EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000012054 (Gene tree)
Gene ID: -
Gene Symbol: prpf6
Alias: -
Full Name: Xenopus tropicalis pre-mRNA processing factor 6 (prpf6)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 13832 bases
Position: chrGL174148.1:16786-30617
Accession: NM_001030471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000026326	PRP1_N	PF06424.12	1.1e-57	1	1
ENSXETP00000060586	PRP1_N	PF06424.12	5.6e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000026326	-	3739	-	ENSXETP00000026326	972 (aa)	-	F7BVS2
ENSXETT00000063747	-	3734	-	ENSXETP00000060586	972 (aa)	-	F6XM26

Gene Model

Click here to download ENSXETG00000012054's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000012054's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000012054	prpf6	97	95.430	ENSG00000101161	PRPF6	100	95.005	Homo_sapiens
ENSXETG00000012054	prpf6	97	92.447	ENSAPOG00000010395	prpf6	96	92.872	Acanthochromis_polyacanthus
ENSXETG00000012054	prpf6	97	94.609	ENSAMEG00000001916	PRPF6	99	94.186	Ailuropoda_melanoleuca
ENSXETG00000012054	prpf6	97	92.021	ENSACIG00000019862	prpf6	99	90.476	Amphilophus_citrinellus
ENSXETG00000012054	prpf6	97	92.447	ENSAOCG00000012988	prpf6	96	92.872	Amphiprion_ocellaris
ENSXETG00000012054	prpf6	97	85.532	ENSAPEG00000008301	prpf6	100	86.170	Amphiprion_percula
ENSXETG00000012054	prpf6	97	91.915	ENSATEG00000005581	prpf6	96	92.340	Anabas_testudineus
ENSXETG00000012054	prpf6	98	95.996	ENSACAG00000006464	PRPF6	97	95.283	Anolis_carolinensis
ENSXETG00000012054	prpf6	97	95.430	ENSANAG00000012661	PRPF6	100	95.642	Aotus_nancymaae
ENSXETG00000012054	prpf6	97	91.915	ENSACLG00000025875	prpf6	96	92.340	Astatotilapia_calliptera
ENSXETG00000012054	prpf6	97	92.055	ENSAMXG00000001929	prpf6	96	92.479	Astyanax_mexicanus
ENSXETG00000012054	prpf6	97	95.643	ENSBTAG00000011656	PRPF6	100	95.218	Bos_taurus
ENSXETG00000012054	prpf6	97	95.430	ENSCJAG00000010616	PRPF6	100	95.005	Callithrix_jacchus
ENSXETG00000012054	prpf6	97	95.962	ENSCAFG00000013165	PRPF6	100	95.537	Canis_familiaris
ENSXETG00000012054	prpf6	97	95.962	ENSCAFG00020002050	PRPF6	100	95.537	Canis_lupus_dingo
ENSXETG00000012054	prpf6	97	95.643	ENSCHIG00000018187	PRPF6	100	95.218	Capra_hircus
ENSXETG00000012054	prpf6	97	96.174	ENSTSYG00000007814	PRPF6	100	95.749	Carlito_syrichta
ENSXETG00000012054	prpf6	94	94.984	ENSCAPG00000015077	PRPF6	100	94.111	Cavia_aperea
ENSXETG00000012054	prpf6	97	96.281	ENSCPOG00000007518	PRPF6	100	96.281	Cavia_porcellus
ENSXETG00000012054	prpf6	97	92.349	ENSCCAG00000024564	PRPF6	100	91.923	Cebus_capucinus
ENSXETG00000012054	prpf6	97	95.537	ENSCATG00000037473	PRPF6	100	95.112	Cercocebus_atys
ENSXETG00000012054	prpf6	97	92.774	ENSCLAG00000003854	PRPF6	100	92.136	Chinchilla_lanigera
ENSXETG00000012054	prpf6	97	90.707	ENSCSAG00000016742	PRPF6	100	90.074	Chlorocebus_sabaeus
ENSXETG00000012054	prpf6	82	79.187	ENSCHOG00000003315	-	98	78.843	Choloepus_hoffmanni
ENSXETG00000012054	prpf6	99	95.639	ENSCPBG00000013964	PRPF6	98	96.226	Chrysemys_picta_bellii
ENSXETG00000012054	prpf6	97	72.956	ENSCING00000008817	-	99	72.956	Ciona_intestinalis
ENSXETG00000012054	prpf6	97	95.324	ENSCANG00000038230	PRPF6	100	94.899	Colobus_angolensis_palliatus
ENSXETG00000012054	prpf6	97	96.493	ENSCGRG00001022666	Prpf6	100	96.493	Cricetulus_griseus_chok1gshd
ENSXETG00000012054	prpf6	97	87.021	ENSCSEG00000018561	prpf6	100	87.447	Cynoglossus_semilaevis
ENSXETG00000012054	prpf6	97	92.447	ENSCVAG00000010550	prpf6	96	92.872	Cyprinodon_variegatus
ENSXETG00000012054	prpf6	98	91.245	ENSDARG00000091367	prpf6	99	91.667	Danio_rerio
ENSXETG00000012054	prpf6	97	95.430	ENSDNOG00000040544	PRPF6	100	95.430	Dasypus_novemcinctus
ENSXETG00000012054	prpf6	88	96.145	ENSDORG00000005406	Prpf6	100	96.145	Dipodomys_ordii
ENSXETG00000012054	prpf6	97	71.670	FBgn0036828	CG6841	99	71.670	Drosophila_melanogaster
ENSXETG00000012054	prpf6	83	94.006	ENSETEG00000004447	PRPF6	85	94.006	Echinops_telfairi
ENSXETG00000012054	prpf6	97	86.957	ENSEBUG00000008835	prpf6	99	86.744	Eptatretus_burgeri
ENSXETG00000012054	prpf6	98	94.742	ENSEASG00005023115	PRPF6	100	95.005	Equus_asinus_asinus
ENSXETG00000012054	prpf6	97	91.392	ENSECAG00000013983	PRPF6	100	90.967	Equus_caballus
ENSXETG00000012054	prpf6	87	100.000	ENSEEUG00000000180	PRPF6	81	100.000	Erinaceus_europaeus
ENSXETG00000012054	prpf6	97	91.383	ENSELUG00000001945	prpf6	93	91.383	Esox_lucius
ENSXETG00000012054	prpf6	97	95.855	ENSFCAG00000001183	PRPF6	100	95.430	Felis_catus
ENSXETG00000012054	prpf6	99	86.845	ENSFALG00000006046	-	99	87.201	Ficedula_albicollis
ENSXETG00000012054	prpf6	98	95.368	ENSFALG00000010326	-	98	95.368	Ficedula_albicollis
ENSXETG00000012054	prpf6	97	94.798	ENSFDAG00000006451	PRPF6	100	95.351	Fukomys_damarensis
ENSXETG00000012054	prpf6	97	92.979	ENSFHEG00000000560	prpf6	96	92.979	Fundulus_heteroclitus
ENSXETG00000012054	prpf6	97	89.735	ENSGMOG00000015622	prpf6	99	89.735	Gadus_morhua
ENSXETG00000012054	prpf6	97	95.962	ENSGALG00000006001	PRPF6	100	95.962	Gallus_gallus
ENSXETG00000012054	prpf6	97	87.660	ENSGAFG00000021109	prpf6	96	88.085	Gambusia_affinis
ENSXETG00000012054	prpf6	97	91.064	ENSGACG00000002576	prpf6	99	91.064	Gasterosteus_aculeatus
ENSXETG00000012054	prpf6	99	95.535	ENSGAGG00000008653	PRPF6	98	96.122	Gopherus_agassizii
ENSXETG00000012054	prpf6	97	95.430	ENSGGOG00000016876	PRPF6	100	95.005	Gorilla_gorilla
ENSXETG00000012054	prpf6	97	91.915	ENSHBUG00000004496	prpf6	96	92.340	Haplochromis_burtoni
ENSXETG00000012054	prpf6	97	96.174	ENSHGLG00000009222	PRPF6	100	95.749	Heterocephalus_glaber_female
ENSXETG00000012054	prpf6	94	96.074	ENSHGLG00100016600	PRPF6	100	95.638	Heterocephalus_glaber_male
ENSXETG00000012054	prpf6	97	91.383	ENSHCOG00000011513	prpf6	98	90.239	Hippocampus_comes
ENSXETG00000012054	prpf6	99	91.134	ENSIPUG00000004912	prpf6	96	93.191	Ictalurus_punctatus
ENSXETG00000012054	prpf6	97	93.418	ENSSTOG00000002922	PRPF6	100	92.781	Ictidomys_tridecemlineatus
ENSXETG00000012054	prpf6	97	96.281	ENSJJAG00000000836	Prpf6	100	96.281	Jaculus_jaculus
ENSXETG00000012054	prpf6	97	92.021	ENSKMAG00000017800	prpf6	96	92.447	Kryptolebias_marmoratus
ENSXETG00000012054	prpf6	97	91.809	ENSLBEG00000012582	prpf6	96	91.809	Labrus_bergylta
ENSXETG00000012054	prpf6	98	93.579	ENSLOCG00000004827	prpf6	97	92.211	Lepisosteus_oculatus
ENSXETG00000012054	prpf6	97	95.643	ENSLAFG00000005272	PRPF6	100	95.218	Loxodonta_africana
ENSXETG00000012054	prpf6	97	95.324	ENSMFAG00000037542	PRPF6	100	94.899	Macaca_fascicularis
ENSXETG00000012054	prpf6	97	89.172	ENSMMUG00000015558	PRPF6	98	96.187	Macaca_mulatta
ENSXETG00000012054	prpf6	97	81.992	ENSMNEG00000045555	PRPF6	100	81.568	Macaca_nemestrina
ENSXETG00000012054	prpf6	97	92.128	ENSMAMG00000010718	prpf6	98	91.032	Mastacembelus_armatus
ENSXETG00000012054	prpf6	97	91.392	ENSMZEG00005015261	-	99	91.817	Maylandia_zebra
ENSXETG00000012054	prpf6	91	91.373	ENSMZEG00005026539	prpf6	100	91.827	Maylandia_zebra
ENSXETG00000012054	prpf6	94	95.856	ENSMGAG00000006634	PRPF6	100	95.856	Meleagris_gallopavo
ENSXETG00000012054	prpf6	97	96.493	ENSMAUG00000013969	Prpf6	100	96.493	Mesocricetus_auratus
ENSXETG00000012054	prpf6	85	95.255	ENSMICG00000017793	PRPF6	98	95.191	Microcebus_murinus
ENSXETG00000012054	prpf6	97	96.493	ENSMOCG00000001701	Prpf6	100	96.493	Microtus_ochrogaster
ENSXETG00000012054	prpf6	97	91.596	ENSMMOG00000020419	prpf6	100	92.021	Mola_mola
ENSXETG00000012054	prpf6	94	96.671	ENSMODG00000017051	PRPF6	99	96.671	Monodelphis_domestica
ENSXETG00000012054	prpf6	96	92.151	ENSMALG00000000089	prpf6	100	92.151	Monopterus_albus
ENSXETG00000012054	prpf6	97	89.904	MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	Mus_caroli
ENSXETG00000012054	prpf6	97	96.493	ENSMUSG00000002455	Prpf6	100	98.148	Mus_musculus
ENSXETG00000012054	prpf6	97	96.493	MGP_PahariEiJ_G0026262	Prpf6	100	98.148	Mus_pahari
ENSXETG00000012054	prpf6	97	96.493	MGP_SPRETEiJ_G0025741	Prpf6	100	98.148	Mus_spretus
ENSXETG00000012054	prpf6	88	95.828	ENSMPUG00000008673	PRPF6	99	95.352	Mustela_putorius_furo
ENSXETG00000012054	prpf6	97	96.387	ENSNGAG00000003365	Prpf6	100	96.387	Nannospalax_galili
ENSXETG00000012054	prpf6	97	92.021	ENSNBRG00000015025	prpf6	96	92.447	Neolamprologus_brichardi
ENSXETG00000012054	prpf6	97	95.324	ENSNLEG00000010208	PRPF6	100	94.899	Nomascus_leucogenys
ENSXETG00000012054	prpf6	97	86.546	ENSMEUG00000009824	-	90	86.759	Notamacropus_eugenii
ENSXETG00000012054	prpf6	97	90.436	ENSODEG00000004841	PRPF6	100	89.798	Octodon_degus
ENSXETG00000012054	prpf6	97	91.915	ENSONIG00000017406	prpf6	96	92.340	Oreochromis_niloticus
ENSXETG00000012054	prpf6	97	96.387	ENSOANG00000004920	PRPF6	100	96.387	Ornithorhynchus_anatinus
ENSXETG00000012054	prpf6	96	94.421	ENSOCUG00000014151	PRPF6	100	93.991	Oryctolagus_cuniculus
ENSXETG00000012054	prpf6	97	91.915	ENSORLG00000009592	prpf6	98	90.531	Oryzias_latipes
ENSXETG00000012054	prpf6	97	92.021	ENSORLG00020001458	prpf6	98	90.635	Oryzias_latipes_hni
ENSXETG00000012054	prpf6	97	92.021	ENSORLG00015018762	prpf6	98	90.635	Oryzias_latipes_hsok
ENSXETG00000012054	prpf6	97	91.809	ENSOMEG00000012174	prpf6	96	92.234	Oryzias_melastigma
ENSXETG00000012054	prpf6	97	88.747	ENSOGAG00000007573	PRPF6	100	88.110	Otolemur_garnettii
ENSXETG00000012054	prpf6	97	94.926	ENSOARG00000008776	PRPF6	99	94.503	Ovis_aries
ENSXETG00000012054	prpf6	97	95.430	ENSPPAG00000008686	PRPF6	100	95.005	Pan_paniscus
ENSXETG00000012054	prpf6	97	95.855	ENSPPRG00000008497	PRPF6	100	95.430	Panthera_pardus
ENSXETG00000012054	prpf6	94	95.747	ENSPTIG00000011184	PRPF6	97	95.311	Panthera_tigris_altaica
ENSXETG00000012054	prpf6	97	95.430	ENSPTRG00000013765	PRPF6	100	95.005	Pan_troglodytes
ENSXETG00000012054	prpf6	97	95.430	ENSPANG00000024135	PRPF6	100	95.005	Papio_anubis
ENSXETG00000012054	prpf6	98	93.579	ENSPKIG00000005627	prpf6	99	93.579	Paramormyrops_kingsleyae
ENSXETG00000012054	prpf6	91	96.259	ENSPSIG00000007717	PRPF6	100	96.259	Pelodiscus_sinensis
ENSXETG00000012054	prpf6	99	88.066	ENSPMGG00000008925	prpf6	96	90.542	Periophthalmus_magnuspinnatus
ENSXETG00000012054	prpf6	97	96.599	ENSPEMG00000016036	Prpf6	100	96.599	Peromyscus_maniculatus_bairdii
ENSXETG00000012054	prpf6	97	87.553	ENSPMAG00000006144	prpf6	99	87.553	Petromyzon_marinus
ENSXETG00000012054	prpf6	97	96.281	ENSPCIG00000017909	PRPF6	100	96.281	Phascolarctos_cinereus
ENSXETG00000012054	prpf6	97	92.340	ENSPFOG00000006431	prpf6	96	92.766	Poecilia_formosa
ENSXETG00000012054	prpf6	97	92.234	ENSPLAG00000005974	prpf6	96	92.660	Poecilia_latipinna
ENSXETG00000012054	prpf6	97	92.447	ENSPMEG00000009977	prpf6	96	92.872	Poecilia_mexicana
ENSXETG00000012054	prpf6	97	92.340	ENSPREG00000017993	prpf6	93	91.728	Poecilia_reticulata
ENSXETG00000012054	prpf6	97	94.899	ENSPPYG00000011256	PRPF6	100	94.474	Pongo_abelii
ENSXETG00000012054	prpf6	92	97.712	ENSPCAG00000006536	PRPF6	88	97.712	Procavia_capensis
ENSXETG00000012054	prpf6	97	95.537	ENSPCOG00000016881	PRPF6	100	95.112	Propithecus_coquereli
ENSXETG00000012054	prpf6	97	89.798	ENSPVAG00000014316	PRPF6	100	89.373	Pteropus_vampyrus
ENSXETG00000012054	prpf6	97	75.452	ENSPNYG00000001939	prpf6	96	80.745	Pundamilia_nyererei
ENSXETG00000012054	prpf6	98	92.089	ENSPNAG00000015606	prpf6	97	92.511	Pygocentrus_nattereri
ENSXETG00000012054	prpf6	97	96.387	ENSRNOG00000051498	Prpf6	100	96.387	Rattus_norvegicus
ENSXETG00000012054	prpf6	97	95.324	ENSRBIG00000043613	PRPF6	100	94.899	Rhinopithecus_bieti
ENSXETG00000012054	prpf6	97	92.275	ENSRROG00000040969	PRPF6	98	95.502	Rhinopithecus_roxellana
ENSXETG00000012054	prpf6	88	92.212	ENSSBOG00000020632	PRPF6	93	89.965	Saimiri_boliviensis_boliviensis
ENSXETG00000012054	prpf6	97	96.281	ENSSHAG00000016810	PRPF6	100	96.281	Sarcophilus_harrisii
ENSXETG00000012054	prpf6	96	94.194	ENSSFOG00015020859	prpf6	100	94.194	Scleropages_formosus
ENSXETG00000012054	prpf6	97	91.702	ENSSMAG00000008112	prpf6	99	89.752	Scophthalmus_maximus
ENSXETG00000012054	prpf6	97	92.128	ENSSDUG00000016142	prpf6	98	91.137	Seriola_dumerili
ENSXETG00000012054	prpf6	97	92.128	ENSSLDG00000025283	prpf6	98	91.137	Seriola_lalandi_dorsalis
ENSXETG00000012054	prpf6	91	95.238	ENSSPUG00000018260	PRPF6	100	94.558	Sphenodon_punctatus
ENSXETG00000012054	prpf6	97	92.128	ENSSPAG00000015850	prpf6	96	92.553	Stegastes_partitus
ENSXETG00000012054	prpf6	99	93.776	ENSSSCG00000029119	PRPF6	100	94.331	Sus_scrofa
ENSXETG00000012054	prpf6	97	95.869	ENSTGUG00000007221	PRPF6	100	95.869	Taeniopygia_guttata
ENSXETG00000012054	prpf6	97	91.489	ENSTRUG00000002920	prpf6	98	90.447	Takifugu_rubripes
ENSXETG00000012054	prpf6	97	85.111	ENSTNIG00000017873	prpf6	100	85.533	Tetraodon_nigroviridis
ENSXETG00000012054	prpf6	86	97.790	ENSTBEG00000005348	PRPF6	85	95.580	Tupaia_belangeri
ENSXETG00000012054	prpf6	97	95.324	ENSTTRG00000013068	PRPF6	100	94.899	Tursiops_truncatus
ENSXETG00000012054	prpf6	95	94.239	ENSUMAG00000021631	PRPF6	98	93.804	Ursus_maritimus
ENSXETG00000012054	prpf6	97	95.962	ENSVVUG00000014948	PRPF6	100	95.537	Vulpes_vulpes
ENSXETG00000012054	prpf6	97	92.447	ENSXCOG00000008082	prpf6	96	92.872	Xiphophorus_couchianus
ENSXETG00000012054	prpf6	97	92.447	ENSXMAG00000015581	prpf6	96	92.872	Xiphophorus_maculatus