EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000011258 (Gene tree)
Gene ID: -
Gene Symbol: pabpn1l
Alias: -
Full Name: Xenopus tropicalis poly(A) binding protein%2C nuclear 1-like (cytoplasmic) (pabpn1l)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 6591 bases
Position: chrGL172702.1:2189366-2195956
Accession: NM_001016352
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000024583	RRM_1	PF00076.22	2.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000024583	-	1359	-	ENSXETP00000024583	218 (aa)	XP_012816539	Q28GL9

Gene Model

Click here to download ENSXETG00000011258's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000011258's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000011258	pabpn1l	90	53.883	ENSXETG00000014597	pabpn1	53	56.897

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000011258	pabpn1l	96	52.315	ENSG00000205022	PABPN1L	59	54.706	Homo_sapiens
ENSXETG00000011258	pabpn1l	64	57.554	ENSACIG00000021400	PABPN1L	73	55.245	Amphilophus_citrinellus
ENSXETG00000011258	pabpn1l	72	53.503	ENSAOCG00000019844	PABPN1L	56	55.975	Amphiprion_ocellaris
ENSXETG00000011258	pabpn1l	72	53.503	ENSAPEG00000019534	PABPN1L	56	55.975	Amphiprion_percula
ENSXETG00000011258	pabpn1l	61	60.448	ENSATEG00000011646	PABPN1L	58	55.769	Anabas_testudineus
ENSXETG00000011258	pabpn1l	61	60.150	ENSAPLG00000009174	PABPN1L	99	60.150	Anas_platyrhynchos
ENSXETG00000011258	pabpn1l	89	57.500	ENSACAG00000013250	PABPN1L	74	61.039	Anolis_carolinensis
ENSXETG00000011258	pabpn1l	96	51.852	ENSANAG00000038178	PABPN1L	59	54.706	Aotus_nancymaae
ENSXETG00000011258	pabpn1l	86	50.000	ENSACLG00000025147	PABPN1L	60	53.254	Astatotilapia_calliptera
ENSXETG00000011258	pabpn1l	71	54.545	ENSAMXG00000010873	PABPN1L	55	54.545	Astyanax_mexicanus
ENSXETG00000011258	pabpn1l	86	45.312	ENSBTAG00000023752	-	58	45.402	Bos_taurus
ENSXETG00000011258	pabpn1l	51	67.857	ENSBTAG00000006727	-	57	72.340	Bos_taurus
ENSXETG00000011258	pabpn1l	96	51.887	ENSCJAG00000045284	PABPN1L	57	55.280	Callithrix_jacchus
ENSXETG00000011258	pabpn1l	92	45.972	ENSCHIG00000013987	PABPN1L	60	46.667	Capra_hircus
ENSXETG00000011258	pabpn1l	73	53.125	ENSCAPG00000007240	PABPN1L	55	53.503	Cavia_aperea
ENSXETG00000011258	pabpn1l	81	49.718	ENSCPOG00000025951	PABPN1L	55	53.459	Cavia_porcellus
ENSXETG00000011258	pabpn1l	96	50.463	ENSCCAG00000027631	PABPN1L	59	52.353	Cebus_capucinus
ENSXETG00000011258	pabpn1l	96	51.613	ENSCATG00000031060	PABPN1L	60	53.529	Cercocebus_atys
ENSXETG00000011258	pabpn1l	75	52.761	ENSCLAG00000000704	PABPN1L	55	51.923	Chinchilla_lanigera
ENSXETG00000011258	pabpn1l	96	48.729	ENSCSAG00000002881	PABPN1L	62	50.265	Chlorocebus_sabaeus
ENSXETG00000011258	pabpn1l	96	51.584	ENSCANG00000039336	PABPN1L	56	55.152	Colobus_angolensis_palliatus
ENSXETG00000011258	pabpn1l	89	50.732	ENSCGRG00001013211	Pabpn1l	54	53.459	Cricetulus_griseus_chok1gshd
ENSXETG00000011258	pabpn1l	89	50.732	ENSCGRG00000015868	Pabpn1l	54	53.459	Cricetulus_griseus_crigri
ENSXETG00000011258	pabpn1l	82	51.934	ENSCSEG00000001142	pabpn1l	64	53.039	Cynoglossus_semilaevis
ENSXETG00000011258	pabpn1l	72	54.140	ENSCVAG00000015547	PABPN1L	56	55.346	Cyprinodon_variegatus
ENSXETG00000011258	pabpn1l	96	50.943	ENSDNOG00000034677	PABPN1L	61	53.801	Dasypus_novemcinctus
ENSXETG00000011258	pabpn1l	92	50.952	ENSEASG00005000777	PABPN1L	58	52.121	Equus_asinus_asinus
ENSXETG00000011258	pabpn1l	96	49.315	ENSECAG00000000378	PABPN1L	58	51.515	Equus_caballus
ENSXETG00000011258	pabpn1l	77	55.090	ENSELUG00000018385	PABPN1L	60	55.090	Esox_lucius
ENSXETG00000011258	pabpn1l	79	54.802	ENSFCAG00000010465	PABPN1L	55	54.375	Felis_catus
ENSXETG00000011258	pabpn1l	97	55.708	ENSFALG00000003319	PABPN1L	62	60.123	Ficedula_albicollis
ENSXETG00000011258	pabpn1l	88	47.917	ENSFDAG00000021067	PABPN1L	62	46.667	Fukomys_damarensis
ENSXETG00000011258	pabpn1l	77	52.023	ENSFHEG00000018295	PABPN1L	60	52.663	Fundulus_heteroclitus
ENSXETG00000011258	pabpn1l	78	52.663	ENSGMOG00000001475	PABPN1L	61	54.386	Gadus_morhua
ENSXETG00000011258	pabpn1l	83	57.672	ENSGALG00000006242	PABPN1L	74	60.839	Gallus_gallus
ENSXETG00000011258	pabpn1l	72	54.140	ENSGAFG00000012565	PABPN1L	56	55.346	Gambusia_affinis
ENSXETG00000011258	pabpn1l	72	55.696	ENSGACG00000015428	PABPN1L	57	56.250	Gasterosteus_aculeatus
ENSXETG00000011258	pabpn1l	96	51.598	ENSGGOG00000012670	PABPN1L	60	53.143	Gorilla_gorilla
ENSXETG00000011258	pabpn1l	86	50.532	ENSHBUG00000002388	PABPN1L	60	53.254	Haplochromis_burtoni
ENSXETG00000011258	pabpn1l	92	46.602	ENSHGLG00000014207	PABPN1L	58	48.718	Heterocephalus_glaber_female
ENSXETG00000011258	pabpn1l	92	46.602	ENSHGLG00100005230	PABPN1L	58	48.718	Heterocephalus_glaber_male
ENSXETG00000011258	pabpn1l	77	51.744	ENSHCOG00000004151	PABPN1L	60	55.233	Hippocampus_comes
ENSXETG00000011258	pabpn1l	54	55.474	ENSIPUG00000023583	PABPN1L	76	52.795	Ictalurus_punctatus
ENSXETG00000011258	pabpn1l	89	49.505	ENSSTOG00000020814	PABPN1L	59	50.575	Ictidomys_tridecemlineatus
ENSXETG00000011258	pabpn1l	96	49.309	ENSJJAG00000006433	Pabpn1l	56	53.704	Jaculus_jaculus
ENSXETG00000011258	pabpn1l	77	51.497	ENSLBEG00000011647	PABPN1L	58	53.846	Labrus_bergylta
ENSXETG00000011258	pabpn1l	89	50.739	ENSLAFG00000025902	-	58	54.545	Loxodonta_africana
ENSXETG00000011258	pabpn1l	96	50.691	ENSMFAG00000002924	PABPN1L	60	51.977	Macaca_fascicularis
ENSXETG00000011258	pabpn1l	96	51.818	ENSMMUG00000012438	PABPN1L	59	52.542	Macaca_mulatta
ENSXETG00000011258	pabpn1l	96	50.691	ENSMNEG00000044808	PABPN1L	60	51.977	Macaca_nemestrina
ENSXETG00000011258	pabpn1l	96	50.685	ENSMLEG00000032667	PABPN1L	60	54.023	Mandrillus_leucophaeus
ENSXETG00000011258	pabpn1l	86	50.000	ENSMZEG00005002186	PABPN1L	60	53.254	Maylandia_zebra
ENSXETG00000011258	pabpn1l	89	47.549	ENSMAUG00000014032	Pabpn1l	56	51.572	Mesocricetus_auratus
ENSXETG00000011258	pabpn1l	92	51.923	ENSMICG00000028179	PABPN1L	56	52.174	Microcebus_murinus
ENSXETG00000011258	pabpn1l	89	50.251	ENSMOCG00000007955	Pabpn1l	55	53.247	Microtus_ochrogaster
ENSXETG00000011258	pabpn1l	59	56.250	ENSMMOG00000017714	PABPN1L	55	56.250	Mola_mola
ENSXETG00000011258	pabpn1l	95	50.917	ENSMODG00000003873	-	61	53.488	Monodelphis_domestica
ENSXETG00000011258	pabpn1l	75	53.988	ENSMALG00000016926	PABPN1L	56	55.975	Monopterus_albus
ENSXETG00000011258	pabpn1l	89	48.500	MGP_PahariEiJ_G0023268	Pabpn1l	54	51.948	Mus_pahari
ENSXETG00000011258	pabpn1l	86	38.537	ENSMLUG00000003228	PABPN1L	53	42.949	Myotis_lucifugus
ENSXETG00000011258	pabpn1l	96	48.372	ENSNGAG00000023992	Pabpn1l	60	50.588	Nannospalax_galili
ENSXETG00000011258	pabpn1l	64	57.554	ENSNBRG00000017078	PABPN1L	60	54.839	Neolamprologus_brichardi
ENSXETG00000011258	pabpn1l	92	48.357	ENSOPRG00000005597	PABPN1L	57	51.205	Ochotona_princeps
ENSXETG00000011258	pabpn1l	82	50.000	ENSODEG00000004649	PABPN1L	53	50.968	Octodon_degus
ENSXETG00000011258	pabpn1l	87	52.821	ENSOANG00000013901	PABPN1L	54	58.442	Ornithorhynchus_anatinus
ENSXETG00000011258	pabpn1l	86	53.158	ENSORLG00000026560	PABPN1L	56	54.717	Oryzias_latipes
ENSXETG00000011258	pabpn1l	86	53.125	ENSORLG00020015068	PABPN1L	56	54.717	Oryzias_latipes_hni
ENSXETG00000011258	pabpn1l	86	53.158	ENSORLG00015000397	PABPN1L	56	54.717	Oryzias_latipes_hsok
ENSXETG00000011258	pabpn1l	96	49.550	ENSOGAG00000000433	PABPN1L	59	52.273	Otolemur_garnettii
ENSXETG00000011258	pabpn1l	78	54.598	ENSOARG00000013682	PABPN1L	52	55.346	Ovis_aries
ENSXETG00000011258	pabpn1l	96	52.315	ENSPPAG00000028866	PABPN1L	59	54.706	Pan_paniscus
ENSXETG00000011258	pabpn1l	86	51.832	ENSPPRG00000015106	PABPN1L	60	51.724	Panthera_pardus
ENSXETG00000011258	pabpn1l	86	51.872	ENSPTIG00000015606	PABPN1L	62	51.765	Panthera_tigris_altaica
ENSXETG00000011258	pabpn1l	96	52.315	ENSPTRG00000031120	PABPN1L	59	54.706	Pan_troglodytes
ENSXETG00000011258	pabpn1l	96	50.230	ENSPANG00000026039	PABPN1L	60	51.977	Papio_anubis
ENSXETG00000011258	pabpn1l	79	62.428	ENSPSIG00000003404	PABPN1L	76	63.871	Pelodiscus_sinensis
ENSXETG00000011258	pabpn1l	59	63.077	ENSPMGG00000013927	PABPN1L	59	68.000	Periophthalmus_magnuspinnatus
ENSXETG00000011258	pabpn1l	96	48.148	ENSPEMG00000016624	Pabpn1l	61	51.176	Peromyscus_maniculatus_bairdii
ENSXETG00000011258	pabpn1l	61	60.714	ENSPCIG00000007038	-	65	71.277	Phascolarctos_cinereus
ENSXETG00000011258	pabpn1l	72	54.140	ENSPFOG00000007001	PABPN1L	73	47.120	Poecilia_formosa
ENSXETG00000011258	pabpn1l	72	54.140	ENSPLAG00000018431	PABPN1L	56	55.346	Poecilia_latipinna
ENSXETG00000011258	pabpn1l	72	54.140	ENSPMEG00000009108	PABPN1L	56	55.346	Poecilia_mexicana
ENSXETG00000011258	pabpn1l	96	50.228	ENSPPYG00000007655	PABPN1L	59	53.757	Pongo_abelii
ENSXETG00000011258	pabpn1l	95	51.131	ENSPCOG00000024077	PABPN1L	59	52.874	Propithecus_coquereli
ENSXETG00000011258	pabpn1l	96	48.416	ENSPVAG00000002716	PABPN1L	59	50.000	Pteropus_vampyrus
ENSXETG00000011258	pabpn1l	86	50.000	ENSPNYG00000004803	PABPN1L	60	53.254	Pundamilia_nyererei
ENSXETG00000011258	pabpn1l	96	50.000	ENSRNOG00000029558	Pabpn1l	55	55.844	Rattus_norvegicus
ENSXETG00000011258	pabpn1l	96	51.584	ENSRBIG00000030740	PABPN1L	60	53.448	Rhinopithecus_bieti
ENSXETG00000011258	pabpn1l	95	50.463	ENSRROG00000035483	-	60	52.353	Rhinopithecus_roxellana
ENSXETG00000011258	pabpn1l	96	51.584	ENSRROG00000032240	-	60	53.448	Rhinopithecus_roxellana
ENSXETG00000011258	pabpn1l	96	52.778	ENSSBOG00000018410	PABPN1L	59	55.294	Saimiri_boliviensis_boliviensis
ENSXETG00000011258	pabpn1l	91	52.427	ENSSHAG00000010001	-	57	55.090	Sarcophilus_harrisii
ENSXETG00000011258	pabpn1l	82	49.457	ENSSMAG00000021348	PABPN1L	63	51.630	Scophthalmus_maximus
ENSXETG00000011258	pabpn1l	72	52.229	ENSSDUG00000006986	PABPN1L	56	55.975	Seriola_dumerili
ENSXETG00000011258	pabpn1l	77	50.299	ENSSLDG00000021845	PABPN1L	60	53.846	Seriola_lalandi_dorsalis
ENSXETG00000011258	pabpn1l	83	46.154	ENSSARG00000005178	-	66	45.294	Sorex_araneus
ENSXETG00000011258	pabpn1l	88	60.302	ENSSPUG00000007031	PABPN1L	63	64.286	Sphenodon_punctatus
ENSXETG00000011258	pabpn1l	86	51.064	ENSSPAG00000017978	PABPN1L	60	53.846	Stegastes_partitus
ENSXETG00000011258	pabpn1l	96	45.755	ENSSSCG00000036367	PABPN1L	60	50.556	Sus_scrofa
ENSXETG00000011258	pabpn1l	72	52.121	ENSTRUG00000024725	PABPN1L	63	55.215	Takifugu_rubripes
ENSXETG00000011258	pabpn1l	86	53.093	ENSTTRG00000004691	PABPN1L	59	53.757	Tursiops_truncatus