EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000012802 (Gene tree)
Gene ID: -
Gene Symbol: rbm47
Alias: -
Full Name: Xenopus tropicalis RNA binding motif protein 47 (rbm47)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 12810 bases
Position: chrGL172695.1:2603740-2616549
Accession: NM_001142027
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000027967	RRM_1	PF00076.22	4e-38	1	3
ENSXETP00000027967	RRM_1	PF00076.22	4e-38	2	3
ENSXETP00000027967	RRM_1	PF00076.22	4e-38	3	3
ENSXETP00000027965	RRM_1	PF00076.22	1.6e-37	1	3
ENSXETP00000027965	RRM_1	PF00076.22	1.6e-37	2	3
ENSXETP00000027965	RRM_1	PF00076.22	1.6e-37	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000027965	-	1773	-	ENSXETP00000027965	590 (aa)	-	F6VW68
ENSXETT00000027967	-	1573	-	ENSXETP00000027967	412 (aa)	-	B4F6J4

Gene Model

Click here to download ENSXETG00000012802's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000012802's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000012802	rbm47	79	52.711	ENSXETG00000007102	hnrnpr	80	46.172
ENSXETG00000012802	rbm47	86	59.444	ENSXETG00000006611	a1cf	76	52.463
ENSXETG00000012802	rbm47	50	42.439	ENSXETG00000016114	dnd1	54	42.439
ENSXETG00000012802	rbm47	73	60.201	ENSXETG00000032067	-	80	62.542
ENSXETG00000012802	rbm47	72	55.482	ENSXETG00000018075	syncrip	62	48.872
ENSXETG00000012802	rbm47	72	69.153	ENSXETG00000022412	-	55	69.153
ENSXETG00000012802	rbm47	72	45.033	ENSXETG00000032344	-	56	45.183

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000012802	rbm47	100	84.590	ENSG00000163694	RBM47	100	88.018	Homo_sapiens
ENSXETG00000012802	rbm47	100	78.203	ENSAPOG00000011062	rbm47	100	81.726	Acanthochromis_polyacanthus
ENSXETG00000012802	rbm47	100	84.925	ENSAMEG00000009672	RBM47	100	85.260	Ailuropoda_melanoleuca
ENSXETG00000012802	rbm47	100	77.000	ENSACIG00000011531	rbm47	100	77.667	Amphilophus_citrinellus
ENSXETG00000012802	rbm47	100	78.130	ENSAOCG00000022245	rbm47	100	81.726	Amphiprion_ocellaris
ENSXETG00000012802	rbm47	100	78.130	ENSAPEG00000018304	rbm47	100	81.726	Amphiprion_percula
ENSXETG00000012802	rbm47	100	76.307	ENSATEG00000018400	rbm47	100	75.980	Anabas_testudineus
ENSXETG00000012802	rbm47	100	84.966	ENSAPLG00000013974	RBM47	100	84.966	Anas_platyrhynchos
ENSXETG00000012802	rbm47	100	84.245	ENSACAG00000011833	RBM47	100	84.080	Anolis_carolinensis
ENSXETG00000012802	rbm47	100	84.590	ENSANAG00000029440	RBM47	100	84.590	Aotus_nancymaae
ENSXETG00000012802	rbm47	100	76.509	ENSACLG00000016902	rbm47	100	83.077	Astatotilapia_calliptera
ENSXETG00000012802	rbm47	100	75.410	ENSAMXG00000021794	rbm47	100	75.246	Astyanax_mexicanus
ENSXETG00000012802	rbm47	100	86.172	ENSBTAG00000002356	RBM47	100	86.172	Bos_taurus
ENSXETG00000012802	rbm47	100	84.654	ENSCJAG00000019385	RBM47	100	84.654	Callithrix_jacchus
ENSXETG00000012802	rbm47	96	86.165	ENSCAFG00000015898	RBM47	100	84.874	Canis_familiaris
ENSXETG00000012802	rbm47	87	87.500	ENSCAFG00020010558	RBM47	94	85.526	Canis_lupus_dingo
ENSXETG00000012802	rbm47	100	86.341	ENSCHIG00000026214	RBM47	100	86.341	Capra_hircus
ENSXETG00000012802	rbm47	86	86.996	ENSTSYG00000033612	RBM47	93	85.841	Carlito_syrichta
ENSXETG00000012802	rbm47	100	78.319	ENSCAPG00000008426	RBM47	100	79.328	Cavia_aperea
ENSXETG00000012802	rbm47	100	84.370	ENSCPOG00000014100	RBM47	100	87.566	Cavia_porcellus
ENSXETG00000012802	rbm47	100	84.992	ENSCCAG00000030129	-	100	84.992	Cebus_capucinus
ENSXETG00000012802	rbm47	99	58.784	ENSCCAG00000024397	-	99	59.291	Cebus_capucinus
ENSXETG00000012802	rbm47	100	84.823	ENSCATG00000042064	RBM47	100	85.329	Cercocebus_atys
ENSXETG00000012802	rbm47	100	84.512	ENSCLAG00000001684	RBM47	100	87.831	Chinchilla_lanigera
ENSXETG00000012802	rbm47	100	84.757	ENSCSAG00000017060	RBM47	100	85.092	Chlorocebus_sabaeus
ENSXETG00000012802	rbm47	80	88.754	ENSCHOG00000011731	RBM47	88	80.984	Choloepus_hoffmanni
ENSXETG00000012802	rbm47	100	87.646	ENSCPBG00000013831	RBM47	100	87.479	Chrysemys_picta_bellii
ENSXETG00000012802	rbm47	100	85.329	ENSCANG00000019997	RBM47	100	85.329	Colobus_angolensis_palliatus
ENSXETG00000012802	rbm47	100	83.529	ENSCGRG00001000623	-	100	83.529	Cricetulus_griseus_chok1gshd
ENSXETG00000012802	rbm47	92	80.688	ENSCGRG00001020102	-	100	80.526	Cricetulus_griseus_chok1gshd
ENSXETG00000012802	rbm47	92	80.423	ENSCGRG00000014760	-	100	80.263	Cricetulus_griseus_crigri
ENSXETG00000012802	rbm47	100	82.689	ENSCGRG00000007762	-	100	82.689	Cricetulus_griseus_crigri
ENSXETG00000012802	rbm47	100	75.500	ENSCSEG00000004545	rbm47	100	76.578	Cynoglossus_semilaevis
ENSXETG00000012802	rbm47	100	75.879	ENSCVAG00000020144	rbm47	100	80.597	Cyprinodon_variegatus
ENSXETG00000012802	rbm47	100	76.480	ENSDARG00000061985	rbm47	100	76.480	Danio_rerio
ENSXETG00000012802	rbm47	100	84.459	ENSDNOG00000046854	RBM47	100	85.473	Dasypus_novemcinctus
ENSXETG00000012802	rbm47	100	85.427	ENSDORG00000010144	Rbm47	100	85.427	Dipodomys_ordii
ENSXETG00000012802	rbm47	97	86.034	ENSETEG00000009194	RBM47	100	84.899	Echinops_telfairi
ENSXETG00000012802	rbm47	92	70.449	ENSEBUG00000011912	rbm47	100	57.471	Eptatretus_burgeri
ENSXETG00000012802	rbm47	100	85.666	ENSEASG00005008443	RBM47	100	86.172	Equus_asinus_asinus
ENSXETG00000012802	rbm47	100	85.666	ENSECAG00000004400	RBM47	100	86.172	Equus_caballus
ENSXETG00000012802	rbm47	75	87.013	ENSEEUG00000001194	RBM47	75	87.013	Erinaceus_europaeus
ENSXETG00000012802	rbm47	93	83.551	ENSELUG00000006148	rbm47	100	81.864	Esox_lucius
ENSXETG00000012802	rbm47	100	85.666	ENSFCAG00000012399	RBM47	100	86.003	Felis_catus
ENSXETG00000012802	rbm47	100	85.930	ENSFALG00000002861	RBM47	100	85.595	Ficedula_albicollis
ENSXETG00000012802	rbm47	100	83.333	ENSFDAG00000016326	RBM47	100	83.502	Fukomys_damarensis
ENSXETG00000012802	rbm47	100	76.756	ENSFHEG00000007938	rbm47	100	76.254	Fundulus_heteroclitus
ENSXETG00000012802	rbm47	100	73.906	ENSGMOG00000014802	rbm47	100	74.230	Gadus_morhua
ENSXETG00000012802	rbm47	92	89.182	ENSGALG00000014267	RBM47	100	89.182	Gallus_gallus
ENSXETG00000012802	rbm47	93	84.156	ENSGAFG00000020571	rbm47	99	84.156	Gambusia_affinis
ENSXETG00000012802	rbm47	100	73.941	ENSGACG00000016223	rbm47	100	79.442	Gasterosteus_aculeatus
ENSXETG00000012802	rbm47	100	87.646	ENSGAGG00000020051	RBM47	100	87.479	Gopherus_agassizii
ENSXETG00000012802	rbm47	100	84.823	ENSGGOG00000001367	RBM47	100	85.329	Gorilla_gorilla
ENSXETG00000012802	rbm47	100	75.772	ENSHBUG00000003520	rbm47	100	83.077	Haplochromis_burtoni
ENSXETG00000012802	rbm47	84	77.686	ENSHGLG00000016914	RBM47	100	82.911	Heterocephalus_glaber_female
ENSXETG00000012802	rbm47	100	83.615	ENSHGLG00100014028	-	100	84.459	Heterocephalus_glaber_male
ENSXETG00000012802	rbm47	100	76.271	ENSHGLG00100003071	-	100	76.102	Heterocephalus_glaber_male
ENSXETG00000012802	rbm47	99	75.544	ENSHCOG00000002074	rbm47	99	80.964	Hippocampus_comes
ENSXETG00000012802	rbm47	100	77.722	ENSIPUG00000004743	rbm47	100	77.219	Ictalurus_punctatus
ENSXETG00000012802	rbm47	100	83.612	ENSSTOG00000004727	RBM47	100	84.615	Ictidomys_tridecemlineatus
ENSXETG00000012802	rbm47	100	84.925	ENSJJAG00000013823	Rbm47	100	84.925	Jaculus_jaculus
ENSXETG00000012802	rbm47	100	77.295	ENSKMAG00000000084	rbm47	100	81.218	Kryptolebias_marmoratus
ENSXETG00000012802	rbm47	100	76.833	ENSLBEG00000008436	rbm47	100	79.949	Labrus_bergylta
ENSXETG00000012802	rbm47	100	84.925	ENSLACG00000007196	RBM47	100	84.590	Latimeria_chalumnae
ENSXETG00000012802	rbm47	100	81.240	ENSLOCG00000012966	rbm47	95	80.402	Lepisosteus_oculatus
ENSXETG00000012802	rbm47	100	84.590	ENSLAFG00000011998	RBM47	100	84.925	Loxodonta_africana
ENSXETG00000012802	rbm47	100	84.823	ENSMFAG00000037967	RBM47	100	85.329	Macaca_fascicularis
ENSXETG00000012802	rbm47	100	84.757	ENSMMUG00000012036	RBM47	100	86.528	Macaca_mulatta
ENSXETG00000012802	rbm47	100	84.992	ENSMNEG00000040774	RBM47	100	85.497	Macaca_nemestrina
ENSXETG00000012802	rbm47	100	89.206	ENSMLEG00000041432	RBM47	100	89.206	Mandrillus_leucophaeus
ENSXETG00000012802	rbm47	100	76.432	ENSMAMG00000019143	rbm47	100	82.097	Mastacembelus_armatus
ENSXETG00000012802	rbm47	100	76.509	ENSMZEG00005023659	rbm47	99	82.234	Maylandia_zebra
ENSXETG00000012802	rbm47	100	86.167	ENSMGAG00000012226	RBM47	100	85.833	Meleagris_gallopavo
ENSXETG00000012802	rbm47	100	84.007	ENSMAUG00000006493	Rbm47	100	85.714	Mesocricetus_auratus
ENSXETG00000012802	rbm47	100	80.607	ENSMICG00000026417	RBM47	100	83.862	Microcebus_murinus
ENSXETG00000012802	rbm47	100	83.670	ENSMOCG00000021170	Rbm47	100	84.921	Microtus_ochrogaster
ENSXETG00000012802	rbm47	100	76.923	ENSMMOG00000007260	rbm47	100	76.432	Mola_mola
ENSXETG00000012802	rbm47	77	77.259	ENSMODG00000015426	-	100	77.259	Monodelphis_domestica
ENSXETG00000012802	rbm47	100	86.387	ENSMODG00000007003	RBM47	100	86.218	Monodelphis_domestica
ENSXETG00000012802	rbm47	100	78.415	ENSMODG00000020561	-	100	78.752	Monodelphis_domestica
ENSXETG00000012802	rbm47	100	76.333	ENSMALG00000005167	rbm47	100	81.122	Monopterus_albus
ENSXETG00000012802	rbm47	100	83.980	MGP_CAROLIEiJ_G0027258	Rbm47	100	83.980	Mus_caroli
ENSXETG00000012802	rbm47	100	84.317	ENSMUSG00000070780	Rbm47	100	84.317	Mus_musculus
ENSXETG00000012802	rbm47	100	83.980	MGP_PahariEiJ_G0017040	Rbm47	100	83.980	Mus_pahari
ENSXETG00000012802	rbm47	100	84.264	MGP_SPRETEiJ_G0028253	Rbm47	100	85.185	Mus_spretus
ENSXETG00000012802	rbm47	100	86.195	ENSMPUG00000006177	RBM47	94	86.027	Mustela_putorius_furo
ENSXETG00000012802	rbm47	100	85.473	ENSMLUG00000000889	RBM47	100	85.473	Myotis_lucifugus
ENSXETG00000012802	rbm47	100	84.874	ENSNGAG00000003325	Rbm47	100	84.706	Nannospalax_galili
ENSXETG00000012802	rbm47	100	76.221	ENSNBRG00000015092	rbm47	100	76.873	Neolamprologus_brichardi
ENSXETG00000012802	rbm47	100	84.486	ENSNLEG00000017151	RBM47	100	87.566	Nomascus_leucogenys
ENSXETG00000012802	rbm47	88	89.532	ENSMEUG00000009516	-	100	83.333	Notamacropus_eugenii
ENSXETG00000012802	rbm47	75	90.164	ENSOPRG00000016507	-	75	90.164	Ochotona_princeps
ENSXETG00000012802	rbm47	100	84.007	ENSODEG00000004873	RBM47	100	85.354	Octodon_degus
ENSXETG00000012802	rbm47	100	76.020	ENSONIG00000009061	rbm47	100	75.693	Oreochromis_niloticus
ENSXETG00000012802	rbm47	100	83.361	ENSOANG00000008978	RBM47	100	83.694	Ornithorhynchus_anatinus
ENSXETG00000012802	rbm47	100	86.027	ENSOCUG00000012034	RBM47	100	86.027	Oryctolagus_cuniculus
ENSXETG00000012802	rbm47	92	84.127	ENSORLG00000005847	rbm47	100	81.841	Oryzias_latipes
ENSXETG00000012802	rbm47	100	76.254	ENSORLG00020005154	rbm47	100	81.841	Oryzias_latipes_hni
ENSXETG00000012802	rbm47	100	76.254	ENSORLG00015000066	rbm47	100	81.586	Oryzias_latipes_hsok
ENSXETG00000012802	rbm47	100	76.923	ENSOMEG00000010730	rbm47	100	76.589	Oryzias_melastigma
ENSXETG00000012802	rbm47	100	78.511	ENSOGAG00000025193	-	100	78.511	Otolemur_garnettii
ENSXETG00000012802	rbm47	100	85.522	ENSOGAG00000029367	-	100	85.859	Otolemur_garnettii
ENSXETG00000012802	rbm47	100	79.322	ENSOARG00000012711	RBM47	100	79.322	Ovis_aries
ENSXETG00000012802	rbm47	100	84.823	ENSPPAG00000029763	RBM47	100	85.329	Pan_paniscus
ENSXETG00000012802	rbm47	100	82.968	ENSPPRG00000012873	RBM47	99	87.831	Panthera_pardus
ENSXETG00000012802	rbm47	85	83.433	ENSPTIG00000017046	RBM47	100	82.834	Panthera_tigris_altaica
ENSXETG00000012802	rbm47	100	84.823	ENSPTRG00000016006	RBM47	100	85.329	Pan_troglodytes
ENSXETG00000012802	rbm47	100	84.823	ENSPANG00000005980	RBM47	100	85.329	Papio_anubis
ENSXETG00000012802	rbm47	87	86.275	ENSPKIG00000005037	rbm47	100	74.503	Paramormyrops_kingsleyae
ENSXETG00000012802	rbm47	93	81.726	ENSPKIG00000013431	RBM47	98	81.234	Paramormyrops_kingsleyae
ENSXETG00000012802	rbm47	93	91.123	ENSPSIG00000017516	RBM47	97	89.642	Pelodiscus_sinensis
ENSXETG00000012802	rbm47	100	74.916	ENSPMGG00000018540	rbm47	100	76.254	Periophthalmus_magnuspinnatus
ENSXETG00000012802	rbm47	100	83.697	ENSPEMG00000011088	Rbm47	100	83.697	Peromyscus_maniculatus_bairdii
ENSXETG00000012802	rbm47	97	79.002	ENSPFOG00000007997	rbm47	100	75.689	Poecilia_formosa
ENSXETG00000012802	rbm47	92	84.656	ENSPLAG00000002072	rbm47	100	84.656	Poecilia_latipinna
ENSXETG00000012802	rbm47	100	78.203	ENSPMEG00000017492	rbm47	100	81.726	Poecilia_mexicana
ENSXETG00000012802	rbm47	92	84.656	ENSPREG00000008456	rbm47	100	84.656	Poecilia_reticulata
ENSXETG00000012802	rbm47	98	73.906	ENSPPYG00000014688	RBM47	100	73.569	Pongo_abelii
ENSXETG00000012802	rbm47	92	86.280	ENSPCAG00000011879	RBM47	81	87.097	Procavia_capensis
ENSXETG00000012802	rbm47	100	83.249	ENSPCOG00000023451	RBM47	100	84.921	Propithecus_coquereli
ENSXETG00000012802	rbm47	100	86.050	ENSPVAG00000003812	RBM47	100	86.050	Pteropus_vampyrus
ENSXETG00000012802	rbm47	100	76.136	ENSPNYG00000022868	rbm47	100	76.786	Pundamilia_nyererei
ENSXETG00000012802	rbm47	100	76.596	ENSPNAG00000007940	rbm47	100	76.432	Pygocentrus_nattereri
ENSXETG00000012802	rbm47	100	84.317	ENSRNOG00000002408	Rbm47	100	84.317	Rattus_norvegicus
ENSXETG00000012802	rbm47	100	85.329	ENSRBIG00000039601	RBM47	100	85.329	Rhinopithecus_bieti
ENSXETG00000012802	rbm47	100	85.329	ENSRROG00000044696	RBM47	100	85.329	Rhinopithecus_roxellana
ENSXETG00000012802	rbm47	100	81.619	ENSSBOG00000028475	RBM47	100	85.626	Saimiri_boliviensis_boliviensis
ENSXETG00000012802	rbm47	100	86.678	ENSSHAG00000017576	RBM47	100	86.678	Sarcophilus_harrisii
ENSXETG00000012802	rbm47	99	76.471	ENSSFOG00015012445	rbm47	100	74.252	Scleropages_formosus
ENSXETG00000012802	rbm47	100	73.122	ENSSFOG00015024101	RBM47	100	72.788	Scleropages_formosus
ENSXETG00000012802	rbm47	100	74.837	ENSSMAG00000009744	rbm47	100	79.847	Scophthalmus_maximus
ENSXETG00000012802	rbm47	100	78.428	ENSSDUG00000022684	rbm47	100	78.094	Seriola_dumerili
ENSXETG00000012802	rbm47	100	78.965	ENSSLDG00000003109	rbm47	100	81.203	Seriola_lalandi_dorsalis
ENSXETG00000012802	rbm47	93	85.640	ENSSARG00000001735	RBM47	81	87.054	Sorex_araneus
ENSXETG00000012802	rbm47	100	85.452	ENSSPUG00000007515	RBM47	100	88.714	Sphenodon_punctatus
ENSXETG00000012802	rbm47	100	78.500	ENSSPAG00000001257	rbm47	100	81.726	Stegastes_partitus
ENSXETG00000012802	rbm47	100	86.341	ENSSSCG00000008796	RBM47	100	86.341	Sus_scrofa
ENSXETG00000012802	rbm47	100	86.242	ENSTGUG00000008705	RBM47	100	86.074	Taeniopygia_guttata
ENSXETG00000012802	rbm47	100	75.753	ENSTRUG00000014050	rbm47	100	75.418	Takifugu_rubripes
ENSXETG00000012802	rbm47	100	73.977	ENSTNIG00000006127	rbm47	100	74.141	Tetraodon_nigroviridis
ENSXETG00000012802	rbm47	92	81.217	ENSTBEG00000001607	RBM47	76	82.895	Tupaia_belangeri
ENSXETG00000012802	rbm47	100	85.956	ENSTTRG00000002839	RBM47	100	86.464	Tursiops_truncatus
ENSXETG00000012802	rbm47	100	86.003	ENSUAMG00000021346	RBM47	100	86.172	Ursus_americanus
ENSXETG00000012802	rbm47	56	82.192	ENSVPAG00000000641	-	57	82.192	Vicugna_pacos
ENSXETG00000012802	rbm47	96	86.491	ENSVVUG00000014774	RBM47	100	84.848	Vulpes_vulpes
ENSXETG00000012802	rbm47	92	84.656	ENSXCOG00000000780	rbm47	100	84.656	Xiphophorus_couchianus
ENSXETG00000012802	rbm47	100	78.595	ENSXMAG00000009874	rbm47	100	81.472	Xiphophorus_maculatus