EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000012465 (Gene tree)
Gene ID: -
Gene Symbol: polr2a
Alias: -
Full Name: polymerase (RNA) II (DNA directed) polypeptide A%2C 220kDa
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 13108 bases
Position: chrGL173966.1:79469-92576
Accession: XB-GENE-6257521
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000027254	RNA_pol_Rpb1_5	PF04998.17	8.7e-101	1	1
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	1	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	2	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	3	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	4	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	5	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	6	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	7	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	8	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	9	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	10	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	11	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	12	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	13	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	14	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	15	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	16	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	17	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	18	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	19	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	20	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	21	22
ENSXETP00000027254	RNA_pol_Rpb1_R	PF05001.13	4.9e-22	22	22
ENSXETP00000027254	RNA_pol_Rpb1_4	PF05000.17	3.1e-38	1	1
ENSXETP00000027254	RNA_pol_Rpb1_2	PF00623.20	3e-75	1	1
ENSXETP00000027254	RNA_pol_Rpb1_3	PF04983.18	6.9e-50	1	1
ENSXETP00000027254	RNA_pol_Rpb1_1	PF04997.12	6.9e-103	1	1
ENSXETP00000027254	RNA_pol_Rpb1_7	PF04990.12	1.5e-54	1	1
ENSXETP00000027254	RNA_pol_Rpb1_6	PF04992.14	2.2e-70	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000027254	-	5841	-	ENSXETP00000027254	1946 (aa)	-	F7BLR6

Gene Model

Click here to download ENSXETG00000012465's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000012465's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000012465	polr2a	51	40.116	ENSXETG00000018101	polr3a	85	39.886
ENSXETG00000012465	polr2a	52	50.588	ENSXETG00000001952	polr1a	63	43.243

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000012465	polr2a	91	94.280	ENSAPOG00000006552	polr2a	92	94.273	Acanthochromis_polyacanthus
ENSXETG00000012465	polr2a	100	96.822	ENSAMEG00000016265	-	99	96.822	Ailuropoda_melanoleuca
ENSXETG00000012465	polr2a	82	92.080	ENSACIG00000015982	polr2a	80	92.070	Amphilophus_citrinellus
ENSXETG00000012465	polr2a	98	96.273	ENSAOCG00000004255	polr2a	92	96.273	Amphiprion_ocellaris
ENSXETG00000012465	polr2a	82	94.406	ENSAPEG00000012623	polr2a	81	94.399	Amphiprion_percula
ENSXETG00000012465	polr2a	82	93.966	ENSATEG00000019644	polr2a	81	93.958	Anabas_testudineus
ENSXETG00000012465	polr2a	100	97.382	ENSACAG00000014561	POLR2A	99	97.382	Anolis_carolinensis
ENSXETG00000012465	polr2a	100	96.971	ENSANAG00000020093	-	99	96.971	Aotus_nancymaae
ENSXETG00000012465	polr2a	82	93.840	ENSACLG00000006735	polr2a	81	93.833	Astatotilapia_calliptera
ENSXETG00000012465	polr2a	82	94.155	ENSAMXG00000020046	polr2a	81	94.147	Astyanax_mexicanus
ENSXETG00000012465	polr2a	100	96.920	ENSBTAG00000046765	POLR2A	99	96.920	Bos_taurus
ENSXETG00000012465	polr2a	99	70.155	WBGene00000123	ama-1	99	72.727	Caenorhabditis_elegans
ENSXETG00000012465	polr2a	100	96.663	ENSCAFG00000016532	POLR2A	99	96.663	Canis_familiaris
ENSXETG00000012465	polr2a	100	93.994	ENSCAFG00020007929	-	99	94.507	Canis_lupus_dingo
ENSXETG00000012465	polr2a	100	96.920	ENSCHIG00000027173	-	99	96.920	Capra_hircus
ENSXETG00000012465	polr2a	100	94.610	ENSTSYG00000012803	-	99	95.123	Carlito_syrichta
ENSXETG00000012465	polr2a	99	92.766	ENSCAPG00000001882	-	99	98.758	Cavia_aperea
ENSXETG00000012465	polr2a	100	95.536	ENSCPOG00000014812	-	99	98.758	Cavia_porcellus
ENSXETG00000012465	polr2a	100	96.971	ENSCCAG00000020938	-	99	96.971	Cebus_capucinus
ENSXETG00000012465	polr2a	100	96.971	ENSCATG00000013680	-	99	96.971	Cercocebus_atys
ENSXETG00000012465	polr2a	100	96.869	ENSCLAG00000012196	-	99	96.869	Chinchilla_lanigera
ENSXETG00000012465	polr2a	82	87.930	ENSCSAG00000011644	-	81	87.930	Chlorocebus_sabaeus
ENSXETG00000012465	polr2a	100	92.556	ENSCPBG00000012697	POLR2A	99	92.556	Chrysemys_picta_bellii
ENSXETG00000012465	polr2a	99	76.852	ENSCING00000007884	-	99	77.125	Ciona_intestinalis
ENSXETG00000012465	polr2a	97	83.333	ENSCSAVG00000008334	-	100	79.279	Ciona_savignyi
ENSXETG00000012465	polr2a	100	96.304	ENSCANG00000010622	-	99	96.304	Colobus_angolensis_palliatus
ENSXETG00000012465	polr2a	82	90.343	ENSCGRG00001003538	Polr2a	83	89.048	Cricetulus_griseus_chok1gshd
ENSXETG00000012465	polr2a	82	93.097	ENSCGRG00000012105	Polr2a	84	93.035	Cricetulus_griseus_crigri
ENSXETG00000012465	polr2a	82	93.715	ENSCSEG00000002635	polr2a	81	93.707	Cynoglossus_semilaevis
ENSXETG00000012465	polr2a	82	94.092	ENSCVAG00000005156	polr2a	81	94.084	Cyprinodon_variegatus
ENSXETG00000012465	polr2a	82	93.970	ENSDARG00000099966	polr2a	81	93.962	Danio_rerio
ENSXETG00000012465	polr2a	100	94.302	ENSDNOG00000016482	-	99	94.302	Dasypus_novemcinctus
ENSXETG00000012465	polr2a	100	96.971	ENSDORG00000008667	Polr2a	99	96.971	Dipodomys_ordii
ENSXETG00000012465	polr2a	99	69.995	FBgn0003277	RpII215	98	75.063	Drosophila_melanogaster
ENSXETG00000012465	polr2a	91	92.829	ENSETEG00000002540	-	83	93.739	Echinops_telfairi
ENSXETG00000012465	polr2a	81	88.328	ENSEBUG00000013967	polr2a	81	87.728	Eptatretus_burgeri
ENSXETG00000012465	polr2a	82	94.840	ENSEASG00005019114	-	82	94.840	Equus_asinus_asinus
ENSXETG00000012465	polr2a	100	96.920	ENSECAG00000018485	POLR2A	99	96.920	Equus_caballus
ENSXETG00000012465	polr2a	88	96.816	ENSEEUG00000001154	-	93	96.816	Erinaceus_europaeus
ENSXETG00000012465	polr2a	88	89.576	ENSELUG00000014284	polr2a	83	90.119	Esox_lucius
ENSXETG00000012465	polr2a	100	96.971	ENSFDAG00000008287	-	99	96.971	Fukomys_damarensis
ENSXETG00000012465	polr2a	85	94.029	ENSFHEG00000001768	polr2a	95	94.021	Fundulus_heteroclitus
ENSXETG00000012465	polr2a	99	89.775	ENSGMOG00000007725	polr2a	99	89.828	Gadus_morhua
ENSXETG00000012465	polr2a	98	92.958	ENSGAFG00000005389	polr2a	99	92.008	Gambusia_affinis
ENSXETG00000012465	polr2a	99	90.654	ENSGACG00000019366	polr2a	99	88.129	Gasterosteus_aculeatus
ENSXETG00000012465	polr2a	100	95.184	ENSGGOG00000014800	-	99	95.184	Gorilla_gorilla
ENSXETG00000012465	polr2a	89	91.640	ENSHBUG00000018937	polr2a	95	93.833	Haplochromis_burtoni
ENSXETG00000012465	polr2a	100	96.971	ENSHGLG00000012381	POLR2A	99	96.971	Heterocephalus_glaber_female
ENSXETG00000012465	polr2a	100	96.971	ENSHGLG00100014843	POLR2A	99	96.971	Heterocephalus_glaber_male
ENSXETG00000012465	polr2a	82	93.966	ENSHCOG00000011874	polr2a	81	93.958	Hippocampus_comes
ENSXETG00000012465	polr2a	82	93.903	ENSIPUG00000002613	Polr2a	81	93.896	Ictalurus_punctatus
ENSXETG00000012465	polr2a	100	96.971	ENSSTOG00000001304	-	99	96.971	Ictidomys_tridecemlineatus
ENSXETG00000012465	polr2a	100	97.074	ENSJJAG00000013049	Polr2a	99	97.074	Jaculus_jaculus
ENSXETG00000012465	polr2a	80	84.385	ENSKMAG00000016343	polr2a	84	84.576	Kryptolebias_marmoratus
ENSXETG00000012465	polr2a	82	94.029	ENSLBEG00000027652	polr2a	81	94.021	Labrus_bergylta
ENSXETG00000012465	polr2a	81	86.844	ENSLACG00000012071	POLR2A	81	86.899	Latimeria_chalumnae
ENSXETG00000012465	polr2a	90	95.918	ENSLOCG00000013863	polr2a	94	98.758	Lepisosteus_oculatus
ENSXETG00000012465	polr2a	100	96.920	ENSLAFG00000008626	-	99	96.920	Loxodonta_africana
ENSXETG00000012465	polr2a	100	96.971	ENSMMUG00000023620	-	99	96.971	Macaca_mulatta
ENSXETG00000012465	polr2a	100	96.573	ENSMNEG00000040407	-	99	96.573	Macaca_nemestrina
ENSXETG00000012465	polr2a	82	92.313	ENSMLEG00000030263	-	97	94.984	Mandrillus_leucophaeus
ENSXETG00000012465	polr2a	82	94.343	ENSMAMG00000003351	polr2a	81	94.336	Mastacembelus_armatus
ENSXETG00000012465	polr2a	82	93.840	ENSMZEG00005021429	polr2a	81	93.833	Maylandia_zebra
ENSXETG00000012465	polr2a	50	96.640	ENSMAUG00000021055	-	99	96.640	Mesocricetus_auratus
ENSXETG00000012465	polr2a	100	96.971	ENSMICG00000013372	-	99	96.971	Microcebus_murinus
ENSXETG00000012465	polr2a	100	95.536	ENSMOCG00000018279	Polr2a	94	98.758	Microtus_ochrogaster
ENSXETG00000012465	polr2a	84	93.715	ENSMMOG00000012515	polr2a	92	93.707	Mola_mola
ENSXETG00000012465	polr2a	100	97.074	ENSMODG00000007009	-	99	97.074	Monodelphis_domestica
ENSXETG00000012465	polr2a	91	94.040	ENSMALG00000008716	polr2a	91	94.084	Monopterus_albus
ENSXETG00000012465	polr2a	100	96.920	MGP_CAROLIEiJ_G0016587	Polr2a	99	96.920	Mus_caroli
ENSXETG00000012465	polr2a	100	96.920	ENSMUSG00000005198	Polr2a	99	96.920	Mus_musculus
ENSXETG00000012465	polr2a	82	94.799	MGP_PahariEiJ_G0017718	Polr2a	81	94.799	Mus_pahari
ENSXETG00000012465	polr2a	100	96.920	MGP_SPRETEiJ_G0017423	Polr2a	99	96.920	Mus_spretus
ENSXETG00000012465	polr2a	100	96.920	ENSMPUG00000009648	-	99	96.920	Mustela_putorius_furo
ENSXETG00000012465	polr2a	100	96.462	ENSMLUG00000009088	-	99	96.462	Myotis_lucifugus
ENSXETG00000012465	polr2a	100	96.971	ENSNGAG00000002543	Polr2a	99	96.971	Nannospalax_galili
ENSXETG00000012465	polr2a	82	91.703	ENSNBRG00000002005	polr2a	80	91.693	Neolamprologus_brichardi
ENSXETG00000012465	polr2a	100	95.799	ENSNLEG00000009460	-	99	95.799	Nomascus_leucogenys
ENSXETG00000012465	polr2a	94	97.879	ENSMEUG00000008611	-	91	97.879	Notamacropus_eugenii
ENSXETG00000012465	polr2a	80	96.669	ENSOPRG00000015116	-	99	96.669	Ochotona_princeps
ENSXETG00000012465	polr2a	82	93.966	ENSONIG00000009231	polr2a	81	93.958	Oreochromis_niloticus
ENSXETG00000012465	polr2a	99	93.015	ENSOCUG00000017929	-	99	96.790	Oryctolagus_cuniculus
ENSXETG00000012465	polr2a	82	94.029	ENSORLG00000006431	polr2a	81	94.021	Oryzias_latipes
ENSXETG00000012465	polr2a	82	94.029	ENSORLG00020010235	polr2a	81	94.021	Oryzias_latipes_hni
ENSXETG00000012465	polr2a	82	94.029	ENSORLG00015007075	polr2a	81	94.021	Oryzias_latipes_hsok
ENSXETG00000012465	polr2a	92	94.077	ENSOMEG00000010713	polr2a	99	94.077	Oryzias_melastigma
ENSXETG00000012465	polr2a	100	96.971	ENSOGAG00000033608	-	99	96.971	Otolemur_garnettii
ENSXETG00000012465	polr2a	98	96.681	ENSOARG00000013874	-	99	96.681	Ovis_aries
ENSXETG00000012465	polr2a	100	93.994	ENSPPAG00000043734	-	99	94.507	Pan_paniscus
ENSXETG00000012465	polr2a	100	95.799	ENSPTRG00000008691	POLR2A	99	95.799	Pan_troglodytes
ENSXETG00000012465	polr2a	100	96.304	ENSPANG00000024099	-	99	96.304	Papio_anubis
ENSXETG00000012465	polr2a	77	92.750	ENSPKIG00000005727	polr2a	83	83.960	Paramormyrops_kingsleyae
ENSXETG00000012465	polr2a	98	95.508	ENSPSIG00000014006	POLR2A	99	95.508	Pelodiscus_sinensis
ENSXETG00000012465	polr2a	100	93.654	ENSPMGG00000019734	polr2a	99	94.084	Periophthalmus_magnuspinnatus
ENSXETG00000012465	polr2a	100	96.971	ENSPEMG00000012521	Polr2a	99	96.971	Peromyscus_maniculatus_bairdii
ENSXETG00000012465	polr2a	96	85.144	ENSPCIG00000028851	-	95	85.144	Phascolarctos_cinereus
ENSXETG00000012465	polr2a	85	94.155	ENSPFOG00000007890	polr2a	83	94.147	Poecilia_formosa
ENSXETG00000012465	polr2a	90	90.201	ENSPLAG00000007399	polr2a	89	90.189	Poecilia_latipinna
ENSXETG00000012465	polr2a	90	92.018	ENSPMEG00000002071	polr2a	89	92.008	Poecilia_mexicana
ENSXETG00000012465	polr2a	82	94.092	ENSPREG00000013122	polr2a	81	94.084	Poecilia_reticulata
ENSXETG00000012465	polr2a	100	94.564	ENSPPYG00000007924	-	99	95.897	Pongo_abelii
ENSXETG00000012465	polr2a	73	96.883	ENSPCAG00000006951	-	73	96.883	Procavia_capensis
ENSXETG00000012465	polr2a	100	95.874	ENSPCOG00000025260	-	99	95.874	Propithecus_coquereli
ENSXETG00000012465	polr2a	100	96.766	ENSPVAG00000005069	-	99	96.766	Pteropus_vampyrus
ENSXETG00000012465	polr2a	82	93.903	ENSPNYG00000022340	polr2a	81	93.896	Pundamilia_nyererei
ENSXETG00000012465	polr2a	82	94.092	ENSPNAG00000011237	polr2a	81	94.084	Pygocentrus_nattereri
ENSXETG00000012465	polr2a	100	96.920	ENSRNOG00000028834	Polr2a	99	96.920	Rattus_norvegicus
ENSXETG00000012465	polr2a	82	96.539	ENSRBIG00000002471	-	99	93.789	Rhinopithecus_bieti
ENSXETG00000012465	polr2a	100	96.612	ENSRROG00000029583	-	99	96.612	Rhinopithecus_roxellana
ENSXETG00000012465	polr2a	81	49.781	YDL140C	RPO21	98	82.584	Saccharomyces_cerevisiae
ENSXETG00000012465	polr2a	100	96.971	ENSSBOG00000000808	-	99	96.971	Saimiri_boliviensis_boliviensis
ENSXETG00000012465	polr2a	92	97.042	ENSSHAG00000002858	-	99	94.815	Sarcophilus_harrisii
ENSXETG00000012465	polr2a	82	94.092	ENSSFOG00015023275	polr2a	81	94.084	Scleropages_formosus
ENSXETG00000012465	polr2a	82	93.840	ENSSMAG00000009137	polr2a	81	93.833	Scophthalmus_maximus
ENSXETG00000012465	polr2a	82	94.343	ENSSDUG00000020466	polr2a	81	94.336	Seriola_dumerili
ENSXETG00000012465	polr2a	82	94.343	ENSSLDG00000020613	polr2a	81	94.336	Seriola_lalandi_dorsalis
ENSXETG00000012465	polr2a	98	92.242	ENSSARG00000005875	-	98	92.242	Sorex_araneus
ENSXETG00000012465	polr2a	100	96.273	ENSSPAG00000016741	polr2a	93	96.273	Stegastes_partitus
ENSXETG00000012465	polr2a	100	96.201	ENSSSCG00000028278	-	99	96.201	Sus_scrofa
ENSXETG00000012465	polr2a	99	88.317	ENSTRUG00000012320	polr2a	80	88.302	Takifugu_rubripes
ENSXETG00000012465	polr2a	99	92.772	ENSTNIG00000010136	polr2a	99	92.763	Tetraodon_nigroviridis
ENSXETG00000012465	polr2a	74	97.959	ENSTBEG00000013294	-	57	97.959	Tupaia_belangeri
ENSXETG00000012465	polr2a	100	95.534	ENSTTRG00000014273	-	99	95.534	Tursiops_truncatus
ENSXETG00000012465	polr2a	92	96.547	ENSUAMG00000014866	-	92	96.547	Ursus_americanus
ENSXETG00000012465	polr2a	99	94.833	ENSUMAG00000015732	-	99	94.833	Ursus_maritimus
ENSXETG00000012465	polr2a	64	98.913	ENSVPAG00000008842	-	76	98.913	Vicugna_pacos
ENSXETG00000012465	polr2a	100	94.106	ENSVVUG00000027878	-	99	95.637	Vulpes_vulpes
ENSXETG00000012465	polr2a	89	91.955	ENSXCOG00000001804	polr2a	93	91.945	Xiphophorus_couchianus
ENSXETG00000012465	polr2a	82	94.092	ENSXMAG00000015687	polr2a	81	94.084	Xiphophorus_maculatus