EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000011858 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: -
Full Name: Xenopus tropicalis cms1 ribosomal small subunit homolog (cmss1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 187102 bases
Position: chrGL173169.1:129485-316586
Accession: NM_001016943
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000025914	CMS1	PF14617.6	5.5e-35	1	1
ENSXETP00000025914	DEAD	PF00270.29	2.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000025914	-	1024	-	ENSXETP00000025914	279 (aa)	-	A4IGS3

Gene Model

Click here to download ENSXETG00000011858's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000011858's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000011858	cmss1	100	54.122	ENSG00000184220	CMSS1	99	67.901	Homo_sapiens
ENSXETG00000011858	cmss1	73	61.576	ENSAPOG00000010604	cmss1	82	61.576	Acanthochromis_polyacanthus
ENSXETG00000011858	cmss1	87	59.919	ENSAMEG00000004092	CMSS1	95	59.919	Ailuropoda_melanoleuca
ENSXETG00000011858	cmss1	73	53.695	ENSACIG00000021854	cmss1	98	50.379	Amphilophus_citrinellus
ENSXETG00000011858	cmss1	100	51.903	ENSAOCG00000013361	cmss1	100	53.633	Amphiprion_ocellaris
ENSXETG00000011858	cmss1	100	52.069	ENSAPEG00000005829	cmss1	100	53.103	Amphiprion_percula
ENSXETG00000011858	cmss1	100	52.249	ENSATEG00000008209	cmss1	100	53.979	Anabas_testudineus
ENSXETG00000011858	cmss1	79	66.364	ENSAPLG00000010542	CMSS1	96	66.364	Anas_platyrhynchos
ENSXETG00000011858	cmss1	92	57.955	ENSACAG00000011065	CMSS1	96	57.955	Anolis_carolinensis
ENSXETG00000011858	cmss1	100	53.929	ENSANAG00000023565	CMSS1	100	53.929	Aotus_nancymaae
ENSXETG00000011858	cmss1	100	51.890	ENSACLG00000027294	cmss1	100	54.296	Astatotilapia_calliptera
ENSXETG00000011858	cmss1	100	48.814	ENSAMXG00000002046	cmss1	100	52.542	Astyanax_mexicanus
ENSXETG00000011858	cmss1	100	55.634	ENSBTAG00000013663	CMSS1	100	55.986	Bos_taurus
ENSXETG00000011858	cmss1	100	56.028	ENSCJAG00000000610	CMSS1	100	55.674	Callithrix_jacchus
ENSXETG00000011858	cmss1	93	56.044	ENSCAFG00000009230	CMSS1	98	56.044	Canis_familiaris
ENSXETG00000011858	cmss1	72	62.871	ENSCAFG00020024156	-	63	62.871	Canis_lupus_dingo
ENSXETG00000011858	cmss1	97	55.556	ENSCAFG00020009464	-	96	55.556	Canis_lupus_dingo
ENSXETG00000011858	cmss1	84	60.684	ENSCHIG00000013003	CMSS1	84	60.684	Capra_hircus
ENSXETG00000011858	cmss1	83	60.851	ENSTSYG00000009266	CMSS1	90	60.851	Carlito_syrichta
ENSXETG00000011858	cmss1	80	50.220	ENSCAPG00000013584	CMSS1	88	55.670	Cavia_aperea
ENSXETG00000011858	cmss1	100	57.244	ENSCPOG00000014680	CMSS1	100	57.597	Cavia_porcellus
ENSXETG00000011858	cmss1	100	55.319	ENSCCAG00000034685	CMSS1	100	55.319	Cebus_capucinus
ENSXETG00000011858	cmss1	100	54.804	ENSCATG00000031980	CMSS1	100	54.804	Cercocebus_atys
ENSXETG00000011858	cmss1	81	62.009	ENSCLAG00000011241	CMSS1	97	62.009	Chinchilla_lanigera
ENSXETG00000011858	cmss1	72	64.356	ENSCSAG00000006024	CMSS1	94	60.000	Chlorocebus_sabaeus
ENSXETG00000011858	cmss1	100	42.705	ENSCHOG00000012098	CMSS1	100	42.705	Choloepus_hoffmanni
ENSXETG00000011858	cmss1	70	42.640	ENSCING00000014848	-	96	45.000	Ciona_intestinalis
ENSXETG00000011858	cmss1	100	54.804	ENSCANG00000031337	CMSS1	100	54.804	Colobus_angolensis_palliatus
ENSXETG00000011858	cmss1	100	55.319	ENSCGRG00001014305	Cmss1	100	55.674	Cricetulus_griseus_chok1gshd
ENSXETG00000011858	cmss1	72	63.366	ENSCGRG00000006722	Cmss1	79	63.366	Cricetulus_griseus_crigri
ENSXETG00000011858	cmss1	100	49.338	ENSCSEG00000004958	cmss1	100	51.361	Cynoglossus_semilaevis
ENSXETG00000011858	cmss1	100	53.819	ENSCVAG00000005039	cmss1	100	54.514	Cyprinodon_variegatus
ENSXETG00000011858	cmss1	100	49.660	ENSDARG00000112579	cmss1	100	51.020	Danio_rerio
ENSXETG00000011858	cmss1	92	57.308	ENSDNOG00000040418	CMSS1	93	57.308	Dasypus_novemcinctus
ENSXETG00000011858	cmss1	100	56.338	ENSDORG00000010461	Cmss1	100	56.338	Dipodomys_ordii
ENSXETG00000011858	cmss1	82	62.338	ENSEASG00005010966	CMSS1	92	65.347	Equus_asinus_asinus
ENSXETG00000011858	cmss1	83	60.426	ENSECAG00000015662	CMSS1	97	62.613	Equus_caballus
ENSXETG00000011858	cmss1	100	38.214	ENSEEUG00000007624	-	100	38.214	Erinaceus_europaeus
ENSXETG00000011858	cmss1	100	50.166	ENSELUG00000019459	cmss1	100	50.166	Esox_lucius
ENSXETG00000011858	cmss1	100	57.394	ENSFCAG00000044577	CMSS1	100	57.394	Felis_catus
ENSXETG00000011858	cmss1	78	64.679	ENSFALG00000005816	CMSS1	92	64.679	Ficedula_albicollis
ENSXETG00000011858	cmss1	72	63.861	ENSFDAG00000012577	CMSS1	89	63.861	Fukomys_damarensis
ENSXETG00000011858	cmss1	73	61.084	ENSFHEG00000012008	cmss1	84	61.084	Fundulus_heteroclitus
ENSXETG00000011858	cmss1	99	53.405	ENSGMOG00000016729	cmss1	100	53.405	Gadus_morhua
ENSXETG00000011858	cmss1	96	57.621	ENSGALG00000015267	CMSS1	100	58.333	Gallus_gallus
ENSXETG00000011858	cmss1	74	60.870	ENSGAFG00000021217	cmss1	98	52.652	Gambusia_affinis
ENSXETG00000011858	cmss1	99	50.357	ENSGACG00000002798	cmss1	100	50.177	Gasterosteus_aculeatus
ENSXETG00000011858	cmss1	86	60.581	ENSGAGG00000019861	CMSS1	94	60.581	Gopherus_agassizii
ENSXETG00000011858	cmss1	72	64.356	ENSGGOG00000014125	CMSS1	77	64.356	Gorilla_gorilla
ENSXETG00000011858	cmss1	100	50.690	ENSHBUG00000008431	cmss1	100	54.828	Haplochromis_burtoni
ENSXETG00000011858	cmss1	89	59.919	ENSHGLG00000019481	CMSS1	93	63.319	Heterocephalus_glaber_female
ENSXETG00000011858	cmss1	89	59.919	ENSHGLG00100010314	CMSS1	91	63.319	Heterocephalus_glaber_male
ENSXETG00000011858	cmss1	100	47.119	ENSHCOG00000003222	cmss1	100	48.814	Hippocampus_comes
ENSXETG00000011858	cmss1	100	52.759	ENSIPUG00000011591	cmss1	100	52.577	Ictalurus_punctatus
ENSXETG00000011858	cmss1	100	57.244	ENSSTOG00000019366	CMSS1	100	57.244	Ictidomys_tridecemlineatus
ENSXETG00000011858	cmss1	100	57.295	ENSJJAG00000014894	Cmss1	100	57.244	Jaculus_jaculus
ENSXETG00000011858	cmss1	73	55.172	ENSKMAG00000002390	cmss1	97	49.219	Kryptolebias_marmoratus
ENSXETG00000011858	cmss1	73	53.431	ENSLBEG00000006298	cmss1	83	53.431	Labrus_bergylta
ENSXETG00000011858	cmss1	72	67.822	ENSLACG00000009293	CMSS1	88	67.822	Latimeria_chalumnae
ENSXETG00000011858	cmss1	100	51.590	ENSLOCG00000009391	cmss1	100	51.590	Lepisosteus_oculatus
ENSXETG00000011858	cmss1	72	65.500	ENSLAFG00000017509	CMSS1	89	65.347	Loxodonta_africana
ENSXETG00000011858	cmss1	100	54.448	ENSMFAG00000045006	CMSS1	100	54.448	Macaca_fascicularis
ENSXETG00000011858	cmss1	100	54.093	ENSMMUG00000002939	CMSS1	100	54.093	Macaca_mulatta
ENSXETG00000011858	cmss1	100	54.448	ENSMNEG00000031315	CMSS1	100	54.448	Macaca_nemestrina
ENSXETG00000011858	cmss1	100	54.804	ENSMLEG00000033660	CMSS1	100	54.804	Mandrillus_leucophaeus
ENSXETG00000011858	cmss1	100	53.793	ENSMAMG00000017176	cmss1	100	53.448	Mastacembelus_armatus
ENSXETG00000011858	cmss1	100	51.890	ENSMZEG00005021886	cmss1	100	54.296	Maylandia_zebra
ENSXETG00000011858	cmss1	72	67.327	ENSMGAG00000014360	CMSS1	89	67.327	Meleagris_gallopavo
ENSXETG00000011858	cmss1	100	37.324	ENSMAUG00000020609	Cmss1	100	37.676	Mesocricetus_auratus
ENSXETG00000011858	cmss1	100	56.383	ENSMICG00000048977	CMSS1	100	56.738	Microcebus_murinus
ENSXETG00000011858	cmss1	100	57.447	ENSMOCG00000021937	Cmss1	100	57.447	Microtus_ochrogaster
ENSXETG00000011858	cmss1	86	56.067	ENSMMOG00000019794	cmss1	99	56.067	Mola_mola
ENSXETG00000011858	cmss1	81	63.362	ENSMODG00000002275	CMSS1	88	63.362	Monodelphis_domestica
ENSXETG00000011858	cmss1	100	53.265	ENSMALG00000004250	cmss1	100	53.584	Monopterus_albus
ENSXETG00000011858	cmss1	100	54.577	MGP_CAROLIEiJ_G0020824	Cmss1	100	54.577	Mus_caroli
ENSXETG00000011858	cmss1	100	55.714	ENSMUSG00000022748	Cmss1	100	55.714	Mus_musculus
ENSXETG00000011858	cmss1	100	55.319	MGP_PahariEiJ_G0016524	Cmss1	100	55.319	Mus_pahari
ENSXETG00000011858	cmss1	100	55.357	MGP_SPRETEiJ_G0021724	Cmss1	100	55.357	Mus_spretus
ENSXETG00000011858	cmss1	83	61.111	ENSMPUG00000011324	CMSS1	90	61.111	Mustela_putorius_furo
ENSXETG00000011858	cmss1	83	59.916	ENSMLUG00000001131	CMSS1	89	59.916	Myotis_lucifugus
ENSXETG00000011858	cmss1	100	55.160	ENSNGAG00000020316	Cmss1	100	55.872	Nannospalax_galili
ENSXETG00000011858	cmss1	100	51.525	ENSNBRG00000003095	cmss1	100	54.296	Neolamprologus_brichardi
ENSXETG00000011858	cmss1	100	54.480	ENSNLEG00000034172	CMSS1	100	54.480	Nomascus_leucogenys
ENSXETG00000011858	cmss1	78	55.505	ENSMEUG00000014505	CMSS1	96	55.505	Notamacropus_eugenii
ENSXETG00000011858	cmss1	100	57.597	ENSOPRG00000002986	CMSS1	100	57.597	Ochotona_princeps
ENSXETG00000011858	cmss1	100	56.890	ENSODEG00000005226	-	100	56.890	Octodon_degus
ENSXETG00000011858	cmss1	100	46.786	ENSODEG00000009446	-	100	45.714	Octodon_degus
ENSXETG00000011858	cmss1	100	50.355	ENSODEG00000001853	-	100	50.355	Octodon_degus
ENSXETG00000011858	cmss1	100	53.147	ENSODEG00000003558	-	100	53.147	Octodon_degus
ENSXETG00000011858	cmss1	73	61.084	ENSONIG00000006678	cmss1	100	55.094	Oreochromis_niloticus
ENSXETG00000011858	cmss1	83	65.086	ENSOANG00000007529	CMSS1	87	68.317	Ornithorhynchus_anatinus
ENSXETG00000011858	cmss1	72	64.356	ENSOCUG00000025366	CMSS1	84	60.000	Oryctolagus_cuniculus
ENSXETG00000011858	cmss1	100	51.903	ENSORLG00000020340	cmss1	100	53.310	Oryzias_latipes
ENSXETG00000011858	cmss1	79	52.036	ENSORLG00020012235	cmss1	86	52.217	Oryzias_latipes_hni
ENSXETG00000011858	cmss1	73	54.187	ENSORLG00015015551	cmss1	76	54.187	Oryzias_latipes_hsok
ENSXETG00000011858	cmss1	100	51.203	ENSOMEG00000012555	cmss1	100	53.633	Oryzias_melastigma
ENSXETG00000011858	cmss1	80	61.261	ENSOGAG00000002045	CMSS1	96	61.712	Otolemur_garnettii
ENSXETG00000011858	cmss1	84	60.426	ENSOARG00000017899	CMSS1	80	60.426	Ovis_aries
ENSXETG00000011858	cmss1	72	64.356	ENSPPAG00000038515	CMSS1	96	54.244	Pan_paniscus
ENSXETG00000011858	cmss1	100	56.690	ENSPPRG00000016767	CMSS1	100	56.690	Panthera_pardus
ENSXETG00000011858	cmss1	100	56.940	ENSPTIG00000018274	CMSS1	100	56.940	Panthera_tigris_altaica
ENSXETG00000011858	cmss1	100	54.480	ENSPTRG00000015157	CMSS1	100	55.160	Pan_troglodytes
ENSXETG00000011858	cmss1	72	64.356	ENSPANG00000019980	CMSS1	80	64.356	Papio_anubis
ENSXETG00000011858	cmss1	95	53.521	ENSPKIG00000012609	cmss1	99	53.788	Paramormyrops_kingsleyae
ENSXETG00000011858	cmss1	79	66.968	ENSPSIG00000003849	CMSS1	97	66.968	Pelodiscus_sinensis
ENSXETG00000011858	cmss1	73	59.314	ENSPMGG00000010286	cmss1	88	59.314	Periophthalmus_magnuspinnatus
ENSXETG00000011858	cmss1	100	55.000	ENSPEMG00000016384	Cmss1	100	55.000	Peromyscus_maniculatus_bairdii
ENSXETG00000011858	cmss1	73	52.941	ENSPMAG00000001146	cmss1	99	53.202	Petromyzon_marinus
ENSXETG00000011858	cmss1	83	64.378	ENSPCIG00000015656	CMSS1	88	64.378	Phascolarctos_cinereus
ENSXETG00000011858	cmss1	100	50.350	ENSPFOG00000016849	cmss1	100	53.310	Poecilia_formosa
ENSXETG00000011858	cmss1	100	50.000	ENSPLAG00000008323	cmss1	100	52.962	Poecilia_latipinna
ENSXETG00000011858	cmss1	100	50.000	ENSPMEG00000021020	cmss1	100	53.448	Poecilia_mexicana
ENSXETG00000011858	cmss1	92	52.273	ENSPREG00000007618	cmss1	94	53.455	Poecilia_reticulata
ENSXETG00000011858	cmss1	100	53.763	ENSPPYG00000013606	CMSS1	100	53.763	Pongo_abelii
ENSXETG00000011858	cmss1	100	56.738	ENSPCOG00000020035	CMSS1	100	57.092	Propithecus_coquereli
ENSXETG00000011858	cmss1	100	45.907	ENSPVAG00000017031	CMSS1	100	45.907	Pteropus_vampyrus
ENSXETG00000011858	cmss1	91	53.208	ENSPNYG00000013428	cmss1	97	55.849	Pundamilia_nyererei
ENSXETG00000011858	cmss1	100	53.378	ENSPNAG00000007912	cmss1	100	53.378	Pygocentrus_nattereri
ENSXETG00000011858	cmss1	72	64.356	ENSRNOG00000027888	Cmss1	79	64.356	Rattus_norvegicus
ENSXETG00000011858	cmss1	100	54.448	ENSRBIG00000037931	CMSS1	100	54.448	Rhinopithecus_bieti
ENSXETG00000011858	cmss1	100	54.448	ENSRROG00000042910	CMSS1	100	54.448	Rhinopithecus_roxellana
ENSXETG00000011858	cmss1	83	59.657	ENSSBOG00000030980	CMSS1	89	59.657	Saimiri_boliviensis_boliviensis
ENSXETG00000011858	cmss1	72	67.327	ENSSHAG00000009321	CMSS1	87	65.158	Sarcophilus_harrisii
ENSXETG00000011858	cmss1	100	52.069	ENSSFOG00015001509	cmss1	100	54.266	Scleropages_formosus
ENSXETG00000011858	cmss1	100	51.546	ENSSMAG00000001653	cmss1	100	51.546	Scophthalmus_maximus
ENSXETG00000011858	cmss1	100	51.389	ENSSDUG00000007719	cmss1	100	53.448	Seriola_dumerili
ENSXETG00000011858	cmss1	74	60.386	ENSSLDG00000012300	cmss1	95	49.823	Seriola_lalandi_dorsalis
ENSXETG00000011858	cmss1	100	44.326	ENSSARG00000003584	CMSS1	100	44.326	Sorex_araneus
ENSXETG00000011858	cmss1	78	66.055	ENSSPUG00000003865	CMSS1	97	64.865	Sphenodon_punctatus
ENSXETG00000011858	cmss1	74	59.709	ENSSPAG00000019182	cmss1	81	48.014	Stegastes_partitus
ENSXETG00000011858	cmss1	100	55.830	ENSSSCG00000011970	CMSS1	100	55.830	Sus_scrofa
ENSXETG00000011858	cmss1	78	64.220	ENSTGUG00000013635	CMSS1	95	64.220	Taeniopygia_guttata
ENSXETG00000011858	cmss1	100	52.837	ENSTRUG00000015265	cmss1	100	54.325	Takifugu_rubripes
ENSXETG00000011858	cmss1	97	50.725	ENSTNIG00000002880	cmss1	99	50.725	Tetraodon_nigroviridis
ENSXETG00000011858	cmss1	100	37.589	ENSTBEG00000016722	CMSS1	100	37.589	Tupaia_belangeri
ENSXETG00000011858	cmss1	100	55.282	ENSTTRG00000001562	CMSS1	100	55.282	Tursiops_truncatus
ENSXETG00000011858	cmss1	97	54.770	ENSUAMG00000024209	CMSS1	95	62.338	Ursus_americanus
ENSXETG00000011858	cmss1	84	60.169	ENSUMAG00000001983	CMSS1	90	60.169	Ursus_maritimus
ENSXETG00000011858	cmss1	100	46.643	ENSVPAG00000000263	CMSS1	57	67.500	Vicugna_pacos
ENSXETG00000011858	cmss1	83	62.128	ENSVVUG00000021647	-	95	62.128	Vulpes_vulpes
ENSXETG00000011858	cmss1	72	64.356	ENSVVUG00000007776	-	80	64.356	Vulpes_vulpes
ENSXETG00000011858	cmss1	75	60.476	ENSXCOG00000018724	cmss1	94	52.000	Xiphophorus_couchianus
ENSXETG00000011858	cmss1	75	60.476	ENSXMAG00000011243	cmss1	98	52.453	Xiphophorus_maculatus