EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000011483 (Gene tree)
Gene ID: -
Gene Symbol: pcbp1
Alias: -
Full Name: poly(rC) binding protein 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 17501 bases
Position: chrGL172651.1:3523823-3541323
Accession: XB-GENE-949149
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000025071	KH_1	PF00013.29	8.8e-56	1	3
ENSXETP00000025071	KH_1	PF00013.29	8.8e-56	2	3
ENSXETP00000025071	KH_1	PF00013.29	8.8e-56	3	3
ENSXETP00000025071	KH_2	PF07650.17	3.2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000025071	-	1020	-	ENSXETP00000025071	339 (aa)	-	F7E9W4

Gene Model

Click here to download ENSXETG00000011483's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000011483's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000011483	pcbp1	99	69.973	ENSXETG00000012658	pcbp3	99	69.973
ENSXETG00000011483	pcbp1	71	40.351	ENSXETG00000010244	nova1	56	40.351
ENSXETG00000011483	pcbp1	91	74.438	ENSXETG00000010491	pcbp2	74	74.438
ENSXETG00000011483	pcbp1	50	32.593	ENSXETG00000007396	igf2bp3	57	32.593
ENSXETG00000011483	pcbp1	61	39.062	ENSXETG00000013137	fubp1	51	39.062
ENSXETG00000011483	pcbp1	95	31.655	ENSXETG00000001344	fubp3	77	31.655

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000011483	pcbp1	96	89.506	ENSAPOG00000016582	-	98	86.136	Acanthochromis_polyacanthus
ENSXETG00000011483	pcbp1	98	85.285	ENSAPOG00000020003	pcbp3	87	85.285	Acanthochromis_polyacanthus
ENSXETG00000011483	pcbp1	100	90.909	ENSAMEG00000001697	-	92	90.909	Ailuropoda_melanoleuca
ENSXETG00000011483	pcbp1	96	80.692	ENSACIG00000010933	pcbp3	97	77.134	Amphilophus_citrinellus
ENSXETG00000011483	pcbp1	99	85.337	ENSACIG00000002739	-	98	85.337	Amphilophus_citrinellus
ENSXETG00000011483	pcbp1	95	89.474	ENSAOCG00000008592	-	96	89.474	Amphiprion_ocellaris
ENSXETG00000011483	pcbp1	96	89.037	ENSAOCG00000007806	-	100	89.037	Amphiprion_ocellaris
ENSXETG00000011483	pcbp1	96	83.285	ENSAPEG00000008011	pcbp3	93	83.285	Amphiprion_percula
ENSXETG00000011483	pcbp1	99	88.024	ENSAPEG00000005209	-	98	88.024	Amphiprion_percula
ENSXETG00000011483	pcbp1	95	81.214	ENSATEG00000015787	-	98	81.214	Anabas_testudineus
ENSXETG00000011483	pcbp1	99	87.425	ENSATEG00000009833	-	98	87.425	Anabas_testudineus
ENSXETG00000011483	pcbp1	97	74.734	ENSAPLG00000008951	-	80	74.734	Anas_platyrhynchos
ENSXETG00000011483	pcbp1	100	92.035	ENSAPLG00000002975	-	100	92.035	Anas_platyrhynchos
ENSXETG00000011483	pcbp1	100	86.188	ENSACAG00000004607	-	100	86.188	Anolis_carolinensis
ENSXETG00000011483	pcbp1	99	80.332	ENSACAG00000009819	-	99	80.332	Anolis_carolinensis
ENSXETG00000011483	pcbp1	96	87.597	ENSANAG00000030702	-	100	87.597	Aotus_nancymaae
ENSXETG00000011483	pcbp1	99	89.222	ENSACLG00000003801	-	98	89.222	Astatotilapia_calliptera
ENSXETG00000011483	pcbp1	96	82.997	ENSACLG00000011835	pcbp3	93	82.997	Astatotilapia_calliptera
ENSXETG00000011483	pcbp1	95	86.687	ENSAMXG00000013588	-	98	86.687	Astyanax_mexicanus
ENSXETG00000011483	pcbp1	96	83.573	ENSAMXG00000003440	pcbp3	93	83.573	Astyanax_mexicanus
ENSXETG00000011483	pcbp1	97	63.611	ENSAMXG00000001760	zgc:110045	73	63.611	Astyanax_mexicanus
ENSXETG00000011483	pcbp1	86	97.447	ENSCAFG00020019472	-	84	97.447	Canis_lupus_dingo
ENSXETG00000011483	pcbp1	100	89.971	ENSCSAG00000007440	-	91	89.971	Chlorocebus_sabaeus
ENSXETG00000011483	pcbp1	100	92.920	ENSCPBG00000012151	-	100	92.920	Chrysemys_picta_bellii
ENSXETG00000011483	pcbp1	97	94.271	ENSCPBG00000000733	-	69	94.271	Chrysemys_picta_bellii
ENSXETG00000011483	pcbp1	99	75.652	ENSCSEG00000016984	-	98	75.652	Cynoglossus_semilaevis
ENSXETG00000011483	pcbp1	95	86.068	ENSCSEG00000000822	pcbp3	97	86.068	Cynoglossus_semilaevis
ENSXETG00000011483	pcbp1	96	82.997	ENSCVAG00000014482	pcbp3	93	82.997	Cyprinodon_variegatus
ENSXETG00000011483	pcbp1	99	89.521	ENSCVAG00000005262	-	98	89.521	Cyprinodon_variegatus
ENSXETG00000011483	pcbp1	99	84.314	ENSDARG00000054378	pcbp3	98	84.314	Danio_rerio
ENSXETG00000011483	pcbp1	100	77.876	ENSETEG00000015988	-	100	77.876	Echinops_telfairi
ENSXETG00000011483	pcbp1	66	76.000	ENSEBUG00000005495	pcbp3	67	76.000	Eptatretus_burgeri
ENSXETG00000011483	pcbp1	96	70.234	ENSEBUG00000016192	pcbp3	99	70.486	Eptatretus_burgeri
ENSXETG00000011483	pcbp1	98	78.338	ENSEBUG00000007485	-	92	84.018	Eptatretus_burgeri
ENSXETG00000011483	pcbp1	95	83.815	ENSELUG00000003521	pcbp3	93	83.815	Esox_lucius
ENSXETG00000011483	pcbp1	95	89.474	ENSELUG00000001560	-	97	80.845	Esox_lucius
ENSXETG00000011483	pcbp1	97	74.468	ENSFALG00000004411	-	75	74.468	Ficedula_albicollis
ENSXETG00000011483	pcbp1	100	90.265	ENSFALG00000003949	-	100	90.265	Ficedula_albicollis
ENSXETG00000011483	pcbp1	99	87.425	ENSFHEG00000006539	-	98	87.425	Fundulus_heteroclitus
ENSXETG00000011483	pcbp1	96	86.503	ENSFHEG00000016615	pcbp3	94	86.503	Fundulus_heteroclitus
ENSXETG00000011483	pcbp1	95	69.632	ENSGMOG00000008611	-	98	69.632	Gadus_morhua
ENSXETG00000011483	pcbp1	96	79.394	ENSGMOG00000011992	pcbp3	95	77.059	Gadus_morhua
ENSXETG00000011483	pcbp1	100	84.530	ENSGALG00000004394	-	98	91.304	Gallus_gallus
ENSXETG00000011483	pcbp1	99	79.167	ENSGALG00000013155	-	99	77.904	Gallus_gallus
ENSXETG00000011483	pcbp1	97	78.917	ENSGAFG00000011430	pcbp3	95	78.917	Gambusia_affinis
ENSXETG00000011483	pcbp1	96	89.198	ENSGAFG00000010274	-	93	89.198	Gambusia_affinis
ENSXETG00000011483	pcbp1	99	89.286	ENSGACG00000002266	-	98	89.286	Gasterosteus_aculeatus
ENSXETG00000011483	pcbp1	99	76.839	ENSGACG00000014955	-	98	76.839	Gasterosteus_aculeatus
ENSXETG00000011483	pcbp1	92	84.669	ENSGAGG00000000271	-	100	84.669	Gopherus_agassizii
ENSXETG00000011483	pcbp1	73	89.231	ENSGAGG00000006956	-	78	89.231	Gopherus_agassizii
ENSXETG00000011483	pcbp1	99	89.222	ENSHBUG00000021782	-	98	89.222	Haplochromis_burtoni
ENSXETG00000011483	pcbp1	95	86.378	ENSHBUG00000010697	pcbp3	96	86.378	Haplochromis_burtoni
ENSXETG00000011483	pcbp1	99	85.329	ENSHCOG00000006067	-	98	85.329	Hippocampus_comes
ENSXETG00000011483	pcbp1	96	82.997	ENSHCOG00000017868	pcbp3	93	82.997	Hippocampus_comes
ENSXETG00000011483	pcbp1	99	87.725	ENSIPUG00000006238	pcbp3	98	87.725	Ictalurus_punctatus
ENSXETG00000011483	pcbp1	96	83.285	ENSKMAG00000003046	pcbp3	93	83.285	Kryptolebias_marmoratus
ENSXETG00000011483	pcbp1	96	88.580	ENSKMAG00000018530	-	93	88.580	Kryptolebias_marmoratus
ENSXETG00000011483	pcbp1	99	74.336	ENSLBEG00000006542	-	98	74.336	Labrus_bergylta
ENSXETG00000011483	pcbp1	98	85.801	ENSLBEG00000006201	pcbp3	96	85.801	Labrus_bergylta
ENSXETG00000011483	pcbp1	97	78.933	ENSLACG00000010386	pcbp3	75	78.933	Latimeria_chalumnae
ENSXETG00000011483	pcbp1	97	74.263	ENSLACG00000010804	zgc:110045	74	74.263	Latimeria_chalumnae
ENSXETG00000011483	pcbp1	100	90.855	ENSLOCG00000009369	pcbp3	100	90.855	Lepisosteus_oculatus
ENSXETG00000011483	pcbp1	97	78.632	ENSLOCG00000005058	zgc:110045	81	78.632	Lepisosteus_oculatus
ENSXETG00000011483	pcbp1	95	86.687	ENSMAMG00000022336	pcbp3	91	86.687	Mastacembelus_armatus
ENSXETG00000011483	pcbp1	99	86.527	ENSMAMG00000011620	-	98	86.527	Mastacembelus_armatus
ENSXETG00000011483	pcbp1	99	82.029	ENSMZEG00005014882	-	98	82.029	Maylandia_zebra
ENSXETG00000011483	pcbp1	96	80.692	ENSMZEG00005008993	pcbp3	96	80.580	Maylandia_zebra
ENSXETG00000011483	pcbp1	97	74.734	ENSMGAG00000006794	-	75	74.734	Meleagris_gallopavo
ENSXETG00000011483	pcbp1	97	80.056	ENSMGAG00000001883	-	97	80.618	Meleagris_gallopavo
ENSXETG00000011483	pcbp1	99	86.527	ENSMMOG00000005216	-	98	86.527	Mola_mola
ENSXETG00000011483	pcbp1	95	85.846	ENSMMOG00000000730	pcbp3	86	85.846	Mola_mola
ENSXETG00000011483	pcbp1	69	78.037	ENSMODG00000027884	-	93	78.037	Monodelphis_domestica
ENSXETG00000011483	pcbp1	95	81.159	ENSMALG00000000691	pcbp3	98	77.879	Monopterus_albus
ENSXETG00000011483	pcbp1	100	84.956	ENSMPUG00000001779	-	92	84.956	Mustela_putorius_furo
ENSXETG00000011483	pcbp1	99	80.516	ENSNBRG00000016714	-	100	80.516	Neolamprologus_brichardi
ENSXETG00000011483	pcbp1	96	80.403	ENSNBRG00000016409	-	93	80.403	Neolamprologus_brichardi
ENSXETG00000011483	pcbp1	96	82.857	ENSOPRG00000003431	-	100	82.857	Ochotona_princeps
ENSXETG00000011483	pcbp1	95	82.948	ENSONIG00000012122	-	96	82.948	Oreochromis_niloticus
ENSXETG00000011483	pcbp1	99	89.222	ENSONIG00000004611	-	98	89.222	Oreochromis_niloticus
ENSXETG00000011483	pcbp1	100	89.676	ENSOCUG00000002696	-	91	89.676	Oryctolagus_cuniculus
ENSXETG00000011483	pcbp1	95	89.474	ENSORLG00000000059	pcbp3	98	89.474	Oryzias_latipes
ENSXETG00000011483	pcbp1	99	89.521	ENSORLG00000022739	-	98	89.521	Oryzias_latipes
ENSXETG00000011483	pcbp1	99	89.820	ENSORLG00020006124	-	98	89.820	Oryzias_latipes_hni
ENSXETG00000011483	pcbp1	98	88.253	ENSORLG00020012671	pcbp3	97	88.253	Oryzias_latipes_hni
ENSXETG00000011483	pcbp1	98	88.253	ENSORLG00015000429	pcbp3	97	88.253	Oryzias_latipes_hsok
ENSXETG00000011483	pcbp1	98	88.218	ENSORLG00015008051	-	95	88.218	Oryzias_latipes_hsok
ENSXETG00000011483	pcbp1	96	86.129	ENSOMEG00000020811	pcbp3	99	86.129	Oryzias_melastigma
ENSXETG00000011483	pcbp1	99	89.521	ENSOMEG00000020162	-	98	89.521	Oryzias_melastigma
ENSXETG00000011483	pcbp1	100	82.973	ENSOGAG00000008044	-	100	82.973	Otolemur_garnettii
ENSXETG00000011483	pcbp1	99	88.024	ENSPKIG00000019329	pcbp3	98	88.024	Paramormyrops_kingsleyae
ENSXETG00000011483	pcbp1	73	84.375	ENSPKIG00000020913	-	83	84.375	Paramormyrops_kingsleyae
ENSXETG00000011483	pcbp1	90	76.316	ENSPSIG00000008350	-	68	76.316	Pelodiscus_sinensis
ENSXETG00000011483	pcbp1	100	82.596	ENSPSIG00000014970	-	100	83.186	Pelodiscus_sinensis
ENSXETG00000011483	pcbp1	95	83.188	ENSPMGG00000022383	pcbp3	93	83.188	Periophthalmus_magnuspinnatus
ENSXETG00000011483	pcbp1	98	71.557	ENSPMAG00000004551	pcbp3	91	71.557	Petromyzon_marinus
ENSXETG00000011483	pcbp1	84	89.637	ENSPMAG00000004637	-	100	89.637	Petromyzon_marinus
ENSXETG00000011483	pcbp1	100	85.083	ENSPCIG00000028092	-	99	92.793	Phascolarctos_cinereus
ENSXETG00000011483	pcbp1	99	87.537	ENSPLAG00000004074	-	91	87.537	Poecilia_latipinna
ENSXETG00000011483	pcbp1	97	79.603	ENSPLAG00000011449	pcbp3	87	79.603	Poecilia_latipinna
ENSXETG00000011483	pcbp1	99	84.241	ENSPMEG00000006653	-	98	84.527	Poecilia_mexicana
ENSXETG00000011483	pcbp1	95	82.759	ENSPMEG00000021239	pcbp3	93	82.759	Poecilia_mexicana
ENSXETG00000011483	pcbp1	95	84.923	ENSPREG00000015736	pcbp3	97	84.923	Poecilia_reticulata
ENSXETG00000011483	pcbp1	99	87.425	ENSPREG00000020585	-	91	96.535	Poecilia_reticulata
ENSXETG00000011483	pcbp1	99	86.826	ENSPNYG00000013205	-	98	86.826	Pundamilia_nyererei
ENSXETG00000011483	pcbp1	95	86.687	ENSPNYG00000012326	pcbp3	93	86.687	Pundamilia_nyererei
ENSXETG00000011483	pcbp1	99	89.820	ENSPNAG00000015104	pcbp3	98	89.820	Pygocentrus_nattereri
ENSXETG00000011483	pcbp1	95	87.227	ENSPNAG00000008541	-	96	87.227	Pygocentrus_nattereri
ENSXETG00000011483	pcbp1	100	90.265	ENSRNOG00000001245	Pcbp3	100	90.265	Rattus_norvegicus
ENSXETG00000011483	pcbp1	100	79.772	ENSRBIG00000028177	-	100	76.203	Rhinopithecus_bieti
ENSXETG00000011483	pcbp1	100	92.330	ENSSHAG00000007890	-	100	92.330	Sarcophilus_harrisii
ENSXETG00000011483	pcbp1	96	82.421	ENSSFOG00015014706	pcbp3	93	82.421	Scleropages_formosus
ENSXETG00000011483	pcbp1	96	89.506	ENSSFOG00015010205	pcbp3	93	89.506	Scleropages_formosus
ENSXETG00000011483	pcbp1	99	78.994	ENSSFOG00015007118	-	97	78.994	Scleropages_formosus
ENSXETG00000011483	pcbp1	95	86.997	ENSSMAG00000011929	pcbp3	95	86.997	Scophthalmus_maximus
ENSXETG00000011483	pcbp1	99	89.521	ENSSMAG00000003135	-	98	89.521	Scophthalmus_maximus
ENSXETG00000011483	pcbp1	95	80.925	ENSSDUG00000011608	pcbp3	97	80.925	Seriola_dumerili
ENSXETG00000011483	pcbp1	96	83.333	ENSSDUG00000008502	-	98	80.247	Seriola_dumerili
ENSXETG00000011483	pcbp1	95	80.925	ENSSLDG00000008518	pcbp3	97	80.925	Seriola_lalandi_dorsalis
ENSXETG00000011483	pcbp1	96	89.506	ENSSLDG00000020161	-	93	89.506	Seriola_lalandi_dorsalis
ENSXETG00000011483	pcbp1	93	78.317	ENSSPUG00000013214	-	92	86.341	Sphenodon_punctatus
ENSXETG00000011483	pcbp1	96	89.369	ENSSPAG00000004190	-	100	89.369	Stegastes_partitus
ENSXETG00000011483	pcbp1	95	72.046	ENSSPAG00000023341	-	93	70.317	Stegastes_partitus
ENSXETG00000011483	pcbp1	100	89.381	ENSTGUG00000003316	-	100	89.381	Taeniopygia_guttata
ENSXETG00000011483	pcbp1	99	85.503	ENSTGUG00000008158	-	100	85.503	Taeniopygia_guttata
ENSXETG00000011483	pcbp1	96	88.636	ENSTRUG00000006280	-	92	88.636	Takifugu_rubripes
ENSXETG00000011483	pcbp1	96	83.976	ENSTRUG00000013604	pcbp3	82	96.809	Takifugu_rubripes
ENSXETG00000011483	pcbp1	100	85.083	ENSTTRG00000015075	-	100	85.083	Tursiops_truncatus
ENSXETG00000011483	pcbp1	95	82.759	ENSXCOG00000020481	pcbp3	93	82.759	Xiphophorus_couchianus
ENSXETG00000011483	pcbp1	96	83.285	ENSXMAG00000008175	pcbp3	93	83.285	Xiphophorus_maculatus
ENSXETG00000011483	pcbp1	96	89.506	ENSXMAG00000028711	-	93	89.506	Xiphophorus_maculatus