99	56.452	Oryzias_latipes_hsok
ENSXETG00000009895	urb1	74	57.597	ENSOMEG00000002094	urb1	96	57.597	Oryzias_melastigma
ENSXETG00000009895	urb1	99	50.590	ENSOGAG00000017140	URB1	99	50.677	Otolemur_garnettii
ENSXETG00000009895	urb1	96	53.037	ENSOARG00000013679	URB1	99	52.345	Ovis_aries
ENSXETG00000009895	urb1	99	50.502	ENSPPAG00000003423	URB1	99	50.065	Pan_paniscus
ENSXETG00000009895	urb1	99	49.611	ENSPPRG00000023131	URB1	99	49.524	Panthera_pardus
ENSXETG00000009895	urb1	88	50.513	ENSPTIG00000016125	URB1	95	50.513	Panthera_tigris_altaica
ENSXETG00000009895	urb1	99	50.371	ENSPTRG00000013852	URB1	99	49.935	Pan_troglodytes
ENSXETG00000009895	urb1	99	50.655	ENSPANG00000021964	URB1	99	50.302	Papio_anubis
ENSXETG00000009895	urb1	99	46.014	ENSPKIG00000003683	urb1	98	46.427	Paramormyrops_kingsleyae
ENSXETG00000009895	urb1	99	48.422	ENSPEMG00000021205	Urb1	98	48.379	Peromyscus_maniculatus_bairdii
ENSXETG00000009895	urb1	79	33.177	ENSPMAG00000009733	URB1	99	35.371	Petromyzon_marinus
ENSXETG00000009895	urb1	99	51.749	ENSPCIG00000016350	URB1	99	52.160	Phascolarctos_cinereus
ENSXETG00000009895	urb1	97	42.787	ENSPLAG00000004371	urb1	99	43.065	Poecilia_latipinna
ENSXETG00000009895	urb1	99	43.644	ENSPMEG00000006634	urb1	99	43.926	Poecilia_mexicana
ENSXETG00000009895	urb1	99	43.742	ENSPREG00000013453	urb1	99	44.107	Poecilia_reticulata
ENSXETG00000009895	urb1	99	50.151	ENSPPYG00000011359	URB1	99	50.086	Pongo_abelii
ENSXETG00000009895	urb1	99	44.483	ENSPCAG00000007430	URB1	99	44.483	Procavia_capensis
ENSXETG00000009895	urb1	99	50.172	ENSPCOG00000022695	URB1	99	50.237	Propithecus_coquereli
ENSXETG00000009895	urb1	99	48.532	ENSPVAG00000000889	URB1	99	48.402	Pteropus_vampyrus
ENSXETG00000009895	urb1	98	45.235	ENSPNYG00000010589	urb1	99	45.235	Pundamilia_nyererei
ENSXETG00000009895	urb1	98	42.144	ENSPNAG00000019324	urb1	99	41.929	Pygocentrus_nattereri
ENSXETG00000009895	urb1	99	48.361	ENSRNOG00000002080	Urb1	99	48.468	Rattus_norvegicus
ENSXETG00000009895	urb1	99	50.414	ENSRBIG00000033122	URB1	99	50.065	Rhinopithecus_bieti
ENSXETG00000009895	urb1	99	50.502	ENSRROG00000040237	URB1	99	50.151	Rhinopithecus_roxellana
ENSXETG00000009895	urb1	99	50.153	ENSSBOG00000027672	URB1	99	50.066	Saimiri_boliviensis_boliviensis
ENSXETG00000009895	urb1	99	51.817	ENSSHAG00000005140	URB1	100	51.773	Sarcophilus_harrisii
ENSXETG00000009895	urb1	88	49.242	ENSSFOG00015000339	urb1	95	49.242	Scleropages_formosus
ENSXETG00000009895	urb1	98	45.355	ENSSMAG00000003782	urb1	99	45.355	Scophthalmus_maximus
ENSXETG00000009895	urb1	99	45.349	ENSSDUG00000012313	urb1	99	45.693	Seriola_dumerili
ENSXETG00000009895	urb1	99	45.329	ENSSLDG00000023179	urb1	99	45.329	Seriola_lalandi_dorsalis
ENSXETG00000009895	urb1	99	55.565	ENSSPUG00000012447	URB1	99	55.589	Sphenodon_punctatus
ENSXETG00000009895	urb1	97	58.824	ENSSPAG00000006325	urb1	99	58.824	Stegastes_partitus
ENSXETG00000009895	urb1	99	49.569	ENSSSCG00000032024	URB1	99	49.569	Sus_scrofa
ENSXETG00000009895	urb1	73	56.688	ENSTGUG00000013442	URB1	100	56.688	Taeniopygia_guttata
ENSXETG00000009895	urb1	98	44.703	ENSTRUG00000009372	urb1	99	44.659	Takifugu_rubripes
ENSXETG00000009895	urb1	99	43.450	ENSTNIG00000016277	urb1	99	43.400	Tetraodon_nigroviridis
ENSXETG00000009895	urb1	74	57.101	ENSTBEG00000010044	URB1	75	57.101	Tupaia_belangeri
ENSXETG00000009895	urb1	90	53.878	ENSTTRG00000007712	URB1	92	54.021	Tursiops_truncatus
ENSXETG00000009895	urb1	99	49.742	ENSUAMG00000012231	URB1	99	49.914	Ursus_americanus
ENSXETG00000009895	urb1	83	60.914	ENSUMAG00000017419	URB1	95	51.603	Ursus_maritimus
ENSXETG00000009895	urb1	68	69.863	ENSVPAG00000001164	URB1	68	69.863	Vicugna_pacos
ENSXETG00000009895	urb1	99	50.237	ENSVVUG00000000551	URB1	99	50.367	Vulpes_vulpes
ENSXETG00000009895	urb1	99	41.638	ENSXCOG00000005500	urb1	99	41.890	Xiphophorus_couchianus
ENSXETG00000009895	urb1	99	41.941	ENSXMAG00000007253	urb1	99	42.198	Xiphophorus_maculatus