EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000010994 (Gene tree)
Gene ID: -
Gene Symbol: parn
Alias: -
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 77996 bases
Position: chrGL172788.1:499312-577307
Accession: XB-GENE-1003103
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000024061	R3H	PF01424.22	2.4e-07	1	1
ENSXETP00000060588	R3H	PF01424.22	3.3e-07	1	1
ENSXETP00000024061	RNA_bind	PF08675.11	2.1e-31	1	1
ENSXETP00000060588	RNA_bind	PF08675.11	2.7e-31	1	1
ENSXETP00000024061	CAF1	PF04857.20	2.4e-91	1	1
ENSXETP00000060588	CAF1	PF04857.20	7.6e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000065027	-	3017	-	ENSXETP00000060588	634 (aa)	-	F6XLZ1
ENSXETT00000024061	-	1694	-	ENSXETP00000024061	525 (aa)	-	F6UAK5

Gene Model

Click here to download ENSXETG00000010994's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000010994's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000010994	parn	100	82.890	ENSG00000140694	PARN	100	81.967	Homo_sapiens
ENSXETG00000010994	parn	100	82.163	ENSAMEG00000011208	PARN	100	74.259	Ailuropoda_melanoleuca
ENSXETG00000010994	parn	100	74.528	ENSACIG00000000619	parn	84	76.119	Amphilophus_citrinellus
ENSXETG00000010994	parn	100	76.326	ENSAOCG00000003465	parn	83	71.259	Amphiprion_ocellaris
ENSXETG00000010994	parn	88	74.946	ENSAPEG00000010661	parn	91	75.000	Amphiprion_percula
ENSXETG00000010994	parn	100	77.547	ENSATEG00000004661	parn	83	72.945	Anabas_testudineus
ENSXETG00000010994	parn	99	83.462	ENSAPLG00000013914	PARN	99	76.825	Anas_platyrhynchos
ENSXETG00000010994	parn	100	81.818	ENSACAG00000004973	PARN	100	73.466	Anolis_carolinensis
ENSXETG00000010994	parn	100	82.700	ENSANAG00000031516	PARN	100	81.967	Aotus_nancymaae
ENSXETG00000010994	parn	100	76.894	ENSACLG00000004742	parn	84	71.502	Astatotilapia_calliptera
ENSXETG00000010994	parn	100	76.571	ENSAMXG00000012390	parn	93	69.655	Astyanax_mexicanus
ENSXETG00000010994	parn	100	80.608	ENSBTAG00000018097	PARN	100	74.350	Bos_taurus
ENSXETG00000010994	parn	100	83.460	ENSCJAG00000015866	PARN	100	81.967	Callithrix_jacchus
ENSXETG00000010994	parn	100	82.129	ENSCAFG00000018795	PARN	100	73.438	Canis_familiaris
ENSXETG00000010994	parn	100	82.129	ENSCAFG00020024126	PARN	100	73.438	Canis_lupus_dingo
ENSXETG00000010994	parn	50	30.556	ENSCAFG00020017742	PNLDC1	89	30.556	Canis_lupus_dingo
ENSXETG00000010994	parn	100	83.080	ENSCHIG00000018143	PARN	100	74.688	Capra_hircus
ENSXETG00000010994	parn	89	54.167	ENSCAPG00000007984	PARN	78	54.167	Cavia_aperea
ENSXETG00000010994	parn	100	82.129	ENSCPOG00000002263	PARN	100	73.281	Cavia_porcellus
ENSXETG00000010994	parn	100	83.080	ENSCCAG00000030367	PARN	100	81.967	Cebus_capucinus
ENSXETG00000010994	parn	100	82.700	ENSCATG00000041368	PARN	100	81.967	Cercocebus_atys
ENSXETG00000010994	parn	100	82.319	ENSCLAG00000015406	PARN	99	73.396	Chinchilla_lanigera
ENSXETG00000010994	parn	100	83.080	ENSCSAG00000008142	PARN	100	74.571	Chlorocebus_sabaeus
ENSXETG00000010994	parn	99	64.162	ENSCHOG00000007014	PARN	100	59.271	Choloepus_hoffmanni
ENSXETG00000010994	parn	88	83.871	ENSCPBG00000006609	PARN	97	77.128	Chrysemys_picta_bellii
ENSXETG00000010994	parn	97	43.667	ENSCING00000010142	-	99	43.667	Ciona_intestinalis
ENSXETG00000010994	parn	100	70.950	ENSCANG00000028849	-	100	81.967	Colobus_angolensis_palliatus
ENSXETG00000010994	parn	100	79.886	ENSCGRG00001012096	Parn	100	71.495	Cricetulus_griseus_chok1gshd
ENSXETG00000010994	parn	100	79.886	ENSCGRG00000004939	Parn	100	71.495	Cricetulus_griseus_crigri
ENSXETG00000010994	parn	100	75.141	ENSCSEG00000002064	parn	100	64.091	Cynoglossus_semilaevis
ENSXETG00000010994	parn	100	74.906	ENSCVAG00000014848	parn	83	70.017	Cyprinodon_variegatus
ENSXETG00000010994	parn	100	72.000	ENSDARG00000102634	parn	100	71.818	Danio_rerio
ENSXETG00000010994	parn	100	82.700	ENSDNOG00000000833	PARN	98	80.466	Dasypus_novemcinctus
ENSXETG00000010994	parn	80	79.468	ENSETEG00000014828	-	69	79.468	Echinops_telfairi
ENSXETG00000010994	parn	55	30.201	ENSETEG00000007587	PNLDC1	54	30.201	Echinops_telfairi
ENSXETG00000010994	parn	100	82.510	ENSEASG00005011400	PARN	100	74.375	Equus_asinus_asinus
ENSXETG00000010994	parn	100	82.129	ENSECAG00000017792	PARN	100	74.062	Equus_caballus
ENSXETG00000010994	parn	72	85.714	ENSEEUG00000010370	PARN	86	66.368	Erinaceus_europaeus
ENSXETG00000010994	parn	99	76.336	ENSELUG00000013139	parn	75	71.993	Esox_lucius
ENSXETG00000010994	parn	100	82.890	ENSFCAG00000044961	PARN	100	80.328	Felis_catus
ENSXETG00000010994	parn	98	83.977	ENSFALG00000003911	PARN	98	77.021	Ficedula_albicollis
ENSXETG00000010994	parn	100	81.559	ENSFDAG00000009234	PARN	100	73.083	Fukomys_damarensis
ENSXETG00000010994	parn	100	69.245	ENSFHEG00000013738	parn	92	81.356	Fundulus_heteroclitus
ENSXETG00000010994	parn	100	74.528	ENSGMOG00000003231	parn	97	74.528	Gadus_morhua
ENSXETG00000010994	parn	99	83.810	ENSGALG00000003091	PARN	100	76.609	Gallus_gallus
ENSXETG00000010994	parn	99	75.191	ENSGAFG00000011061	parn	83	69.558	Gambusia_affinis
ENSXETG00000010994	parn	100	74.717	ENSGACG00000019501	parn	100	66.459	Gasterosteus_aculeatus
ENSXETG00000010994	parn	100	82.890	ENSGGOG00000025224	PARN	99	81.967	Gorilla_gorilla
ENSXETG00000010994	parn	100	76.894	ENSHBUG00000017906	parn	90	73.978	Haplochromis_burtoni
ENSXETG00000010994	parn	100	81.559	ENSHGLG00000010886	PARN	100	73.125	Heterocephalus_glaber_female
ENSXETG00000010994	parn	100	81.559	ENSHGLG00100014659	PARN	100	73.125	Heterocephalus_glaber_male
ENSXETG00000010994	parn	99	71.863	ENSHCOG00000008683	parn	91	71.536	Hippocampus_comes
ENSXETG00000010994	parn	100	65.524	ENSIPUG00000012401	parn	99	56.146	Ictalurus_punctatus
ENSXETG00000010994	parn	100	81.559	ENSSTOG00000007519	PARN	100	73.742	Ictidomys_tridecemlineatus
ENSXETG00000010994	parn	100	80.608	ENSJJAG00000023049	Parn	100	71.944	Jaculus_jaculus
ENSXETG00000010994	parn	100	75.849	ENSKMAG00000009462	parn	83	71.111	Kryptolebias_marmoratus
ENSXETG00000010994	parn	100	75.660	ENSLBEG00000009167	parn	89	70.377	Labrus_bergylta
ENSXETG00000010994	parn	95	75.348	ENSLACG00000004207	PARN	100	73.995	Latimeria_chalumnae
ENSXETG00000010994	parn	100	80.228	ENSLOCG00000000715	parn	99	72.408	Lepisosteus_oculatus
ENSXETG00000010994	parn	100	83.080	ENSLAFG00000015036	PARN	100	74.375	Loxodonta_africana
ENSXETG00000010994	parn	58	31.068	ENSLAFG00000030189	PNLDC1	89	30.303	Loxodonta_africana
ENSXETG00000010994	parn	100	79.278	ENSMFAG00000044852	PARN	100	81.967	Macaca_fascicularis
ENSXETG00000010994	parn	100	83.080	ENSMMUG00000018849	PARN	100	81.967	Macaca_mulatta
ENSXETG00000010994	parn	100	83.080	ENSMNEG00000045108	PARN	100	81.967	Macaca_nemestrina
ENSXETG00000010994	parn	100	82.890	ENSMLEG00000031743	PARN	100	81.967	Mandrillus_leucophaeus
ENSXETG00000010994	parn	100	76.604	ENSMAMG00000006939	parn	82	72.117	Mastacembelus_armatus
ENSXETG00000010994	parn	100	76.894	ENSMZEG00005013590	parn	90	73.606	Maylandia_zebra
ENSXETG00000010994	parn	98	82.012	ENSMGAG00000001004	PARN	99	75.279	Meleagris_gallopavo
ENSXETG00000010994	parn	100	73.645	ENSMAUG00000008025	Parn	100	66.615	Mesocricetus_auratus
ENSXETG00000010994	parn	100	83.270	ENSMICG00000016053	PARN	100	80.328	Microcebus_murinus
ENSXETG00000010994	parn	94	79.352	ENSMOCG00000022211	Parn	100	79.352	Microtus_ochrogaster
ENSXETG00000010994	parn	100	73.913	ENSMMOG00000011333	parn	100	64.263	Mola_mola
ENSXETG00000010994	parn	94	84.073	ENSMODG00000004915	PARN	99	84.073	Monodelphis_domestica
ENSXETG00000010994	parn	100	75.706	ENSMALG00000019426	parn	91	75.419	Monopterus_albus
ENSXETG00000010994	parn	99	79.619	MGP_CAROLIEiJ_G0020466	Parn	100	71.607	Mus_caroli
ENSXETG00000010994	parn	100	79.278	ENSMUSG00000022685	Parn	100	79.268	Mus_musculus
ENSXETG00000010994	parn	62	30.606	ENSMUSG00000073460	Pnldc1	97	30.606	Mus_musculus
ENSXETG00000010994	parn	100	79.468	MGP_PahariEiJ_G0016172	Parn	100	71.406	Mus_pahari
ENSXETG00000010994	parn	100	79.848	MGP_SPRETEiJ_G0021361	Parn	100	71.451	Mus_spretus
ENSXETG00000010994	parn	100	83.080	ENSMPUG00000014464	PARN	100	75.000	Mustela_putorius_furo
ENSXETG00000010994	parn	94	81.781	ENSMLUG00000005414	PARN	100	81.781	Myotis_lucifugus
ENSXETG00000010994	parn	100	74.242	ENSNBRG00000006805	parn	90	74.242	Neolamprologus_brichardi
ENSXETG00000010994	parn	100	82.890	ENSNLEG00000010241	PARN	100	81.967	Nomascus_leucogenys
ENSXETG00000010994	parn	99	59.538	ENSMEUG00000008178	-	100	54.675	Notamacropus_eugenii
ENSXETG00000010994	parn	99	77.649	ENSOPRG00000012187	PARN	100	69.731	Ochotona_princeps
ENSXETG00000010994	parn	100	74.291	ENSODEG00000001617	PARN	100	66.874	Octodon_degus
ENSXETG00000010994	parn	100	77.083	ENSONIG00000000151	parn	100	65.158	Oreochromis_niloticus
ENSXETG00000010994	parn	51	87.594	ENSOANG00000020155	-	97	74.607	Ornithorhynchus_anatinus
ENSXETG00000010994	parn	99	81.958	ENSOCUG00000000322	PARN	99	75.000	Oryctolagus_cuniculus
ENSXETG00000010994	parn	100	73.585	ENSORLG00020010313	parn	100	61.974	Oryzias_latipes_hni
ENSXETG00000010994	parn	100	73.585	ENSORLG00015000300	parn	100	61.974	Oryzias_latipes_hsok
ENSXETG00000010994	parn	100	73.962	ENSOMEG00000019555	parn	97	65.909	Oryzias_melastigma
ENSXETG00000010994	parn	94	79.798	ENSOGAG00000014626	PARN	100	79.798	Otolemur_garnettii
ENSXETG00000010994	parn	94	82.794	ENSOARG00000007574	PARN	100	82.794	Ovis_aries
ENSXETG00000010994	parn	100	82.890	ENSPPAG00000031438	PARN	100	81.967	Pan_paniscus
ENSXETG00000010994	parn	100	82.890	ENSPPRG00000018583	PARN	100	80.328	Panthera_pardus
ENSXETG00000010994	parn	100	82.890	ENSPTIG00000012135	PARN	100	80.328	Panthera_tigris_altaica
ENSXETG00000010994	parn	100	82.510	ENSPTRG00000007792	PARN	100	81.967	Pan_troglodytes
ENSXETG00000010994	parn	100	79.848	ENSPANG00000020099	PARN	100	81.967	Papio_anubis
ENSXETG00000010994	parn	100	77.905	ENSPKIG00000022807	parn	97	66.508	Paramormyrops_kingsleyae
ENSXETG00000010994	parn	100	84.221	ENSPSIG00000014804	PARN	100	76.083	Pelodiscus_sinensis
ENSXETG00000010994	parn	98	73.828	ENSPMGG00000014431	parn	74	73.258	Periophthalmus_magnuspinnatus
ENSXETG00000010994	parn	100	78.095	ENSPEMG00000018439	Parn	100	70.110	Peromyscus_maniculatus_bairdii
ENSXETG00000010994	parn	98	66.538	ENSPMAG00000003956	parn	99	66.538	Petromyzon_marinus
ENSXETG00000010994	parn	80	76.581	ENSPCIG00000001259	PARN	91	88.136	Phascolarctos_cinereus
ENSXETG00000010994	parn	100	74.906	ENSPFOG00000012823	parn	78	74.906	Poecilia_formosa
ENSXETG00000010994	parn	100	74.906	ENSPLAG00000006395	parn	78	74.906	Poecilia_latipinna
ENSXETG00000010994	parn	100	74.717	ENSPMEG00000007711	parn	78	74.717	Poecilia_mexicana
ENSXETG00000010994	parn	100	74.717	ENSPREG00000000147	parn	78	74.717	Poecilia_reticulata
ENSXETG00000010994	parn	100	82.197	ENSPPYG00000007123	PARN	100	73.717	Pongo_abelii
ENSXETG00000010994	parn	94	72.617	ENSPCAG00000001741	PARN	100	65.950	Procavia_capensis
ENSXETG00000010994	parn	100	80.989	ENSPCOG00000019292	PARN	100	80.328	Propithecus_coquereli
ENSXETG00000010994	parn	99	79.383	ENSPVAG00000002547	PARN	100	71.791	Pteropus_vampyrus
ENSXETG00000010994	parn	100	76.894	ENSPNYG00000006835	parn	90	71.375	Pundamilia_nyererei
ENSXETG00000010994	parn	91	75.157	ENSPNAG00000018905	parn	85	70.301	Pygocentrus_nattereri
ENSXETG00000010994	parn	100	79.658	ENSRNOG00000002912	Parn	98	73.737	Rattus_norvegicus
ENSXETG00000010994	parn	62	30.606	ENSRNOG00000023140	Pnldc1	89	30.606	Rattus_norvegicus
ENSXETG00000010994	parn	52	69.670	ENSRBIG00000018726	PARN	100	69.970	Rhinopithecus_bieti
ENSXETG00000010994	parn	52	69.670	ENSRROG00000011162	-	100	69.970	Rhinopithecus_roxellana
ENSXETG00000010994	parn	100	81.179	ENSSBOG00000034726	PARN	100	81.967	Saimiri_boliviensis_boliviensis
ENSXETG00000010994	parn	79	82.536	ENSSHAG00000008493	PARN	94	82.536	Sarcophilus_harrisii
ENSXETG00000010994	parn	100	78.476	ENSSFOG00015014165	parn	94	71.453	Scleropages_formosus
ENSXETG00000010994	parn	100	74.528	ENSSMAG00000000685	parn	87	69.429	Scophthalmus_maximus
ENSXETG00000010994	parn	100	75.940	ENSSDUG00000014555	parn	83	71.331	Seriola_dumerili
ENSXETG00000010994	parn	82	82.258	ENSSARG00000014339	PARN	100	67.010	Sorex_araneus
ENSXETG00000010994	parn	99	84.762	ENSSPUG00000007719	PARN	100	77.812	Sphenodon_punctatus
ENSXETG00000010994	parn	100	77.083	ENSSPAG00000007095	parn	100	63.736	Stegastes_partitus
ENSXETG00000010994	parn	100	83.080	ENSSSCG00000007878	PARN	89	74.688	Sus_scrofa
ENSXETG00000010994	parn	67	31.373	ENSTGUG00000011418	PNLDC1	68	31.373	Taeniopygia_guttata
ENSXETG00000010994	parn	99	83.654	ENSTGUG00000004971	PARN	99	76.972	Taeniopygia_guttata
ENSXETG00000010994	parn	98	79.183	ENSTNIG00000008252	parn	100	67.638	Tetraodon_nigroviridis
ENSXETG00000010994	parn	89	68.737	ENSTBEG00000010407	PARN	100	62.867	Tupaia_belangeri
ENSXETG00000010994	parn	92	81.481	ENSTTRG00000002843	PARN	100	70.206	Tursiops_truncatus
ENSXETG00000010994	parn	83	71.101	ENSUAMG00000008283	PARN	94	67.661	Ursus_americanus
ENSXETG00000010994	parn	100	82.510	ENSUMAG00000004527	PARN	100	74.531	Ursus_maritimus
ENSXETG00000010994	parn	99	80.925	ENSVPAG00000008968	PARN	99	74.225	Vicugna_pacos
ENSXETG00000010994	parn	100	82.700	ENSVVUG00000019509	PARN	100	73.906	Vulpes_vulpes
ENSXETG00000010994	parn	100	70.810	ENSXCOG00000015990	parn	96	66.269	Xiphophorus_couchianus
ENSXETG00000010994	parn	100	74.528	ENSXMAG00000014783	parn	83	69.625	Xiphophorus_maculatus