EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXETG00000011534 (Gene tree)
Gene ID
-
Gene Symbol
lsm3
Alias
-
Full Name
Xenopus tropicalis LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated (lsm3)%2C mRNA.
Gene Type
protein_coding
Species
Xenopus_tropicalis
Status
putative
Strand
Minus strand
Length
6412 bases
Position
chrGL172989.1:863024-869435
Accession
NM_001172287
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXETP00000025236LSMPF01423.223.7e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXETT00000025236-669-ENSXETP00000025236102 (aa)-A9JSD0
Gene Model
Click here to download ENSXETG00000011534's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000011534's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXETG00000011534lsm38432.222ENSXETG00000002173snrpd27031.707
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXETG00000011534lsm310098.039ENSG00000170860LSM310098.039Homo_sapiens
ENSXETG00000011534lsm310095.098ENSAPOG00000018947lsm310095.098Acanthochromis_polyacanthus
ENSXETG00000011534lsm310098.039ENSAMEG00000009405LSM310098.039Ailuropoda_melanoleuca
ENSXETG00000011534lsm310094.118ENSACIG00000004574lsm37194.118Amphilophus_citrinellus
ENSXETG00000011534lsm310095.098ENSAOCG00000007658lsm310095.098Amphiprion_ocellaris
ENSXETG00000011534lsm310095.098ENSAPEG00000018621lsm310095.098Amphiprion_percula
ENSXETG00000011534lsm310095.098ENSATEG00000005153lsm310095.098Anabas_testudineus
ENSXETG00000011534lsm393100.000ENSAPLG00000014499LSM3100100.000Anas_platyrhynchos
ENSXETG00000011534lsm310097.059ENSACAG00000013503LSM310097.059Anolis_carolinensis
ENSXETG00000011534lsm310095.098ENSANAG00000002903-10095.098Aotus_nancymaae
ENSXETG00000011534lsm310098.039ENSANAG00000034627LSM310098.039Aotus_nancymaae
ENSXETG00000011534lsm39596.907ENSACLG00000001726-9496.907Astatotilapia_calliptera
ENSXETG00000011534lsm310097.059ENSAMXG00000041214lsm310097.059Astyanax_mexicanus
ENSXETG00000011534lsm394100.000ENSBTAG00000007363LSM3100100.000Bos_taurus
ENSXETG00000011534lsm310069.608WBGene00003077lsm-310069.608Caenorhabditis_elegans
ENSXETG00000011534lsm310096.078ENSCAFG00000001760LSM310096.078Canis_familiaris
ENSXETG00000011534lsm310089.216ENSCAFG00020016680-10089.216Canis_lupus_dingo
ENSXETG00000011534lsm310087.850ENSCAFG00020020950-10087.850Canis_lupus_dingo
ENSXETG00000011534lsm310096.078ENSCAFG00020017266-10096.078Canis_lupus_dingo
ENSXETG00000011534lsm310096.078ENSCAFG00020021584-10096.078Canis_lupus_dingo
ENSXETG00000011534lsm310095.098ENSCAFG00020026452-10095.098Canis_lupus_dingo
ENSXETG00000011534lsm310098.039ENSCHIG00000024650LSM310098.039Capra_hircus
ENSXETG00000011534lsm310099.020ENSTSYG00000005204-10099.020Carlito_syrichta
ENSXETG00000011534lsm39980.198ENSTSYG00000028528-9980.198Carlito_syrichta
ENSXETG00000011534lsm394100.000ENSCAPG00000015760LSM3100100.000Cavia_aperea
ENSXETG00000011534lsm310098.039ENSCPOG00000034071LSM310098.039Cavia_porcellus
ENSXETG00000011534lsm310078.431ENSCCAG00000032763-10078.431Cebus_capucinus
ENSXETG00000011534lsm310098.039ENSCCAG00000036499-10098.039Cebus_capucinus
ENSXETG00000011534lsm310098.039ENSCCAG00000019503-10098.039Cebus_capucinus
ENSXETG00000011534lsm310098.039ENSCATG00000039421LSM310098.039Cercocebus_atys
ENSXETG00000011534lsm39977.228ENSCATG00000031630-9977.228Cercocebus_atys
ENSXETG00000011534lsm310098.039ENSCLAG00000015997LSM310098.039Chinchilla_lanigera
ENSXETG00000011534lsm310093.137ENSCSAG00000019525-10093.137Chlorocebus_sabaeus
ENSXETG00000011534lsm310097.059ENSCPBG00000014531LSM310097.059Chrysemys_picta_bellii
ENSXETG00000011534lsm310080.769ENSCSAVG00000009542-10080.769Ciona_savignyi
ENSXETG00000011534lsm310098.039ENSCANG00000033944-10098.039Colobus_angolensis_palliatus
ENSXETG00000011534lsm310095.098ENSCANG00000038037-10095.098Colobus_angolensis_palliatus
ENSXETG00000011534lsm310093.137ENSCANG00000018782-10093.137Colobus_angolensis_palliatus
ENSXETG00000011534lsm39883.000ENSCGRG00001011396-10083.000Cricetulus_griseus_chok1gshd
ENSXETG00000011534lsm310098.039ENSCGRG00001017598Lsm310098.039Cricetulus_griseus_chok1gshd
ENSXETG00000011534lsm310074.757ENSCGRG00001008639-10074.757Cricetulus_griseus_chok1gshd
ENSXETG00000011534lsm310098.039ENSCGRG00000016159Lsm310098.039Cricetulus_griseus_crigri
ENSXETG00000011534lsm39384.211ENSCGRG00000012129-10084.211Cricetulus_griseus_crigri
ENSXETG00000011534lsm310095.098ENSCSEG00000015071lsm37795.098Cynoglossus_semilaevis
ENSXETG00000011534lsm310094.118ENSCVAG00000006933lsm310094.118Cyprinodon_variegatus
ENSXETG00000011534lsm310098.039ENSDARG00000089663lsm310098.039Danio_rerio
ENSXETG00000011534lsm310098.039ENSDNOG00000030808LSM310098.039Dasypus_novemcinctus
ENSXETG00000011534lsm310098.039ENSDORG00000006894-10098.039Dipodomys_ordii
ENSXETG00000011534lsm310078.431ENSDORG00000024490-10078.431Dipodomys_ordii
ENSXETG00000011534lsm310077.670FBgn0051184LSm310077.670Drosophila_melanogaster
ENSXETG00000011534lsm310098.039ENSETEG00000016207LSM310098.039Echinops_telfairi
ENSXETG00000011534lsm310089.216ENSEBUG00000004943lsm310089.216Eptatretus_burgeri
ENSXETG00000011534lsm310098.039ENSEASG00005015443LSM310098.039Equus_asinus_asinus
ENSXETG00000011534lsm310098.039ENSECAG00000007803LSM310098.039Equus_caballus
ENSXETG00000011534lsm310096.078ENSELUG00000018922lsm310096.078Esox_lucius
ENSXETG00000011534lsm310098.039ENSFCAG00000038453LSM310098.039Felis_catus
ENSXETG00000011534lsm310073.529ENSFCAG00000044344-10073.529Felis_catus
ENSXETG00000011534lsm310097.059ENSFALG00000012644LSM310097.059Ficedula_albicollis
ENSXETG00000011534lsm310098.039ENSFDAG00000011470LSM310098.039Fukomys_damarensis
ENSXETG00000011534lsm310095.098ENSFHEG00000000876lsm310095.098Fundulus_heteroclitus
ENSXETG00000011534lsm39396.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSXETG00000011534lsm310095.098ENSGAFG00000013965lsm310095.098Gambusia_affinis
ENSXETG00000011534lsm310095.098ENSGACG00000003488lsm310095.098Gasterosteus_aculeatus
ENSXETG00000011534lsm310097.059ENSGAGG00000025707LSM310097.059Gopherus_agassizii
ENSXETG00000011534lsm310098.039ENSGGOG00000010006LSM310098.039Gorilla_gorilla
ENSXETG00000011534lsm310095.098ENSHBUG00000022399lsm310095.098Haplochromis_burtoni
ENSXETG00000011534lsm310078.431ENSHGLG00000015564-10078.431Heterocephalus_glaber_female
ENSXETG00000011534lsm310098.039ENSHGLG00000000651LSM310098.039Heterocephalus_glaber_female
ENSXETG00000011534lsm310078.431ENSHGLG00100010658-10078.431Heterocephalus_glaber_male
ENSXETG00000011534lsm310098.039ENSHGLG00100011343LSM310098.039Heterocephalus_glaber_male
ENSXETG00000011534lsm310094.118ENSHCOG00000013481lsm310094.118Hippocampus_comes
ENSXETG00000011534lsm310097.059ENSIPUG00000009207lsm310097.059Ictalurus_punctatus
ENSXETG00000011534lsm310098.039ENSSTOG00000006842LSM310098.039Ictidomys_tridecemlineatus
ENSXETG00000011534lsm39975.490ENSJJAG00000018311-10075.490Jaculus_jaculus
ENSXETG00000011534lsm310098.039ENSJJAG00000017351Lsm310098.039Jaculus_jaculus
ENSXETG00000011534lsm310089.216ENSJJAG00000012797-10089.216Jaculus_jaculus
ENSXETG00000011534lsm310094.118ENSKMAG00000015182lsm310094.118Kryptolebias_marmoratus
ENSXETG00000011534lsm39595.876ENSLBEG00000021292lsm39995.876Labrus_bergylta
ENSXETG00000011534lsm310095.098ENSLOCG00000013560lsm310095.098Lepisosteus_oculatus
ENSXETG00000011534lsm310097.087ENSLAFG00000023308LSM310097.087Loxodonta_africana
ENSXETG00000011534lsm310098.039ENSMFAG00000003185LSM310098.039Macaca_fascicularis
ENSXETG00000011534lsm310076.471ENSMMUG00000043596-10076.471Macaca_mulatta
ENSXETG00000011534lsm310098.039ENSMMUG00000023126LSM310098.039Macaca_mulatta
ENSXETG00000011534lsm39380.000ENSMMUG00000002294-9180.000Macaca_mulatta
ENSXETG00000011534lsm39979.208ENSMNEG00000037686-9979.208Macaca_nemestrina
ENSXETG00000011534lsm310098.039ENSMNEG00000043632LSM310098.039Macaca_nemestrina
ENSXETG00000011534lsm310098.039ENSMLEG00000036162LSM310098.039Mandrillus_leucophaeus
ENSXETG00000011534lsm310095.098ENSMAMG00000012807lsm310095.098Mastacembelus_armatus
ENSXETG00000011534lsm310095.098ENSMZEG00005016682lsm37395.098Maylandia_zebra
ENSXETG00000011534lsm394100.000ENSMGAG00000007776LSM3100100.000Meleagris_gallopavo
ENSXETG00000011534lsm310097.059ENSMICG00000032361-10097.059Microcebus_murinus
ENSXETG00000011534lsm310083.333ENSMICG00000027821-10083.333Microcebus_murinus
ENSXETG00000011534lsm310098.039ENSMOCG00000014269Lsm310098.039Microtus_ochrogaster
ENSXETG00000011534lsm310094.118ENSMMOG00000020715lsm310094.118Mola_mola
ENSXETG00000011534lsm310098.039ENSMODG00000007275LSM310098.039Monodelphis_domestica
ENSXETG00000011534lsm310095.098ENSMALG00000006485lsm310095.098Monopterus_albus
ENSXETG00000011534lsm310098.039ENSMUSG00000034192Lsm310098.039Mus_musculus
ENSXETG00000011534lsm310098.039MGP_PahariEiJ_G0022402Lsm310098.039Mus_pahari
ENSXETG00000011534lsm310098.039MGP_SPRETEiJ_G0029681Lsm310098.039Mus_spretus
ENSXETG00000011534lsm39786.869ENSMPUG00000019120-9786.869Mustela_putorius_furo
ENSXETG00000011534lsm38390.588ENSMPUG00000017256-10090.588Mustela_putorius_furo
ENSXETG00000011534lsm310092.157ENSMLUG00000024700-10092.157Myotis_lucifugus
ENSXETG00000011534lsm310098.039ENSMLUG00000010677LSM310098.039Myotis_lucifugus
ENSXETG00000011534lsm310098.039ENSNGAG00000022450Lsm310098.039Nannospalax_galili
ENSXETG00000011534lsm39979.208ENSNGAG00000010207-9979.208Nannospalax_galili
ENSXETG00000011534lsm310074.510ENSNGAG00000013716-10074.510Nannospalax_galili
ENSXETG00000011534lsm310095.098ENSNBRG00000014318lsm310095.098Neolamprologus_brichardi
ENSXETG00000011534lsm310098.039ENSNLEG00000005079LSM310098.039Nomascus_leucogenys
ENSXETG00000011534lsm310089.216ENSNLEG00000030229-10089.216Nomascus_leucogenys
ENSXETG00000011534lsm310090.196ENSODEG00000019403-10090.196Octodon_degus
ENSXETG00000011534lsm310098.039ENSODEG00000001726LSM310098.039Octodon_degus
ENSXETG00000011534lsm310096.078ENSODEG00000019158-10096.078Octodon_degus
ENSXETG00000011534lsm310097.059ENSODEG00000019740-10097.059Octodon_degus
ENSXETG00000011534lsm310095.098ENSONIG00000000370lsm310095.098Oreochromis_niloticus
ENSXETG00000011534lsm310095.098ENSONIG00000021369-10095.098Oreochromis_niloticus
ENSXETG00000011534lsm310098.039ENSOANG00000012273LSM310098.039Ornithorhynchus_anatinus
ENSXETG00000011534lsm310093.137ENSOCUG00000011088-10093.137Oryctolagus_cuniculus
ENSXETG00000011534lsm310098.039ENSOCUG00000027653-10098.039Oryctolagus_cuniculus
ENSXETG00000011534lsm310094.118ENSORLG00000025900lsm310094.118Oryzias_latipes
ENSXETG00000011534lsm310094.118ENSORLG00020007125lsm310094.118Oryzias_latipes_hni
ENSXETG00000011534lsm310094.118ENSORLG00015002944lsm310094.118Oryzias_latipes_hsok
ENSXETG00000011534lsm310094.118ENSOMEG00000001915lsm310094.118Oryzias_melastigma
ENSXETG00000011534lsm310098.039ENSOGAG00000007659-10098.039Otolemur_garnettii
ENSXETG00000011534lsm310088.235ENSOGAG00000033051-10088.235Otolemur_garnettii
ENSXETG00000011534lsm39696.939ENSOGAG00000028858-10096.939Otolemur_garnettii
ENSXETG00000011534lsm310097.087ENSOARG00000000600LSM310097.087Ovis_aries
ENSXETG00000011534lsm310098.039ENSPPAG00000034074LSM310098.039Pan_paniscus
ENSXETG00000011534lsm39991.089ENSPPRG00000010610-8991.089Panthera_pardus
ENSXETG00000011534lsm310098.039ENSPPRG00000012912-10098.039Panthera_pardus
ENSXETG00000011534lsm310097.059ENSPPRG00000020953-10097.059Panthera_pardus
ENSXETG00000011534lsm310098.039ENSPTIG00000003463-10098.039Panthera_tigris_altaica
ENSXETG00000011534lsm310098.039ENSPTIG00000013072-10098.039Panthera_tigris_altaica
ENSXETG00000011534lsm310098.039ENSPTRG00000014650LSM310098.039Pan_troglodytes
ENSXETG00000011534lsm310098.039ENSPANG00000009378LSM310098.039Papio_anubis
ENSXETG00000011534lsm310077.451ENSPANG00000032192-10077.451Papio_anubis
ENSXETG00000011534lsm310098.039ENSPKIG00000008037lsm39198.039Paramormyrops_kingsleyae
ENSXETG00000011534lsm310097.059ENSPSIG00000015720LSM310097.059Pelodiscus_sinensis
ENSXETG00000011534lsm39592.784ENSPMGG00000012103lsm39892.784Periophthalmus_magnuspinnatus
ENSXETG00000011534lsm310081.373ENSPEMG00000020213-10081.373Peromyscus_maniculatus_bairdii
ENSXETG00000011534lsm310098.039ENSPEMG00000015797Lsm310098.039Peromyscus_maniculatus_bairdii
ENSXETG00000011534lsm310095.098ENSPFOG00000008372lsm310095.098Poecilia_formosa
ENSXETG00000011534lsm310095.098ENSPLAG00000000563lsm310095.098Poecilia_latipinna
ENSXETG00000011534lsm310095.098ENSPMEG00000022052lsm310095.098Poecilia_mexicana
ENSXETG00000011534lsm310095.098ENSPREG00000022485lsm310095.098Poecilia_reticulata
ENSXETG00000011534lsm310098.039ENSPPYG00000013402LSM310098.039Pongo_abelii
ENSXETG00000011534lsm310098.039ENSPCAG00000017077LSM310098.039Procavia_capensis
ENSXETG00000011534lsm39475.000ENSPCOG00000014435-9875.000Propithecus_coquereli
ENSXETG00000011534lsm310097.059ENSPCOG00000016217-10097.059Propithecus_coquereli
ENSXETG00000011534lsm310098.039ENSPVAG00000016795LSM310098.039Pteropus_vampyrus
ENSXETG00000011534lsm310095.098ENSPNYG00000009552lsm37395.098Pundamilia_nyererei
ENSXETG00000011534lsm310097.059ENSPNAG00000023467lsm310097.059Pygocentrus_nattereri
ENSXETG00000011534lsm310098.039ENSRNOG00000008733Lsm310098.039Rattus_norvegicus
ENSXETG00000011534lsm310081.373ENSRBIG00000043783-10081.373Rhinopithecus_bieti
ENSXETG00000011534lsm310098.039ENSRBIG00000034399LSM310098.039Rhinopithecus_bieti
ENSXETG00000011534lsm310087.255ENSRROG00000044047-10087.255Rhinopithecus_roxellana
ENSXETG00000011534lsm310080.392ENSRROG00000044056-10080.392Rhinopithecus_roxellana
ENSXETG00000011534lsm310098.039ENSRROG00000033276-10098.039Rhinopithecus_roxellana
ENSXETG00000011534lsm310082.353ENSRROG00000039868-10082.353Rhinopithecus_roxellana
ENSXETG00000011534lsm310098.039ENSSBOG00000024310LSM310098.039Saimiri_boliviensis_boliviensis
ENSXETG00000011534lsm310097.059ENSSFOG00015007071lsm310097.059Scleropages_formosus
ENSXETG00000011534lsm310095.098ENSSMAG00000001818lsm310095.098Scophthalmus_maximus
ENSXETG00000011534lsm310095.098ENSSDUG00000006040lsm310095.098Seriola_dumerili
ENSXETG00000011534lsm310095.098ENSSLDG00000006399lsm310095.098Seriola_lalandi_dorsalis
ENSXETG00000011534lsm357100.000ENSSARG00000005275-100100.000Sorex_araneus
ENSXETG00000011534lsm393100.000ENSSPUG00000017047-99100.000Sphenodon_punctatus
ENSXETG00000011534lsm310087.255ENSSPUG00000005394LSM310087.255Sphenodon_punctatus
ENSXETG00000011534lsm310084.314ENSSPAG00000000934lsm310084.314Stegastes_partitus
ENSXETG00000011534lsm310098.039ENSSSCG00000011601LSM310098.039Sus_scrofa
ENSXETG00000011534lsm39575.258ENSSSCG00000023718-9975.258Sus_scrofa
ENSXETG00000011534lsm310097.059ENSTGUG00000008327LSM310097.059Taeniopygia_guttata
ENSXETG00000011534lsm310094.118ENSTRUG00000023175lsm310094.118Takifugu_rubripes
ENSXETG00000011534lsm310094.118ENSTNIG00000005589lsm310094.118Tetraodon_nigroviridis
ENSXETG00000011534lsm310088.235ENSTBEG00000001050-9988.235Tupaia_belangeri
ENSXETG00000011534lsm310098.039ENSTTRG00000011197LSM310098.039Tursiops_truncatus
ENSXETG00000011534lsm310098.039ENSUAMG00000017250-10098.039Ursus_americanus
ENSXETG00000011534lsm310098.039ENSUMAG00000015905LSM310098.039Ursus_maritimus
ENSXETG00000011534lsm393100.000ENSVPAG00000010709LSM3100100.000Vicugna_pacos
ENSXETG00000011534lsm310089.216ENSVVUG00000024228-10089.216Vulpes_vulpes
ENSXETG00000011534lsm310094.118ENSVVUG00000029294-10094.118Vulpes_vulpes
ENSXETG00000011534lsm310093.137ENSVVUG00000006481-10093.137Vulpes_vulpes
ENSXETG00000011534lsm310094.118ENSVVUG00000007332-9194.118Vulpes_vulpes
ENSXETG00000011534lsm310093.137ENSVVUG00000005684-10093.137Vulpes_vulpes
ENSXETG00000011534lsm310095.098ENSXCOG00000017432LSM310095.098Xiphophorus_couchianus
ENSXETG00000011534lsm310095.098ENSXMAG00000009151lsm310095.098Xiphophorus_maculatus

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