EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000011523 (Gene tree)
Gene ID: -
Gene Symbol: rtcb
Alias: -
Full Name: Xenopus tropicalis RNA 2'%2C3'-cyclic phosphate and 5'-OH ligase (rtcb)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 7824 bases
Position: chrGL173237.1:144956-152779
Accession: NM_001030503
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000025212	RtcB	PF01139.17	1.1e-145	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000025212	-	2411	-	ENSXETP00000025212	505 (aa)	-	Q561P3

Gene Model

Click here to download ENSXETG00000011523's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000011523's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000011523	rtcb	100	94.653	ENSG00000100220	RTCB	100	94.653	Homo_sapiens
ENSXETG00000011523	rtcb	100	93.465	ENSAPOG00000006040	rtcb	100	93.465	Acanthochromis_polyacanthus
ENSXETG00000011523	rtcb	100	94.653	ENSAMEG00000016152	RTCB	100	94.653	Ailuropoda_melanoleuca
ENSXETG00000011523	rtcb	100	89.505	ENSACIG00000009083	rtcb	100	89.505	Amphilophus_citrinellus
ENSXETG00000011523	rtcb	100	93.663	ENSAOCG00000005662	rtcb	100	94.348	Amphiprion_ocellaris
ENSXETG00000011523	rtcb	96	88.501	ENSAPEG00000024653	rtcb	100	88.501	Amphiprion_percula
ENSXETG00000011523	rtcb	100	93.663	ENSAPEG00000024701	rtcb	100	93.663	Amphiprion_percula
ENSXETG00000011523	rtcb	100	94.455	ENSATEG00000000618	rtcb	100	94.455	Anabas_testudineus
ENSXETG00000011523	rtcb	100	91.715	ENSACAG00000014817	RTCB	100	91.715	Anolis_carolinensis
ENSXETG00000011523	rtcb	72	97.222	ENSANAG00000023724	-	100	59.684	Aotus_nancymaae
ENSXETG00000011523	rtcb	100	79.802	ENSANAG00000018191	-	91	79.802	Aotus_nancymaae
ENSXETG00000011523	rtcb	100	92.475	ENSACLG00000008367	rtcb	100	93.478	Astatotilapia_calliptera
ENSXETG00000011523	rtcb	100	93.663	ENSAMXG00000042320	rtcb	100	93.663	Astyanax_mexicanus
ENSXETG00000011523	rtcb	100	94.653	ENSBTAG00000011070	RTCB	100	94.653	Bos_taurus
ENSXETG00000011523	rtcb	100	72.673	WBGene00008877	rtcb-1	100	72.673	Caenorhabditis_elegans
ENSXETG00000011523	rtcb	100	94.455	ENSCJAG00000006128	RTCB	100	94.455	Callithrix_jacchus
ENSXETG00000011523	rtcb	100	94.653	ENSCAFG00000001785	RTCB	100	94.653	Canis_familiaris
ENSXETG00000011523	rtcb	100	90.693	ENSCAFG00000010789	-	100	90.693	Canis_familiaris
ENSXETG00000011523	rtcb	87	90.909	ENSCAFG00020018953	-	99	90.909	Canis_lupus_dingo
ENSXETG00000011523	rtcb	100	94.653	ENSCAFG00020004890	-	100	94.653	Canis_lupus_dingo
ENSXETG00000011523	rtcb	100	94.653	ENSCHIG00000027009	-	100	94.653	Capra_hircus
ENSXETG00000011523	rtcb	100	94.455	ENSTSYG00000012320	RTCB	100	94.455	Carlito_syrichta
ENSXETG00000011523	rtcb	94	94.549	ENSCAPG00000011647	RTCB	96	94.549	Cavia_aperea
ENSXETG00000011523	rtcb	100	94.455	ENSCCAG00000000618	RTCB	100	94.455	Cebus_capucinus
ENSXETG00000011523	rtcb	100	94.455	ENSCATG00000033424	RTCB	100	94.455	Cercocebus_atys
ENSXETG00000011523	rtcb	100	94.455	ENSCLAG00000007997	RTCB	100	94.455	Chinchilla_lanigera
ENSXETG00000011523	rtcb	100	94.257	ENSCSAG00000008351	RTCB	100	94.257	Chlorocebus_sabaeus
ENSXETG00000011523	rtcb	100	80.594	ENSCHOG00000009123	RTCB	100	80.594	Choloepus_hoffmanni
ENSXETG00000011523	rtcb	100	94.851	ENSCPBG00000023184	RTCB	100	94.851	Chrysemys_picta_bellii
ENSXETG00000011523	rtcb	100	80.792	ENSCING00000003830	-	100	80.792	Ciona_intestinalis
ENSXETG00000011523	rtcb	100	81.188	ENSCSAVG00000008124	-	100	80.638	Ciona_savignyi
ENSXETG00000011523	rtcb	100	90.693	ENSCANG00000001891	RTCB	100	90.693	Colobus_angolensis_palliatus
ENSXETG00000011523	rtcb	100	94.653	ENSCGRG00001011173	Rtcb	100	94.653	Cricetulus_griseus_chok1gshd
ENSXETG00000011523	rtcb	93	94.904	ENSCGRG00000009587	-	96	94.904	Cricetulus_griseus_crigri
ENSXETG00000011523	rtcb	100	93.069	ENSCSEG00000003986	rtcb	100	93.069	Cynoglossus_semilaevis
ENSXETG00000011523	rtcb	82	92.548	ENSCVAG00000000569	rtcb	95	92.548	Cyprinodon_variegatus
ENSXETG00000011523	rtcb	100	94.653	ENSDARG00000101047	rtcb	100	94.653	Danio_rerio
ENSXETG00000011523	rtcb	80	91.400	ENSDNOG00000012425	RTCB	99	91.400	Dasypus_novemcinctus
ENSXETG00000011523	rtcb	100	95.446	ENSDORG00000010855	Rtcb	100	95.446	Dipodomys_ordii
ENSXETG00000011523	rtcb	99	83.897	FBgn0032781	RtcB	99	83.897	Drosophila_melanogaster
ENSXETG00000011523	rtcb	100	88.911	ENSETEG00000001988	RTCB	100	88.911	Echinops_telfairi
ENSXETG00000011523	rtcb	100	84.356	ENSEBUG00000014235	rtcb	100	84.356	Eptatretus_burgeri
ENSXETG00000011523	rtcb	100	94.851	ENSEASG00005019059	RTCB	100	94.851	Equus_asinus_asinus
ENSXETG00000011523	rtcb	100	94.851	ENSECAG00000023998	RTCB	100	94.851	Equus_caballus
ENSXETG00000011523	rtcb	88	86.323	ENSEEUG00000006251	RTCB	99	86.323	Erinaceus_europaeus
ENSXETG00000011523	rtcb	100	82.042	ENSELUG00000009275	rtcb	100	82.042	Esox_lucius
ENSXETG00000011523	rtcb	100	94.653	ENSFCAG00000026480	RTCB	100	94.653	Felis_catus
ENSXETG00000011523	rtcb	100	95.446	ENSFALG00000013334	RTCB	100	95.446	Ficedula_albicollis
ENSXETG00000011523	rtcb	100	94.455	ENSFDAG00000018150	RTCB	100	94.455	Fukomys_damarensis
ENSXETG00000011523	rtcb	100	93.465	ENSFHEG00000009595	rtcb	100	93.465	Fundulus_heteroclitus
ENSXETG00000011523	rtcb	100	91.485	ENSGMOG00000018882	rtcb	100	91.485	Gadus_morhua
ENSXETG00000011523	rtcb	100	95.248	ENSGALG00000012611	RTCB	100	95.248	Gallus_gallus
ENSXETG00000011523	rtcb	100	93.069	ENSGAFG00000004198	rtcb	100	93.069	Gambusia_affinis
ENSXETG00000011523	rtcb	100	93.465	ENSGACG00000000586	rtcb	100	93.465	Gasterosteus_aculeatus
ENSXETG00000011523	rtcb	93	94.255	ENSGAGG00000019133	RTCB	98	94.255	Gopherus_agassizii
ENSXETG00000011523	rtcb	100	94.653	ENSGGOG00000011402	RTCB	100	94.653	Gorilla_gorilla
ENSXETG00000011523	rtcb	100	92.475	ENSHBUG00000020571	rtcb	100	92.475	Haplochromis_burtoni
ENSXETG00000011523	rtcb	100	94.455	ENSHGLG00000004492	RTCB	100	94.455	Heterocephalus_glaber_female
ENSXETG00000011523	rtcb	93	67.804	ENSHGLG00000001066	-	99	67.804	Heterocephalus_glaber_female
ENSXETG00000011523	rtcb	100	94.455	ENSHGLG00100008965	RTCB	100	94.455	Heterocephalus_glaber_male
ENSXETG00000011523	rtcb	100	91.321	ENSHCOG00000006450	rtcb	100	91.321	Hippocampus_comes
ENSXETG00000011523	rtcb	100	92.871	ENSIPUG00000015443	rtcb	100	92.871	Ictalurus_punctatus
ENSXETG00000011523	rtcb	100	94.653	ENSSTOG00000003878	RTCB	100	94.653	Ictidomys_tridecemlineatus
ENSXETG00000011523	rtcb	100	94.455	ENSJJAG00000010667	Rtcb	100	94.455	Jaculus_jaculus
ENSXETG00000011523	rtcb	100	93.267	ENSKMAG00000013178	rtcb	100	93.267	Kryptolebias_marmoratus
ENSXETG00000011523	rtcb	100	94.455	ENSLBEG00000010566	RTCB	100	94.455	Labrus_bergylta
ENSXETG00000011523	rtcb	100	93.267	ENSLBEG00000000214	rtcb	100	93.267	Labrus_bergylta
ENSXETG00000011523	rtcb	100	93.663	ENSLACG00000013033	RTCB	100	93.663	Latimeria_chalumnae
ENSXETG00000011523	rtcb	100	95.050	ENSLOCG00000016515	rtcb	99	95.050	Lepisosteus_oculatus
ENSXETG00000011523	rtcb	100	94.059	ENSLAFG00000002082	RTCB	100	94.059	Loxodonta_africana
ENSXETG00000011523	rtcb	100	94.257	ENSMFAG00000034419	RTCB	100	94.257	Macaca_fascicularis
ENSXETG00000011523	rtcb	100	94.257	ENSMMUG00000006720	RTCB	100	94.257	Macaca_mulatta
ENSXETG00000011523	rtcb	100	94.257	ENSMNEG00000040669	RTCB	100	94.257	Macaca_nemestrina
ENSXETG00000011523	rtcb	100	94.455	ENSMLEG00000040505	RTCB	100	94.455	Mandrillus_leucophaeus
ENSXETG00000011523	rtcb	100	94.257	ENSMAMG00000020676	rtcb	100	94.257	Mastacembelus_armatus
ENSXETG00000011523	rtcb	100	92.475	ENSMZEG00005018942	rtcb	100	92.475	Maylandia_zebra
ENSXETG00000011523	rtcb	100	94.872	ENSMGAG00000012805	RTCB	100	94.872	Meleagris_gallopavo
ENSXETG00000011523	rtcb	60	98.230	ENSMAUG00000008301	Rtcb	100	98.230	Mesocricetus_auratus
ENSXETG00000011523	rtcb	100	75.446	ENSMICG00000036677	-	100	75.446	Microcebus_murinus
ENSXETG00000011523	rtcb	100	94.455	ENSMICG00000013303	-	100	94.455	Microcebus_murinus
ENSXETG00000011523	rtcb	100	94.653	ENSMOCG00000002440	Rtcb	100	94.653	Microtus_ochrogaster
ENSXETG00000011523	rtcb	100	94.257	ENSMMOG00000005987	rtcb	100	94.257	Mola_mola
ENSXETG00000011523	rtcb	100	96.040	ENSMODG00000001414	RTCB	100	96.040	Monodelphis_domestica
ENSXETG00000011523	rtcb	100	93.861	ENSMALG00000007603	rtcb	100	93.861	Monopterus_albus
ENSXETG00000011523	rtcb	100	94.653	MGP_CAROLIEiJ_G0015689	Rtcb	100	94.653	Mus_caroli
ENSXETG00000011523	rtcb	100	94.653	ENSMUSG00000001783	Rtcb	100	94.653	Mus_musculus
ENSXETG00000011523	rtcb	100	94.653	MGP_PahariEiJ_G0031396	Rtcb	100	94.653	Mus_pahari
ENSXETG00000011523	rtcb	100	94.653	MGP_SPRETEiJ_G0016507	Rtcb	100	94.653	Mus_spretus
ENSXETG00000011523	rtcb	100	94.653	ENSMPUG00000012285	RTCB	100	94.653	Mustela_putorius_furo
ENSXETG00000011523	rtcb	100	92.110	ENSMLUG00000007803	RTCB	100	92.110	Myotis_lucifugus
ENSXETG00000011523	rtcb	72	98.667	ENSNGAG00000005093	Rtcb	100	98.667	Nannospalax_galili
ENSXETG00000011523	rtcb	100	92.673	ENSNBRG00000017202	rtcb	100	92.673	Neolamprologus_brichardi
ENSXETG00000011523	rtcb	100	94.653	ENSNLEG00000004960	RTCB	100	94.653	Nomascus_leucogenys
ENSXETG00000011523	rtcb	100	71.485	ENSMEUG00000007809	-	100	71.485	Notamacropus_eugenii
ENSXETG00000011523	rtcb	73	97.500	ENSOPRG00000003488	RTCB	79	97.500	Ochotona_princeps
ENSXETG00000011523	rtcb	100	62.970	ENSODEG00000005042	-	100	62.970	Octodon_degus
ENSXETG00000011523	rtcb	82	98.113	ENSODEG00000013033	-	100	98.113	Octodon_degus
ENSXETG00000011523	rtcb	100	93.267	ENSONIG00000007474	rtcb	100	93.267	Oreochromis_niloticus
ENSXETG00000011523	rtcb	100	95.644	ENSOANG00000005524	RTCB	100	95.644	Ornithorhynchus_anatinus
ENSXETG00000011523	rtcb	93	94.255	ENSOCUG00000008270	RTCB	96	94.255	Oryctolagus_cuniculus
ENSXETG00000011523	rtcb	100	92.871	ENSORLG00000020093	rtcb	100	92.871	Oryzias_latipes
ENSXETG00000011523	rtcb	100	92.871	ENSORLG00020003706	rtcb	100	92.871	Oryzias_latipes_hni
ENSXETG00000011523	rtcb	100	93.069	ENSORLG00015002968	rtcb	100	93.069	Oryzias_latipes_hsok
ENSXETG00000011523	rtcb	100	92.673	ENSOMEG00000021278	rtcb	100	92.673	Oryzias_melastigma
ENSXETG00000011523	rtcb	100	94.059	ENSOGAG00000001425	RTCB	100	94.059	Otolemur_garnettii
ENSXETG00000011523	rtcb	100	94.653	ENSOARG00000018008	RTCB	100	94.653	Ovis_aries
ENSXETG00000011523	rtcb	100	94.653	ENSPPAG00000028667	RTCB	100	94.653	Pan_paniscus
ENSXETG00000011523	rtcb	100	94.653	ENSPPRG00000004038	RTCB	100	94.653	Panthera_pardus
ENSXETG00000011523	rtcb	94	90.526	ENSPTIG00000020499	RTCB	97	91.579	Panthera_tigris_altaica
ENSXETG00000011523	rtcb	100	94.653	ENSPTRG00000014287	RTCB	100	94.653	Pan_troglodytes
ENSXETG00000011523	rtcb	100	94.257	ENSPANG00000016035	RTCB	100	94.257	Papio_anubis
ENSXETG00000011523	rtcb	100	93.465	ENSPKIG00000001881	rtcb	100	93.465	Paramormyrops_kingsleyae
ENSXETG00000011523	rtcb	91	95.652	ENSPSIG00000011690	RTCB	100	95.652	Pelodiscus_sinensis
ENSXETG00000011523	rtcb	100	93.861	ENSPMGG00000016672	rtcb	100	93.861	Periophthalmus_magnuspinnatus
ENSXETG00000011523	rtcb	100	94.653	ENSPEMG00000019548	Rtcb	100	94.653	Peromyscus_maniculatus_bairdii
ENSXETG00000011523	rtcb	100	90.297	ENSPMAG00000005657	rtcb	100	90.297	Petromyzon_marinus
ENSXETG00000011523	rtcb	100	95.644	ENSPCIG00000009467	RTCB	100	95.644	Phascolarctos_cinereus
ENSXETG00000011523	rtcb	100	93.465	ENSPFOG00000003058	rtcb	100	93.465	Poecilia_formosa
ENSXETG00000011523	rtcb	100	93.465	ENSPLAG00000017663	rtcb	100	93.465	Poecilia_latipinna
ENSXETG00000011523	rtcb	100	93.465	ENSPMEG00000006227	rtcb	100	93.465	Poecilia_mexicana
ENSXETG00000011523	rtcb	100	93.267	ENSPREG00000018467	rtcb	100	93.267	Poecilia_reticulata
ENSXETG00000011523	rtcb	100	94.653	ENSPPYG00000011752	RTCB	100	94.653	Pongo_abelii
ENSXETG00000011523	rtcb	93	77.754	ENSPCAG00000013641	RTCB	100	77.754	Procavia_capensis
ENSXETG00000011523	rtcb	100	94.455	ENSPCOG00000017243	RTCB	100	94.455	Propithecus_coquereli
ENSXETG00000011523	rtcb	93	93.191	ENSPVAG00000002380	RTCB	100	93.191	Pteropus_vampyrus
ENSXETG00000011523	rtcb	100	92.475	ENSPNYG00000022760	rtcb	100	92.475	Pundamilia_nyererei
ENSXETG00000011523	rtcb	100	93.267	ENSPNAG00000009209	rtcb	100	93.267	Pygocentrus_nattereri
ENSXETG00000011523	rtcb	100	94.653	ENSRNOG00000004813	Rtcb	100	94.653	Rattus_norvegicus
ENSXETG00000011523	rtcb	100	85.968	ENSRBIG00000042090	RTCB	100	85.968	Rhinopithecus_bieti
ENSXETG00000011523	rtcb	100	89.703	ENSSBOG00000020085	-	100	89.703	Saimiri_boliviensis_boliviensis
ENSXETG00000011523	rtcb	94	95.570	ENSSHAG00000016277	RTCB	100	95.570	Sarcophilus_harrisii
ENSXETG00000011523	rtcb	100	93.069	ENSSFOG00015000763	rtcb	100	93.069	Scleropages_formosus
ENSXETG00000011523	rtcb	100	93.465	ENSSFOG00015011572	RTCB	100	93.465	Scleropages_formosus
ENSXETG00000011523	rtcb	100	90.891	ENSSMAG00000005096	rtcb	100	90.891	Scophthalmus_maximus
ENSXETG00000011523	rtcb	100	93.465	ENSSDUG00000012605	rtcb	100	93.465	Seriola_dumerili
ENSXETG00000011523	rtcb	100	93.465	ENSSLDG00000019458	rtcb	100	93.465	Seriola_lalandi_dorsalis
ENSXETG00000011523	rtcb	66	100.000	ENSSARG00000004799	-	70	100.000	Sorex_araneus
ENSXETG00000011523	rtcb	100	94.653	ENSSPUG00000012814	RTCB	100	94.653	Sphenodon_punctatus
ENSXETG00000011523	rtcb	100	93.663	ENSSPAG00000004623	rtcb	100	93.663	Stegastes_partitus
ENSXETG00000011523	rtcb	100	94.653	ENSSSCG00000000158	RTCB	100	94.653	Sus_scrofa
ENSXETG00000011523	rtcb	100	95.446	ENSTGUG00000010947	RTCB	99	95.446	Taeniopygia_guttata
ENSXETG00000011523	rtcb	91	94.348	ENSTRUG00000009880	rtcb	100	94.348	Takifugu_rubripes
ENSXETG00000011523	rtcb	100	92.079	ENSTNIG00000002484	rtcb	100	92.079	Tetraodon_nigroviridis
ENSXETG00000011523	rtcb	100	82.178	ENSTBEG00000004418	RTCB	100	82.178	Tupaia_belangeri
ENSXETG00000011523	rtcb	93	94.043	ENSTTRG00000006417	RTCB	100	94.043	Tursiops_truncatus
ENSXETG00000011523	rtcb	100	94.653	ENSUAMG00000022792	RTCB	100	94.653	Ursus_americanus
ENSXETG00000011523	rtcb	100	94.653	ENSUMAG00000017225	RTCB	100	94.653	Ursus_maritimus
ENSXETG00000011523	rtcb	100	94.455	ENSVPAG00000005375	RTCB	100	94.455	Vicugna_pacos
ENSXETG00000011523	rtcb	100	94.653	ENSVVUG00000023408	RTCB	100	95.577	Vulpes_vulpes
ENSXETG00000011523	rtcb	100	93.465	ENSXMAG00000002855	rtcb	100	93.465	Xiphophorus_maculatus