EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000011038 (Gene tree)
Gene ID: -
Gene Symbol: sf3b4
Alias: -
Full Name: Xenopus tropicalis splicing factor 3b subunit 4 (sf3b4)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 7062 bases
Position: chrGL173012.1:669083-676144
Accession: NM_203785
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000024144	RRM_1	PF00076.22	1.7e-39	1	2
ENSXETP00000024144	RRM_1	PF00076.22	1.7e-39	2	2
ENSXETP00000059096	RRM_1	PF00076.22	1.8e-39	1	2
ENSXETP00000059096	RRM_1	PF00076.22	1.8e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000060696	-	1593	-	ENSXETP00000059096	388 (aa)	-	F6SDR8
ENSXETT00000024144	-	1560	-	ENSXETP00000024144	377 (aa)	-	F7BG45

Gene Model

Click here to download ENSXETG00000011038's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000011038's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000011038	sf3b4	51	37.037	ENSXETG00000022831	pabpc1l	58	39.205

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000011038	sf3b4	53	100.000	ENSG00000143368	SF3B4	89	100.000	Homo_sapiens
ENSXETG00000011038	sf3b4	53	100.000	ENSAPOG00000017647	sf3b4	76	79.605	Acanthochromis_polyacanthus
ENSXETG00000011038	sf3b4	58	94.521	ENSACIG00000018455	sf3b4	69	91.416	Amphilophus_citrinellus
ENSXETG00000011038	sf3b4	53	100.000	ENSAOCG00000019801	sf3b4	76	79.605	Amphiprion_ocellaris
ENSXETG00000011038	sf3b4	53	100.000	ENSAPEG00000010365	sf3b4	76	79.605	Amphiprion_percula
ENSXETG00000011038	sf3b4	53	100.000	ENSATEG00000012844	sf3b4	76	82.951	Anabas_testudineus
ENSXETG00000011038	sf3b4	54	100.000	ENSACAG00000010019	SF3B4	56	91.880	Anolis_carolinensis
ENSXETG00000011038	sf3b4	59	94.595	ENSACLG00000014260	sf3b4	76	79.934	Astatotilapia_calliptera
ENSXETG00000011038	sf3b4	54	100.000	ENSAMXG00000008282	sf3b4	55	95.475	Astyanax_mexicanus
ENSXETG00000011038	sf3b4	53	100.000	ENSCAFG00000011617	SF3B4	55	92.308	Canis_familiaris
ENSXETG00000011038	sf3b4	53	100.000	ENSCAFG00020019775	SF3B4	55	92.308	Canis_lupus_dingo
ENSXETG00000011038	sf3b4	82	53.846	ENSCHIG00000006654	-	50	72.000	Capra_hircus
ENSXETG00000011038	sf3b4	57	92.655	ENSCAPG00000006451	SF3B4	51	93.923	Cavia_aperea
ENSXETG00000011038	sf3b4	53	100.000	ENSCPOG00000008267	SF3B4	55	92.308	Cavia_porcellus
ENSXETG00000011038	sf3b4	59	82.589	ENSCCAG00000019823	-	54	81.057	Cebus_capucinus
ENSXETG00000011038	sf3b4	53	100.000	ENSCLAG00000015851	SF3B4	55	92.308	Chinchilla_lanigera
ENSXETG00000011038	sf3b4	54	90.196	ENSCING00000002337	-	54	90.099	Ciona_intestinalis
ENSXETG00000011038	sf3b4	54	91.429	ENSCSAVG00000007809	-	89	89.820	Ciona_savignyi
ENSXETG00000011038	sf3b4	53	100.000	ENSCSEG00000015258	sf3b4	64	77.705	Cynoglossus_semilaevis
ENSXETG00000011038	sf3b4	58	95.909	ENSCVAG00000005536	sf3b4	78	78.878	Cyprinodon_variegatus
ENSXETG00000011038	sf3b4	54	100.000	ENSDARG00000018574	sf3b4	59	92.308	Danio_rerio
ENSXETG00000011038	sf3b4	63	78.814	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSXETG00000011038	sf3b4	56	86.190	FBgn0015818	Spx	60	86.603	Drosophila_melanogaster
ENSXETG00000011038	sf3b4	53	88.500	ENSETEG00000008963	SF3B4	51	86.977	Echinops_telfairi
ENSXETG00000011038	sf3b4	53	100.000	ENSELUG00000012876	sf3b4	55	95.536	Esox_lucius
ENSXETG00000011038	sf3b4	53	100.000	ENSFDAG00000009286	SF3B4	55	92.308	Fukomys_damarensis
ENSXETG00000011038	sf3b4	53	99.502	ENSGMOG00000002519	sf3b4	68	91.416	Gadus_morhua
ENSXETG00000011038	sf3b4	66	89.328	ENSGAFG00000010181	sf3b4	86	72.434	Gambusia_affinis
ENSXETG00000011038	sf3b4	53	100.000	ENSGACG00000003819	sf3b4	59	92.275	Gasterosteus_aculeatus
ENSXETG00000011038	sf3b4	54	88.670	ENSGGOG00000038845	-	51	89.552	Gorilla_gorilla
ENSXETG00000011038	sf3b4	59	94.595	ENSHBUG00000002028	sf3b4	76	79.934	Haplochromis_burtoni
ENSXETG00000011038	sf3b4	53	100.000	ENSHGLG00000012360	SF3B4	53	94.690	Heterocephalus_glaber_female
ENSXETG00000011038	sf3b4	53	100.000	ENSHGLG00100008533	SF3B4	51	97.674	Heterocephalus_glaber_male
ENSXETG00000011038	sf3b4	54	99.505	ENSHCOG00000003014	sf3b4	75	78.947	Hippocampus_comes
ENSXETG00000011038	sf3b4	53	100.000	ENSIPUG00000012242	Sf3b4	77	82.026	Ictalurus_punctatus
ENSXETG00000011038	sf3b4	53	70.833	ENSJJAG00000022500	Sf3b4	56	68.056	Jaculus_jaculus
ENSXETG00000011038	sf3b4	58	94.118	ENSKMAG00000008154	sf3b4	77	78.618	Kryptolebias_marmoratus
ENSXETG00000011038	sf3b4	58	94.118	ENSLBEG00000026818	sf3b4	76	77.888	Labrus_bergylta
ENSXETG00000011038	sf3b4	53	100.000	ENSLOCG00000009048	sf3b4	52	95.928	Lepisosteus_oculatus
ENSXETG00000011038	sf3b4	94	57.520	ENSMFAG00000039067	-	60	76.786	Macaca_fascicularis
ENSXETG00000011038	sf3b4	94	57.256	ENSMNEG00000031526	-	60	76.339	Macaca_nemestrina
ENSXETG00000011038	sf3b4	58	94.118	ENSMAMG00000014692	sf3b4	96	71.279	Mastacembelus_armatus
ENSXETG00000011038	sf3b4	59	94.595	ENSMZEG00005026741	sf3b4	76	79.934	Maylandia_zebra
ENSXETG00000011038	sf3b4	54	98.030	ENSMOCG00000014155	-	56	92.478	Microtus_ochrogaster
ENSXETG00000011038	sf3b4	54	100.000	ENSMMOG00000018032	sf3b4	59	93.133	Mola_mola
ENSXETG00000011038	sf3b4	54	100.000	ENSMALG00000006174	sf3b4	76	80.984	Monopterus_albus
ENSXETG00000011038	sf3b4	53	100.000	ENSNGAG00000016337	Sf3b4	55	92.308	Nannospalax_galili
ENSXETG00000011038	sf3b4	59	94.144	ENSNBRG00000013865	sf3b4	76	80.263	Neolamprologus_brichardi
ENSXETG00000011038	sf3b4	94	64.062	ENSNLEG00000000537	-	59	83.691	Nomascus_leucogenys
ENSXETG00000011038	sf3b4	87	62.178	ENSODEG00000008916	-	52	79.793	Octodon_degus
ENSXETG00000011038	sf3b4	59	94.595	ENSONIG00000002730	sf3b4	76	79.605	Oreochromis_niloticus
ENSXETG00000011038	sf3b4	80	75.161	ENSORLG00000003062	sf3b4	95	68.421	Oryzias_latipes
ENSXETG00000011038	sf3b4	57	96.313	ENSORLG00020000687	sf3b4	95	68.421	Oryzias_latipes_hni
ENSXETG00000011038	sf3b4	57	96.313	ENSORLG00015010989	sf3b4	95	68.684	Oryzias_latipes_hsok
ENSXETG00000011038	sf3b4	58	94.570	ENSOMEG00000013694	sf3b4	76	78.808	Oryzias_melastigma
ENSXETG00000011038	sf3b4	75	72.727	ENSPPAG00000030024	-	57	83.691	Pan_paniscus
ENSXETG00000011038	sf3b4	75	72.945	ENSPTRG00000049727	-	58	83.691	Pan_troglodytes
ENSXETG00000011038	sf3b4	60	94.667	ENSPKIG00000020669	sf3b4	81	82.026	Paramormyrops_kingsleyae
ENSXETG00000011038	sf3b4	58	94.118	ENSPFOG00000005754	sf3b4	77	77.961	Poecilia_formosa
ENSXETG00000011038	sf3b4	58	94.118	ENSPLAG00000001401	sf3b4	84	77.961	Poecilia_latipinna
ENSXETG00000011038	sf3b4	81	77.564	ENSPREG00000011076	sf3b4	50	100.000	Poecilia_reticulata
ENSXETG00000011038	sf3b4	59	94.595	ENSPNYG00000012700	sf3b4	76	79.934	Pundamilia_nyererei
ENSXETG00000011038	sf3b4	54	100.000	ENSPNAG00000000686	sf3b4	92	68.633	Pygocentrus_nattereri
ENSXETG00000011038	sf3b4	93	58.311	ENSRROG00000028213	-	58	72.247	Rhinopithecus_roxellana
ENSXETG00000011038	sf3b4	58	73.756	ENSSBOG00000025174	-	51	73.276	Saimiri_boliviensis_boliviensis
ENSXETG00000011038	sf3b4	53	100.000	ENSSFOG00015008864	sf3b4	75	82.680	Scleropages_formosus
ENSXETG00000011038	sf3b4	53	100.000	ENSSMAG00000006837	sf3b4	76	77.961	Scophthalmus_maximus
ENSXETG00000011038	sf3b4	53	100.000	ENSSDUG00000012064	sf3b4	76	82.295	Seriola_dumerili
ENSXETG00000011038	sf3b4	53	100.000	ENSSLDG00000014226	sf3b4	76	82.295	Seriola_lalandi_dorsalis
ENSXETG00000011038	sf3b4	54	100.000	ENSSPUG00000001028	SF3B4	55	96.380	Sphenodon_punctatus
ENSXETG00000011038	sf3b4	53	100.000	ENSSPAG00000019219	sf3b4	76	82.951	Stegastes_partitus
ENSXETG00000011038	sf3b4	58	61.991	ENSSSCG00000039440	-	56	59.914	Sus_scrofa
ENSXETG00000011038	sf3b4	53	100.000	ENSSSCG00000006665	-	55	92.308	Sus_scrofa
ENSXETG00000011038	sf3b4	64	90.000	ENSTGUG00000004470	SF3B4	80	100.000	Taeniopygia_guttata
ENSXETG00000011038	sf3b4	55	100.000	ENSTRUG00000004516	sf3b4	76	78.878	Takifugu_rubripes
ENSXETG00000011038	sf3b4	53	100.000	ENSTNIG00000009156	sf3b4	74	78.498	Tetraodon_nigroviridis
ENSXETG00000011038	sf3b4	53	100.000	ENSVVUG00000007732	-	60	92.704	Vulpes_vulpes
ENSXETG00000011038	sf3b4	53	100.000	ENSXCOG00000019895	sf3b4	78	78.289	Xiphophorus_couchianus
ENSXETG00000011038	sf3b4	53	100.000	ENSXMAG00000003772	sf3b4	78	77.961	Xiphophorus_maculatus