EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000011592 (Gene tree)
Gene ID: -
Gene Symbol: fam172a
Alias: -
Full Name: Xenopus tropicalis family with sequence similarity 172 member A (fam172a)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 252578 bases
Position: chrGL172694.1:563729-816306
Accession: NM_001004971
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000063866	Arb2	PF09757.9	3.6e-10	1	1
ENSXETP00000025347	Arb2	PF09757.9	3.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000025347	-	3196	-	ENSXETP00000025347	422 (aa)	XP_012815235	Q6DIP8
ENSXETT00000064604	-	3034	-	ENSXETP00000063866	422 (aa)	-	F7DN42

Gene Model

Click here to download ENSXETG00000011592's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000011592's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000011592	fam172a	91	41.039	ENSXETG00000033027	-	100	41.039

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000011592	fam172a	96	82.512	ENSG00000113391	FAM172A	100	82.210	Homo_sapiens
ENSXETG00000011592	fam172a	55	38.494	ENSAPLG00000011555	-	100	38.494	Anas_platyrhynchos
ENSXETG00000011592	fam172a	99	80.144	ENSAPLG00000004055	FAM172A	100	80.144	Anas_platyrhynchos
ENSXETG00000011592	fam172a	91	79.427	ENSACAG00000013305	FAM172A	95	81.793	Anolis_carolinensis
ENSXETG00000011592	fam172a	88	75.538	ENSANAG00000035869	FAM172A	93	75.000	Aotus_nancymaae
ENSXETG00000011592	fam172a	96	81.773	ENSBTAG00000050195	FAM172A	98	81.707	Bos_taurus
ENSXETG00000011592	fam172a	96	81.773	ENSCJAG00000010444	FAM172A	98	81.707	Callithrix_jacchus
ENSXETG00000011592	fam172a	85	83.333	ENSCAFG00000008064	FAM172A	97	83.242	Canis_familiaris
ENSXETG00000011592	fam172a	96	81.527	ENSCAFG00020006210	FAM172A	98	81.463	Canis_lupus_dingo
ENSXETG00000011592	fam172a	96	81.773	ENSCHIG00000008440	FAM172A	98	81.707	Capra_hircus
ENSXETG00000011592	fam172a	63	81.273	ENSTSYG00000006286	FAM172A	85	81.273	Carlito_syrichta
ENSXETG00000011592	fam172a	53	76.106	ENSCAPG00000014103	-	100	76.106	Cavia_aperea
ENSXETG00000011592	fam172a	96	81.281	ENSCCAG00000023116	FAM172A	100	80.863	Cebus_capucinus
ENSXETG00000011592	fam172a	99	73.206	ENSCLAG00000005472	FAM172A	100	73.206	Chinchilla_lanigera
ENSXETG00000011592	fam172a	85	41.892	ENSCPBG00000004402	-	96	41.892	Chrysemys_picta_bellii
ENSXETG00000011592	fam172a	64	81.550	ENSCANG00000040412	FAM172A	92	81.550	Colobus_angolensis_palliatus
ENSXETG00000011592	fam172a	96	81.281	ENSDNOG00000004689	FAM172A	98	81.220	Dasypus_novemcinctus
ENSXETG00000011592	fam172a	64	80.443	ENSDORG00000013558	Fam172a	88	80.443	Dipodomys_ordii
ENSXETG00000011592	fam172a	84	37.398	ENSEBUG00000016097	-	70	37.398	Eptatretus_burgeri
ENSXETG00000011592	fam172a	96	79.310	ENSECAG00000018274	FAM172A	96	82.094	Equus_caballus
ENSXETG00000011592	fam172a	95	70.896	ENSEEUG00000002887	FAM172A	99	69.544	Erinaceus_europaeus
ENSXETG00000011592	fam172a	97	65.542	ENSELUG00000017647	fam172a	97	65.542	Esox_lucius
ENSXETG00000011592	fam172a	96	81.527	ENSFCAG00000025443	FAM172A	98	81.463	Felis_catus
ENSXETG00000011592	fam172a	88	81.351	ENSFALG00000009072	FAM172A	99	81.351	Ficedula_albicollis
ENSXETG00000011592	fam172a	85	41.944	ENSFALG00000006501	-	100	41.944	Ficedula_albicollis
ENSXETG00000011592	fam172a	98	82.126	ENSGALG00000014661	FAM172A	99	82.126	Gallus_gallus
ENSXETG00000011592	fam172a	83	43.503	ENSGAGG00000022828	-	93	43.503	Gopherus_agassizii
ENSXETG00000011592	fam172a	100	81.991	ENSGAGG00000003839	FAM172A	99	82.850	Gopherus_agassizii
ENSXETG00000011592	fam172a	96	82.020	ENSGGOG00000010296	FAM172A	98	81.951	Gorilla_gorilla
ENSXETG00000011592	fam172a	96	80.049	ENSHGLG00000011178	FAM172A	98	80.000	Heterocephalus_glaber_female
ENSXETG00000011592	fam172a	85	82.451	ENSHGLG00100013340	FAM172A	97	82.369	Heterocephalus_glaber_male
ENSXETG00000011592	fam172a	96	81.527	ENSSTOG00000009918	FAM172A	98	81.463	Ictidomys_tridecemlineatus
ENSXETG00000011592	fam172a	87	45.799	ENSLACG00000001532	si:ch73-41e3.7	96	45.799	Latimeria_chalumnae
ENSXETG00000011592	fam172a	97	74.757	ENSLOCG00000001629	fam172a	98	74.576	Lepisosteus_oculatus
ENSXETG00000011592	fam172a	64	81.550	ENSMFAG00000001171	FAM172A	92	81.550	Macaca_fascicularis
ENSXETG00000011592	fam172a	91	82.461	ENSMNEG00000039938	FAM172A	92	81.550	Macaca_nemestrina
ENSXETG00000011592	fam172a	99	79.952	ENSMICG00000030403	FAM172A	100	79.952	Microcebus_murinus
ENSXETG00000011592	fam172a	88	79.515	ENSMOCG00000003613	Fam172a	100	79.515	Microtus_ochrogaster
ENSXETG00000011592	fam172a	99	79.904	ENSMODG00000020131	FAM172A	100	79.904	Monodelphis_domestica
ENSXETG00000011592	fam172a	88	64.151	MGP_PahariEiJ_G0015818	Fam172a	100	64.151	Mus_pahari
ENSXETG00000011592	fam172a	88	81.671	ENSNGAG00000019570	Fam172a	100	81.671	Nannospalax_galili
ENSXETG00000011592	fam172a	64	81.550	ENSNLEG00000013903	FAM172A	89	81.550	Nomascus_leucogenys
ENSXETG00000011592	fam172a	85	84.637	ENSOANG00000011068	FAM172A	95	84.637	Ornithorhynchus_anatinus
ENSXETG00000011592	fam172a	94	81.266	ENSOCUG00000007299	FAM172A	94	81.203	Oryctolagus_cuniculus
ENSXETG00000011592	fam172a	96	81.281	ENSOGAG00000015189	FAM172A	98	81.220	Otolemur_garnettii
ENSXETG00000011592	fam172a	88	80.863	ENSOARG00000016711	FAM172A	85	80.800	Ovis_aries
ENSXETG00000011592	fam172a	64	81.550	ENSPPAG00000030542	FAM172A	92	81.550	Pan_paniscus
ENSXETG00000011592	fam172a	96	81.527	ENSPPRG00000006653	FAM172A	98	81.463	Panthera_pardus
ENSXETG00000011592	fam172a	96	81.527	ENSPTIG00000012681	FAM172A	98	81.463	Panthera_tigris_altaica
ENSXETG00000011592	fam172a	64	81.550	ENSPTRG00000017074	FAM172A	92	81.550	Pan_troglodytes
ENSXETG00000011592	fam172a	64	81.550	ENSPANG00000011687	FAM172A	92	81.550	Papio_anubis
ENSXETG00000011592	fam172a	94	72.796	ENSPKIG00000012314	fam172a	98	75.000	Paramormyrops_kingsleyae
ENSXETG00000011592	fam172a	100	78.910	ENSPEMG00000009604	-	100	78.910	Peromyscus_maniculatus_bairdii
ENSXETG00000011592	fam172a	99	80.144	ENSPCIG00000028612	FAM172A	100	80.144	Phascolarctos_cinereus
ENSXETG00000011592	fam172a	55	80.000	ENSPCOG00000024072	FAM172A	93	80.000	Propithecus_coquereli
ENSXETG00000011592	fam172a	64	78.889	ENSRNOG00000013844	Fam172a	99	78.889	Rattus_norvegicus
ENSXETG00000011592	fam172a	50	70.813	ENSRBIG00000028680	-	86	70.813	Rhinopithecus_bieti
ENSXETG00000011592	fam172a	64	81.550	ENSRROG00000023807	FAM172A	92	81.550	Rhinopithecus_roxellana
ENSXETG00000011592	fam172a	96	82.020	ENSSBOG00000019860	FAM172A	98	81.951	Saimiri_boliviensis_boliviensis
ENSXETG00000011592	fam172a	99	79.665	ENSSHAG00000013743	FAM172A	100	79.665	Sarcophilus_harrisii
ENSXETG00000011592	fam172a	98	80.918	ENSSPUG00000008161	FAM172A	99	80.918	Sphenodon_punctatus
ENSXETG00000011592	fam172a	99	80.576	ENSSSCG00000027608	FAM172A	100	81.671	Sus_scrofa
ENSXETG00000011592	fam172a	79	44.379	ENSTGUG00000013623	-	100	44.379	Taeniopygia_guttata
ENSXETG00000011592	fam172a	90	81.890	ENSTGUG00000000715	FAM172A	100	81.890	Taeniopygia_guttata
ENSXETG00000011592	fam172a	78	54.627	ENSTNIG00000009902	fam172a	100	57.186	Tetraodon_nigroviridis
ENSXETG00000011592	fam172a	100	77.962	ENSTTRG00000001521	FAM172A	98	80.000	Tursiops_truncatus
ENSXETG00000011592	fam172a	96	81.773	ENSUMAG00000005442	FAM172A	98	81.707	Ursus_maritimus
ENSXETG00000011592	fam172a	96	81.527	ENSVVUG00000022112	FAM172A	98	81.463	Vulpes_vulpes