EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000012528 (Gene tree)
Gene ID: -
Gene Symbol: smg7
Alias: -
Full Name: Xenopus tropicalis SMG7 nonsense mediated mRNA decay factor (smg7)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 27700 bases
Position: chrGL172923.1:634239-661938
Accession: NM_203927
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000027408	EST1	PF10374.9	1.1e-24	1	1
ENSXETP00000059228	EST1	PF10374.9	1.1e-24	1	1
ENSXETP00000027408	EST1_DNA_bind	PF10373.9	1.2e-48	1	1
ENSXETP00000059228	EST1_DNA_bind	PF10373.9	1.2e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000027408	-	3618	-	ENSXETP00000027408	1142 (aa)	-	Q6P3P9
ENSXETT00000063669	-	3456	-	ENSXETP00000059228	1143 (aa)	-	F6TWP2

Gene Model

Click here to download ENSXETG00000012528's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000012528's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000012528	smg7	100	70.859	ENSG00000116698	SMG7	89	91.463	Homo_sapiens
ENSXETG00000012528	smg7	83	69.104	ENSAPOG00000009611	smg7	95	68.460	Acanthochromis_polyacanthus
ENSXETG00000012528	smg7	99	71.117	ENSAMEG00000002357	SMG7	99	71.156	Ailuropoda_melanoleuca
ENSXETG00000012528	smg7	99	59.983	ENSAOCG00000013538	smg7	99	60.102	Amphiprion_ocellaris
ENSXETG00000012528	smg7	99	60.102	ENSAPEG00000007851	smg7	99	60.136	Amphiprion_percula
ENSXETG00000012528	smg7	100	59.122	ENSATEG00000006931	smg7	99	59.815	Anabas_testudineus
ENSXETG00000012528	smg7	99	70.993	ENSAPLG00000015811	SMG7	99	71.080	Anas_platyrhynchos
ENSXETG00000012528	smg7	100	67.271	ENSACAG00000014989	SMG7	100	67.632	Anolis_carolinensis
ENSXETG00000012528	smg7	100	71.119	ENSANAG00000028114	SMG7	84	92.258	Aotus_nancymaae
ENSXETG00000012528	smg7	99	60.611	ENSACLG00000022079	smg7	99	60.627	Astatotilapia_calliptera
ENSXETG00000012528	smg7	99	60.585	ENSAMXG00000020809	smg7	99	61.565	Astyanax_mexicanus
ENSXETG00000012528	smg7	100	70.598	ENSBTAG00000008003	SMG7	100	70.837	Bos_taurus
ENSXETG00000012528	smg7	100	71.057	ENSCJAG00000005135	SMG7	89	88.889	Callithrix_jacchus
ENSXETG00000012528	smg7	99	66.750	ENSCAFG00000013276	SMG7	97	66.389	Canis_familiaris
ENSXETG00000012528	smg7	99	71.316	ENSCAFG00020015475	SMG7	86	90.506	Canis_lupus_dingo
ENSXETG00000012528	smg7	99	65.941	ENSCHIG00000018192	SMG7	99	65.698	Capra_hircus
ENSXETG00000012528	smg7	100	70.859	ENSTSYG00000002667	SMG7	80	92.258	Carlito_syrichta
ENSXETG00000012528	smg7	99	66.164	ENSCPOG00000008906	SMG7	99	65.968	Cavia_porcellus
ENSXETG00000012528	smg7	100	71.032	ENSCCAG00000028596	SMG7	84	92.258	Cebus_capucinus
ENSXETG00000012528	smg7	100	71.206	ENSCATG00000011063	SMG7	84	92.258	Cercocebus_atys
ENSXETG00000012528	smg7	100	70.884	ENSCLAG00000010751	SMG7	100	70.996	Chinchilla_lanigera
ENSXETG00000012528	smg7	99	66.415	ENSCSAG00000012654	SMG7	97	66.444	Chlorocebus_sabaeus
ENSXETG00000012528	smg7	92	62.579	ENSCHOG00000010522	SMG7	93	62.399	Choloepus_hoffmanni
ENSXETG00000012528	smg7	100	71.379	ENSCPBG00000015724	SMG7	100	71.466	Chrysemys_picta_bellii
ENSXETG00000012528	smg7	99	71.179	ENSCANG00000015680	SMG7	84	92.258	Colobus_angolensis_palliatus
ENSXETG00000012528	smg7	100	70.078	ENSCGRG00001013705	Smg7	100	69.845	Cricetulus_griseus_chok1gshd
ENSXETG00000012528	smg7	99	70.017	ENSCGRG00000018401	Smg7	100	69.784	Cricetulus_griseus_crigri
ENSXETG00000012528	smg7	99	59.744	ENSCVAG00000011842	smg7	100	59.607	Cyprinodon_variegatus
ENSXETG00000012528	smg7	99	61.387	ENSDARG00000060767	smg7	99	61.664	Danio_rerio
ENSXETG00000012528	smg7	100	66.085	ENSDORG00000007331	Smg7	100	65.835	Dipodomys_ordii
ENSXETG00000012528	smg7	97	65.866	ENSETEG00000002654	SMG7	100	65.609	Echinops_telfairi
ENSXETG00000012528	smg7	100	66.500	ENSEASG00005006524	SMG7	100	66.417	Equus_asinus_asinus
ENSXETG00000012528	smg7	99	69.345	ENSECAG00000004313	SMG7	97	69.520	Equus_caballus
ENSXETG00000012528	smg7	97	65.009	ENSEEUG00000002024	SMG7	94	64.867	Erinaceus_europaeus
ENSXETG00000012528	smg7	99	59.415	ENSELUG00000010293	smg7	99	60.609	Esox_lucius
ENSXETG00000012528	smg7	99	69.930	ENSFCAG00000010900	SMG7	100	68.166	Felis_catus
ENSXETG00000012528	smg7	99	65.767	ENSFALG00000003047	SMG7	100	66.049	Ficedula_albicollis
ENSXETG00000012528	smg7	99	66.275	ENSFDAG00000012121	SMG7	99	65.878	Fukomys_damarensis
ENSXETG00000012528	smg7	99	59.372	ENSFHEG00000011073	smg7	99	59.645	Fundulus_heteroclitus
ENSXETG00000012528	smg7	73	70.489	ENSGMOG00000004916	smg7	77	70.489	Gadus_morhua
ENSXETG00000012528	smg7	100	70.700	ENSGALG00000004667	SMG7	100	71.478	Gallus_gallus
ENSXETG00000012528	smg7	99	59.746	ENSGAFG00000019000	smg7	99	59.645	Gambusia_affinis
ENSXETG00000012528	smg7	97	59.155	ENSGACG00000001634	smg7	99	59.127	Gasterosteus_aculeatus
ENSXETG00000012528	smg7	100	71.119	ENSGGOG00000002342	SMG7	83	89.506	Gorilla_gorilla
ENSXETG00000012528	smg7	99	59.587	ENSHBUG00000003726	smg7	99	59.670	Haplochromis_burtoni
ENSXETG00000012528	smg7	100	70.945	ENSHGLG00000009353	SMG7	100	71.169	Heterocephalus_glaber_female
ENSXETG00000012528	smg7	100	60.017	ENSHGLG00100004878	-	100	59.884	Heterocephalus_glaber_male
ENSXETG00000012528	smg7	100	70.945	ENSHGLG00100009637	-	100	71.169	Heterocephalus_glaber_male
ENSXETG00000012528	smg7	99	61.711	ENSIPUG00000016997	smg7	99	61.744	Ictalurus_punctatus
ENSXETG00000012528	smg7	100	69.531	ENSSTOG00000000401	SMG7	100	69.384	Ictidomys_tridecemlineatus
ENSXETG00000012528	smg7	100	65.557	ENSJJAG00000012351	Smg7	100	65.420	Jaculus_jaculus
ENSXETG00000012528	smg7	97	56.514	ENSKMAG00000004900	smg7	100	56.342	Kryptolebias_marmoratus
ENSXETG00000012528	smg7	99	58.990	ENSLBEG00000002983	smg7	99	59.380	Labrus_bergylta
ENSXETG00000012528	smg7	52	58.638	ENSLBEG00000005220	-	75	57.616	Labrus_bergylta
ENSXETG00000012528	smg7	100	65.073	ENSLACG00000000972	SMG7	100	65.585	Latimeria_chalumnae
ENSXETG00000012528	smg7	99	59.226	ENSLOCG00000002010	smg7	99	59.027	Lepisosteus_oculatus
ENSXETG00000012528	smg7	99	66.918	ENSLAFG00000008186	SMG7	99	66.667	Loxodonta_africana
ENSXETG00000012528	smg7	99	69.318	ENSMFAG00000031653	SMG7	84	92.258	Macaca_fascicularis
ENSXETG00000012528	smg7	99	70.640	ENSMMUG00000018458	SMG7	99	70.665	Macaca_mulatta
ENSXETG00000012528	smg7	100	71.206	ENSMNEG00000034798	SMG7	84	92.258	Macaca_nemestrina
ENSXETG00000012528	smg7	100	71.206	ENSMLEG00000037170	SMG7	100	71.231	Mandrillus_leucophaeus
ENSXETG00000012528	smg7	87	59.113	ENSMAMG00000018733	smg7	85	59.302	Mastacembelus_armatus
ENSXETG00000012528	smg7	99	61.154	ENSMZEG00005015247	smg7	99	60.745	Maylandia_zebra
ENSXETG00000012528	smg7	98	70.053	ENSMGAG00000001561	SMG7	99	71.004	Meleagris_gallopavo
ENSXETG00000012528	smg7	100	69.991	ENSMAUG00000019484	Smg7	100	70.156	Mesocricetus_auratus
ENSXETG00000012528	smg7	100	71.986	ENSMICG00000007145	SMG7	81	92.258	Microcebus_murinus
ENSXETG00000012528	smg7	100	69.922	ENSMOCG00000020748	Smg7	100	69.922	Microtus_ochrogaster
ENSXETG00000012528	smg7	99	59.130	ENSMMOG00000001524	smg7	99	59.434	Mola_mola
ENSXETG00000012528	smg7	91	71.780	ENSMODG00000007139	SMG7	99	71.686	Monodelphis_domestica
ENSXETG00000012528	smg7	99	58.863	ENSMALG00000000061	smg7	93	59.423	Monopterus_albus
ENSXETG00000012528	smg7	100	70.121	MGP_CAROLIEiJ_G0014704	Smg7	100	70.069	Mus_caroli
ENSXETG00000012528	smg7	100	70.009	ENSMUSG00000042772	Smg7	100	70.345	Mus_musculus
ENSXETG00000012528	smg7	100	69.896	MGP_PahariEiJ_G0027940	Smg7	100	70.182	Mus_pahari
ENSXETG00000012528	smg7	100	69.922	MGP_SPRETEiJ_G0015511	Smg7	100	70.259	Mus_spretus
ENSXETG00000012528	smg7	98	66.695	ENSMPUG00000011732	SMG7	97	66.498	Mustela_putorius_furo
ENSXETG00000012528	smg7	100	65.503	ENSMLUG00000015417	SMG7	100	65.480	Myotis_lucifugus
ENSXETG00000012528	smg7	100	70.338	ENSNGAG00000009836	Smg7	100	70.675	Nannospalax_galili
ENSXETG00000012528	smg7	98	56.981	ENSNBRG00000024343	smg7	99	56.733	Neolamprologus_brichardi
ENSXETG00000012528	smg7	100	71.032	ENSNLEG00000018018	SMG7	100	71.057	Nomascus_leucogenys
ENSXETG00000012528	smg7	69	64.773	ENSMEUG00000004681	SMG7	73	64.773	Notamacropus_eugenii
ENSXETG00000012528	smg7	96	61.472	ENSOPRG00000013942	SMG7	96	61.212	Ochotona_princeps
ENSXETG00000012528	smg7	100	70.859	ENSODEG00000010390	SMG7	100	70.884	Octodon_degus
ENSXETG00000012528	smg7	99	60.406	ENSONIG00000000277	smg7	99	60.338	Oreochromis_niloticus
ENSXETG00000012528	smg7	99	65.657	ENSOANG00000000994	SMG7	100	65.880	Ornithorhynchus_anatinus
ENSXETG00000012528	smg7	99	62.929	ENSOCUG00000005887	SMG7	93	63.940	Oryctolagus_cuniculus
ENSXETG00000012528	smg7	99	59.351	ENSORLG00000007314	smg7	70	89.474	Oryzias_latipes
ENSXETG00000012528	smg7	99	59.607	ENSORLG00020015779	smg7	70	89.474	Oryzias_latipes_hni
ENSXETG00000012528	smg7	99	59.351	ENSORLG00015012289	smg7	99	59.436	Oryzias_latipes_hsok
ENSXETG00000012528	smg7	99	56.976	ENSOMEG00000002328	smg7	99	57.657	Oryzias_melastigma
ENSXETG00000012528	smg7	97	66.065	ENSOGAG00000003107	SMG7	94	65.923	Otolemur_garnettii
ENSXETG00000012528	smg7	99	68.546	ENSOARG00000001352	SMG7	100	68.269	Ovis_aries
ENSXETG00000012528	smg7	100	71.032	ENSPPAG00000031619	SMG7	88	89.506	Pan_paniscus
ENSXETG00000012528	smg7	100	71.639	ENSPPRG00000011222	SMG7	100	71.675	Panthera_pardus
ENSXETG00000012528	smg7	96	68.045	ENSPTIG00000007242	SMG7	100	68.096	Panthera_tigris_altaica
ENSXETG00000012528	smg7	100	71.032	ENSPTRG00000001764	SMG7	84	92.258	Pan_troglodytes
ENSXETG00000012528	smg7	100	71.206	ENSPANG00000004520	SMG7	100	71.231	Papio_anubis
ENSXETG00000012528	smg7	99	59.790	ENSPKIG00000007242	smg7	99	59.582	Paramormyrops_kingsleyae
ENSXETG00000012528	smg7	99	69.774	ENSPSIG00000012201	SMG7	100	69.729	Pelodiscus_sinensis
ENSXETG00000012528	smg7	72	39.405	ENSPMGG00000021833	smg7	98	40.309	Periophthalmus_magnuspinnatus
ENSXETG00000012528	smg7	99	68.794	ENSPEMG00000011315	Smg7	99	68.668	Peromyscus_maniculatus_bairdii
ENSXETG00000012528	smg7	100	71.453	ENSPCIG00000003786	SMG7	92	91.515	Phascolarctos_cinereus
ENSXETG00000012528	smg7	99	57.749	ENSPFOG00000019219	smg7	99	57.561	Poecilia_formosa
ENSXETG00000012528	smg7	99	59.898	ENSPLAG00000001446	smg7	99	59.696	Poecilia_latipinna
ENSXETG00000012528	smg7	97	59.111	ENSPMEG00000005218	smg7	99	59.269	Poecilia_mexicana
ENSXETG00000012528	smg7	87	58.537	ENSPREG00000019039	smg7	91	58.927	Poecilia_reticulata
ENSXETG00000012528	smg7	100	71.032	ENSPPYG00000000427	SMG7	100	71.057	Pongo_abelii
ENSXETG00000012528	smg7	83	74.286	ENSPCAG00000008360	SMG7	86	74.286	Procavia_capensis
ENSXETG00000012528	smg7	100	70.052	ENSPCOG00000011996	SMG7	100	69.792	Propithecus_coquereli
ENSXETG00000012528	smg7	91	61.293	ENSPVAG00000000851	SMG7	89	61.469	Pteropus_vampyrus
ENSXETG00000012528	smg7	99	60.663	ENSPNYG00000007643	smg7	99	60.578	Pundamilia_nyererei
ENSXETG00000012528	smg7	99	61.440	ENSPNAG00000011374	smg7	99	61.750	Pygocentrus_nattereri
ENSXETG00000012528	smg7	100	69.922	ENSRNOG00000027962	Smg7	100	70.207	Rattus_norvegicus
ENSXETG00000012528	smg7	100	71.119	ENSRBIG00000036316	SMG7	100	71.144	Rhinopithecus_bieti
ENSXETG00000012528	smg7	100	71.119	ENSRROG00000035719	SMG7	100	71.144	Rhinopithecus_roxellana
ENSXETG00000012528	smg7	100	69.384	ENSSBOG00000023454	SMG7	89	91.463	Saimiri_boliviensis_boliviensis
ENSXETG00000012528	smg7	99	71.404	ENSSHAG00000013147	SMG7	99	71.192	Sarcophilus_harrisii
ENSXETG00000012528	smg7	99	62.640	ENSSFOG00015017252	smg7	99	62.985	Scleropages_formosus
ENSXETG00000012528	smg7	99	59.297	ENSSMAG00000006067	smg7	99	59.830	Scophthalmus_maximus
ENSXETG00000012528	smg7	100	59.025	ENSSDUG00000017543	smg7	100	59.250	Seriola_dumerili
ENSXETG00000012528	smg7	99	70.833	ENSSPUG00000002064	SMG7	99	70.833	Sphenodon_punctatus
ENSXETG00000012528	smg7	99	60.847	ENSSPAG00000008733	smg7	99	60.727	Stegastes_partitus
ENSXETG00000012528	smg7	100	69.037	ENSSSCG00000015558	SMG7	100	68.739	Sus_scrofa
ENSXETG00000012528	smg7	99	70.026	ENSTGUG00000003928	SMG7	100	70.783	Taeniopygia_guttata
ENSXETG00000012528	smg7	99	54.766	ENSTNIG00000002802	smg7	99	54.919	Tetraodon_nigroviridis
ENSXETG00000012528	smg7	78	69.524	ENSTBEG00000003220	SMG7	72	69.524	Tupaia_belangeri
ENSXETG00000012528	smg7	96	65.341	ENSTTRG00000014778	SMG7	94	65.060	Tursiops_truncatus
ENSXETG00000012528	smg7	96	69.037	ENSUAMG00000017473	SMG7	100	68.817	Ursus_americanus
ENSXETG00000012528	smg7	96	69.037	ENSUMAG00000016389	SMG7	100	68.817	Ursus_maritimus
ENSXETG00000012528	smg7	100	69.618	ENSVVUG00000008976	SMG7	100	69.404	Vulpes_vulpes
ENSXETG00000012528	smg7	99	59.610	ENSXMAG00000007123	smg7	99	59.594	Xiphophorus_maculatus