EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXETG00000012469 (Gene tree)
Gene ID
-
Gene Symbol
puf60
Alias
-
Full Name
Xenopus tropicalis poly(U) binding splicing factor 60KDa (puf60)%2C mRNA.
Gene Type
protein_coding
Species
Xenopus_tropicalis
Status
putative
Strand
Minus strand
Length
15411 bases
Position
chrGL174521.1:6297-21707
Accession
NM_001126610
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXETP00000027266RRM_1PF00076.222.4e-4412
ENSXETP00000027266RRM_1PF00076.222.4e-4422
ENSXETP00000027265RRM_1PF00076.222.9e-4412
ENSXETP00000027265RRM_1PF00076.222.9e-4422
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXETT00000027266-1656-ENSXETP00000027266507 (aa)-B0BMQ2
ENSXETT00000027265-1679-ENSXETP00000027265530 (aa)-F7BLD3
Gene Model
Click here to download ENSXETG00000012469's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000012469's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXETG00000012469puf605538.938ENSXETG00000019128u2af26638.938
ENSXETG00000012469puf608033.333ENSXETG00000014344celf55233.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXETG00000012469puf609994.246ENSG00000179950PUF6010094.389Homo_sapiens
ENSXETG00000012469puf609983.629ENSAPOG00000001713puf60b9883.779Acanthochromis_polyacanthus
ENSXETG00000012469puf609992.176ENSAMEG00000006406PUF609491.985Ailuropoda_melanoleuca
ENSXETG00000012469puf609775.816ENSACIG00000003263-9976.054Amphilophus_citrinellus
ENSXETG00000012469puf609783.493ENSACIG00000021705puf60b10083.301Amphilophus_citrinellus
ENSXETG00000012469puf609780.577ENSAOCG00000015558-9780.962Amphiprion_ocellaris
ENSXETG00000012469puf609983.629ENSAOCG00000005395puf60b10084.261Amphiprion_ocellaris
ENSXETG00000012469puf609874.405ENSAPEG00000001836-9974.853Amphiprion_percula
ENSXETG00000012469puf609981.262ENSAPEG00000011923puf60b9881.065Amphiprion_percula
ENSXETG00000012469puf609883.429ENSATEG00000001730puf60b9883.429Anabas_testudineus
ENSXETG00000012469puf609880.460ENSATEG00000006303-9880.651Anabas_testudineus
ENSXETG00000012469puf609894.423ENSAPLG00000010150PUF609994.423Anas_platyrhynchos
ENSXETG00000012469puf609992.966ENSACAG00000001645PUF609892.803Anolis_carolinensis
ENSXETG00000012469puf609994.071ENSANAG00000018626PUF6010094.380Aotus_nancymaae
ENSXETG00000012469puf609883.135ENSACLG00000004462puf60b10083.301Astatotilapia_calliptera
ENSXETG00000012469puf609982.975ENSAMXG00000036570puf60a9782.779Astyanax_mexicanus
ENSXETG00000012469puf609875.969ENSAMXG00000041030puf60b10074.532Astyanax_mexicanus
ENSXETG00000012469puf609994.632ENSBTAG00000037493PUF609994.615Bos_taurus
ENSXETG00000012469puf607952.650WBGene00004389rnp-68353.497Caenorhabditis_elegans
ENSXETG00000012469puf609994.444ENSCJAG00000021485PUF609993.371Callithrix_jacchus
ENSXETG00000012469puf609994.831ENSCAFG00000001400PUF609493.893Canis_familiaris
ENSXETG00000012469puf609994.831ENSCAFG00020018754PUF609993.561Canis_lupus_dingo
ENSXETG00000012469puf609994.084ENSCHIG00000001618PUF608794.084Capra_hircus
ENSXETG00000012469puf609994.084ENSTSYG00000011912PUF6010094.767Carlito_syrichta
ENSXETG00000012469puf609989.205ENSCPOG00000014613PUF609489.173Cavia_porcellus
ENSXETG00000012469puf609994.246ENSCCAG00000007744PUF609993.182Cebus_capucinus
ENSXETG00000012469puf609994.246ENSCATG00000035405PUF609993.182Cercocebus_atys
ENSXETG00000012469puf609994.841ENSCLAG00000009154PUF609394.466Chinchilla_lanigera
ENSXETG00000012469puf609794.380ENSCSAG00000008878PUF6010094.380Chlorocebus_sabaeus
ENSXETG00000012469puf609895.385ENSCPBG00000005595PUF609994.129Chrysemys_picta_bellii
ENSXETG00000012469puf609950.287ENSCING00000008436-9850.191Ciona_intestinalis
ENSXETG00000012469puf606361.890ENSCING00000002156-8861.890Ciona_intestinalis
ENSXETG00000012469puf609556.023ENSCSAVG00000001385-9955.725Ciona_savignyi
ENSXETG00000012469puf609650.308ENSCSAVG00000004765-9751.639Ciona_savignyi
ENSXETG00000012469puf608093.827ENSCANG00000041843PUF6010094.005Colobus_angolensis_palliatus
ENSXETG00000012469puf609994.632ENSCGRG00001017442Puf609394.084Cricetulus_griseus_chok1gshd
ENSXETG00000012469puf609994.084ENSCGRG00000003717Puf609394.084Cricetulus_griseus_crigri
ENSXETG00000012469puf609874.506ENSCSEG00000014845-8976.087Cynoglossus_semilaevis
ENSXETG00000012469puf609884.000ENSCSEG00000019887puf60b9283.238Cynoglossus_semilaevis
ENSXETG00000012469puf609882.143ENSCVAG00000009386puf60b10083.493Cyprinodon_variegatus
ENSXETG00000012469puf608880.531ENSCVAG00000001560-9680.430Cyprinodon_variegatus
ENSXETG00000012469puf609877.670ENSDARG00000001241puf60b9992.857Danio_rerio
ENSXETG00000012469puf609785.417ENSDARG00000032175puf60a9991.064Danio_rerio
ENSXETG00000012469puf609680.079ENSDNOG00000043278PUF609080.079Dasypus_novemcinctus
ENSXETG00000012469puf609994.841ENSDORG00000004585Puf609594.466Dipodomys_ordii
ENSXETG00000012469puf609652.305FBgn0028577hfp9951.927Drosophila_melanogaster
ENSXETG00000012469puf609863.130ENSEBUG00000014291puf60b8465.729Eptatretus_burgeri
ENSXETG00000012469puf609672.690ENSEBUG00000005470-8971.951Eptatretus_burgeri
ENSXETG00000012469puf609994.831ENSEASG00005009695PUF609993.561Equus_asinus_asinus
ENSXETG00000012469puf609994.643ENSECAG00000024681PUF609893.524Equus_caballus
ENSXETG00000012469puf6010081.086ENSELUG00000006507puf60b9979.670Esox_lucius
ENSXETG00000012469puf609885.404ENSELUG00000018443-9985.207Esox_lucius
ENSXETG00000012469puf609994.444ENSFCAG00000001045PUF6010094.574Felis_catus
ENSXETG00000012469puf609982.409ENSFALG00000001136PUF609983.588Ficedula_albicollis
ENSXETG00000012469puf609994.444ENSFDAG00000017177PUF609394.084Fukomys_damarensis
ENSXETG00000012469puf609882.540ENSFHEG00000020046puf60b10083.877Fundulus_heteroclitus
ENSXETG00000012469puf609378.916ENSFHEG00000021687PUF6010079.755Fundulus_heteroclitus
ENSXETG00000012469puf609970.736ENSGMOG00000006392puf60b9970.189Gadus_morhua
ENSXETG00000012469puf606595.058ENSGALG00000039901PUF609495.058Gallus_gallus
ENSXETG00000012469puf609882.286ENSGAFG00000021040puf60b10083.877Gambusia_affinis
ENSXETG00000012469puf609878.443ENSGAFG00000004334-9978.367Gambusia_affinis
ENSXETG00000012469puf609868.966ENSGACG00000001484-10068.992Gasterosteus_aculeatus
ENSXETG00000012469puf6010071.136ENSGACG00000004717puf60b10070.093Gasterosteus_aculeatus
ENSXETG00000012469puf609995.427ENSGAGG00000013289PUF609394.129Gopherus_agassizii
ENSXETG00000012469puf609994.246ENSGGOG00000004646PUF609894.242Gorilla_gorilla
ENSXETG00000012469puf609883.135ENSHBUG00000015118puf60b10083.301Haplochromis_burtoni
ENSXETG00000012469puf609881.151ENSHBUG00000009634-10081.151Haplochromis_burtoni
ENSXETG00000012469puf609994.444ENSHGLG00000006111PUF609394.084Heterocephalus_glaber_female
ENSXETG00000012469puf609994.444ENSHGLG00100012362PUF609394.084Heterocephalus_glaber_male
ENSXETG00000012469puf609979.048ENSHCOG00000015541puf60b10080.258Hippocampus_comes
ENSXETG00000012469puf609666.405ENSHCOG00000000378-9964.474Hippocampus_comes
ENSXETG00000012469puf609979.961ENSIPUG00000002453puf60a9980.354Ictalurus_punctatus
ENSXETG00000012469puf609878.571ENSIPUG00000004660puf60b9978.977Ictalurus_punctatus
ENSXETG00000012469puf609994.466ENSSTOG00000025037PUF609494.466Ictidomys_tridecemlineatus
ENSXETG00000012469puf609994.643ENSJJAG00000001076Puf609394.275Jaculus_jaculus
ENSXETG00000012469puf609782.917ENSKMAG00000016745puf60b10083.877Kryptolebias_marmoratus
ENSXETG00000012469puf609776.560ENSKMAG00000010106-10074.254Kryptolebias_marmoratus
ENSXETG00000012469puf609983.117ENSLBEG00000012505puf60b10083.117Labrus_bergylta
ENSXETG00000012469puf607289.617ENSLACG00000005456PUF6010089.344Latimeria_chalumnae
ENSXETG00000012469puf609889.484ENSLOCG00000010106puf60b9889.675Lepisosteus_oculatus
ENSXETG00000012469puf609993.321ENSLAFG00000022929PUF609493.321Loxodonta_africana
ENSXETG00000012469puf609994.246ENSMFAG00000043373PUF609894.242Macaca_fascicularis
ENSXETG00000012469puf609994.246ENSMMUG00000013558PUF609894.242Macaca_mulatta
ENSXETG00000012469puf609994.246ENSMNEG00000031099PUF609993.182Macaca_nemestrina
ENSXETG00000012469puf609894.389ENSMLEG00000040009PUF6010094.389Mandrillus_leucophaeus
ENSXETG00000012469puf609983.208ENSMAMG00000010394puf60b10082.430Mastacembelus_armatus
ENSXETG00000012469puf609781.382ENSMAMG00000019476-9881.574Mastacembelus_armatus
ENSXETG00000012469puf609780.998ENSMZEG00005019425-9880.998Maylandia_zebra
ENSXETG00000012469puf609883.135ENSMZEG00005018515puf60b10083.301Maylandia_zebra
ENSXETG00000012469puf609894.423ENSMGAG00000013070PUF609894.423Meleagris_gallopavo
ENSXETG00000012469puf609479.253ENSMAUG00000018549-9579.253Mesocricetus_auratus
ENSXETG00000012469puf606994.565ENSMAUG00000014267-9094.565Mesocricetus_auratus
ENSXETG00000012469puf609994.275ENSMICG00000012226PUF609994.808Microcebus_murinus
ENSXETG00000012469puf609994.831ENSMOCG00000018780Puf609494.275Microtus_ochrogaster
ENSXETG00000012469puf609875.400ENSMMOG00000018059-9976.484Mola_mola
ENSXETG00000012469puf609784.895ENSMMOG00000004217puf60b10084.704Mola_mola
ENSXETG00000012469puf609994.841ENSMODG00000009161PUF609593.893Monodelphis_domestica
ENSXETG00000012469puf609780.614ENSMALG00000000200-9879.008Monopterus_albus
ENSXETG00000012469puf609876.381ENSMALG00000006797puf60b9876.000Monopterus_albus
ENSXETG00000012469puf609994.246MGP_CAROLIEiJ_G0019910Puf609393.893Mus_caroli
ENSXETG00000012469puf609994.246ENSMUSG00000002524Puf609393.893Mus_musculus
ENSXETG00000012469puf609994.246MGP_PahariEiJ_G0019920Puf609393.893Mus_pahari
ENSXETG00000012469puf609994.246MGP_SPRETEiJ_G0020812Puf609393.893Mus_spretus
ENSXETG00000012469puf609994.084ENSMPUG00000008137PUF609394.084Mustela_putorius_furo
ENSXETG00000012469puf609990.909ENSMLUG00000013032-9990.909Myotis_lucifugus
ENSXETG00000012469puf609993.511ENSMLUG00000000238-9493.511Myotis_lucifugus
ENSXETG00000012469puf609994.643ENSNGAG00000000712Puf6010094.767Nannospalax_galili
ENSXETG00000012469puf609781.154ENSNBRG00000017223-9881.154Neolamprologus_brichardi
ENSXETG00000012469puf608180.045ENSNBRG00000013047puf60b9781.647Neolamprologus_brichardi
ENSXETG00000012469puf609994.246ENSNLEG00000002156PUF609994.071Nomascus_leucogenys
ENSXETG00000012469puf607396.587ENSOPRG00000002147PUF607596.587Ochotona_princeps
ENSXETG00000012469puf6072100.000ENSODEG00000014024-90100.000Octodon_degus
ENSXETG00000012469puf609570.217ENSODEG00000015513-9668.859Octodon_degus
ENSXETG00000012469puf609882.857ENSONIG00000006247puf60b9882.667Oreochromis_niloticus
ENSXETG00000012469puf609880.725ENSONIG00000014030-9781.190Oreochromis_niloticus
ENSXETG00000012469puf609674.902ENSOANG00000006962PUF609875.098Ornithorhynchus_anatinus
ENSXETG00000012469puf609983.465ENSORLG00000012279puf60b10083.685Oryzias_latipes
ENSXETG00000012469puf609777.841ENSORLG00000028655-9977.186Oryzias_latipes
ENSXETG00000012469puf609883.810ENSORLG00020007333puf6010083.685Oryzias_latipes_hni
ENSXETG00000012469puf609877.989ENSORLG00020018144-9877.333Oryzias_latipes_hni
ENSXETG00000012469puf609882.922ENSORLG00015007718puf60b10083.556Oryzias_latipes_hsok
ENSXETG00000012469puf609877.989ENSORLG00015016833-9877.333Oryzias_latipes_hsok
ENSXETG00000012469puf609979.093ENSOMEG00000022185-9778.887Oryzias_melastigma
ENSXETG00000012469puf609881.530ENSOMEG00000001643puf60b9982.828Oryzias_melastigma
ENSXETG00000012469puf609994.466ENSOGAG00000006259PUF609494.466Otolemur_garnettii
ENSXETG00000012469puf609891.923ENSOARG00000016235PUF609891.923Ovis_aries
ENSXETG00000012469puf609994.246ENSPPAG00000029933PUF609894.242Pan_paniscus
ENSXETG00000012469puf609994.084ENSPPRG00000003257PUF6010094.589Panthera_pardus
ENSXETG00000012469puf609994.246ENSPTIG00000009795PUF609992.115Panthera_tigris_altaica
ENSXETG00000012469puf609994.444ENSPTRG00000043963-9894.434Pan_troglodytes
ENSXETG00000012469puf609994.444ENSPTRG00000020670PUF609894.434Pan_troglodytes
ENSXETG00000012469puf609994.246ENSPANG00000021936PUF609993.182Papio_anubis
ENSXETG00000012469puf609985.098ENSPKIG00000004295puf60a9990.588Paramormyrops_kingsleyae
ENSXETG00000012469puf609986.931ENSPKIG00000012204puf60b10087.500Paramormyrops_kingsleyae
ENSXETG00000012469puf609894.615ENSPSIG00000004679PUF609994.434Pelodiscus_sinensis
ENSXETG00000012469puf609782.443ENSPMGG00000013444puf60b9982.824Periophthalmus_magnuspinnatus
ENSXETG00000012469puf609994.831ENSPEMG00000008820Puf609394.275Peromyscus_maniculatus_bairdii
ENSXETG00000012469puf609995.030ENSPCIG00000020270PUF609995.000Phascolarctos_cinereus
ENSXETG00000012469puf609779.537ENSPFOG00000011118-9779.923Poecilia_formosa
ENSXETG00000012469puf609981.890ENSPFOG00000019217puf60b9982.874Poecilia_formosa
ENSXETG00000012469puf609882.540ENSPLAG00000010754puf60b10083.877Poecilia_latipinna
ENSXETG00000012469puf609779.730ENSPLAG00000017025-9079.730Poecilia_latipinna
ENSXETG00000012469puf609882.540ENSPMEG00000000838puf60b10083.877Poecilia_mexicana
ENSXETG00000012469puf609779.151ENSPMEG00000009767-9079.730Poecilia_mexicana
ENSXETG00000012469puf609880.952ENSPREG00000005440puf60b10081.944Poecilia_reticulata
ENSXETG00000012469puf607992.566ENSPPYG00000018951-9592.566Pongo_abelii
ENSXETG00000012469puf607994.484ENSPCAG00000014837PUF6010094.484Procavia_capensis
ENSXETG00000012469puf609994.831ENSPCOG00000027981PUF609994.808Propithecus_coquereli
ENSXETG00000012469puf609796.835ENSPVAG00000016167PUF608196.835Pteropus_vampyrus
ENSXETG00000012469puf609780.998ENSPNYG00000004273-9880.998Pundamilia_nyererei
ENSXETG00000012469puf609783.493ENSPNYG00000002556puf60b10083.301Pundamilia_nyererei
ENSXETG00000012469puf609983.074ENSPNAG00000019909puf60a10082.879Pygocentrus_nattereri
ENSXETG00000012469puf609979.882ENSPNAG00000019415puf60b9077.075Pygocentrus_nattereri
ENSXETG00000012469puf609994.246ENSRNOG00000009960Puf609393.893Rattus_norvegicus
ENSXETG00000012469puf609994.246ENSRBIG00000035274PUF609894.242Rhinopithecus_bieti
ENSXETG00000012469puf609994.246ENSRROG00000029360PUF609994.073Rhinopithecus_roxellana
ENSXETG00000012469puf609993.241ENSSBOG00000027089PUF609892.734Saimiri_boliviensis_boliviensis
ENSXETG00000012469puf608993.432ENSSHAG00000006668PUF609193.432Sarcophilus_harrisii
ENSXETG00000012469puf609386.519ENSSFOG00015019371puf60a9886.922Scleropages_formosus
ENSXETG00000012469puf609880.906ENSSFOG00015019619puf60b9985.425Scleropages_formosus
ENSXETG00000012469puf607290.391ENSSMAG00000016381puf60b7390.391Scophthalmus_maximus
ENSXETG00000012469puf609780.116ENSSDUG00000007048-9779.537Seriola_dumerili
ENSXETG00000012469puf609881.903ENSSDUG00000009935puf60b9982.828Seriola_dumerili
ENSXETG00000012469puf609879.310ENSSLDG00000007366-9979.127Seriola_lalandi_dorsalis
ENSXETG00000012469puf609883.969ENSSLDG00000024011puf60b10081.869Seriola_lalandi_dorsalis
ENSXETG00000012469puf606484.848ENSSPUG00000013518PUF609284.848Sphenodon_punctatus
ENSXETG00000012469puf609780.534ENSSPAG00000020285-10081.107Stegastes_partitus
ENSXETG00000012469puf609980.806ENSSPAG00000012144puf60b10082.056Stegastes_partitus
ENSXETG00000012469puf609994.048ENSSSCG00000038800PUF609993.874Sus_scrofa
ENSXETG00000012469puf609891.954ENSTGUG00000012797-9991.954Taeniopygia_guttata
ENSXETG00000012469puf609883.429ENSTRUG00000005420puf60b10081.869Takifugu_rubripes
ENSXETG00000012469puf609878.557ENSTRUG00000008843-10078.758Takifugu_rubripes
ENSXETG00000012469puf609876.879ENSTNIG00000003069-9976.879Tetraodon_nigroviridis
ENSXETG00000012469puf609883.238ENSTNIG00000013675puf60b9983.429Tetraodon_nigroviridis
ENSXETG00000012469puf607576.012ENSTBEG00000001899-10077.168Tupaia_belangeri
ENSXETG00000012469puf605892.881ENSTBEG00000002751-9893.197Tupaia_belangeri
ENSXETG00000012469puf609793.411ENSTTRG00000017088PUF6010093.605Tursiops_truncatus
ENSXETG00000012469puf609994.831ENSUAMG00000024917PUF609993.561Ursus_americanus
ENSXETG00000012469puf609989.313ENSUMAG00000000272PUF609489.122Ursus_maritimus
ENSXETG00000012469puf609994.831ENSVVUG00000022527PUF6010094.767Vulpes_vulpes
ENSXETG00000012469puf609882.540ENSXCOG00000012355puf60b10083.532Xiphophorus_couchianus
ENSXETG00000012469puf609879.641ENSXMAG00000010507-9879.242Xiphophorus_maculatus
ENSXETG00000012469puf609981.890ENSXMAG00000001862puf60b10083.877Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us