EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000012904 (Gene tree)
Gene ID: -
Gene Symbol: pum1
Alias: -
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 25611 bases
Position: chrGL173114.1:218136-243746
Accession: XB-GENE-957401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000028223	PUF	PF00806.19	1.6e-60	1	7
ENSXETP00000028223	PUF	PF00806.19	1.6e-60	2	7
ENSXETP00000028223	PUF	PF00806.19	1.6e-60	3	7
ENSXETP00000028223	PUF	PF00806.19	1.6e-60	4	7
ENSXETP00000028223	PUF	PF00806.19	1.6e-60	5	7
ENSXETP00000028223	PUF	PF00806.19	1.6e-60	6	7
ENSXETP00000028223	PUF	PF00806.19	1.6e-60	7	7

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000028223	-	3576	-	ENSXETP00000028223	1191 (aa)	-	F6WXU8

Gene Model

Click here to download ENSXETG00000012904's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000012904's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000012904	pum1	99	64.618	ENSXETG00000008903	pum2	100	64.867

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000012904	pum1	99	87.657	ENSG00000134644	PUM1	100	88.944	Homo_sapiens
ENSXETG00000012904	pum1	99	71.547	ENSAPOG00000021632	pum1	100	73.328	Acanthochromis_polyacanthus
ENSXETG00000012904	pum1	100	86.706	ENSAMEG00000017656	PUM1	97	87.542	Ailuropoda_melanoleuca
ENSXETG00000012904	pum1	99	71.950	ENSACIG00000021013	pum1	100	73.488	Amphilophus_citrinellus
ENSXETG00000012904	pum1	99	71.547	ENSAOCG00000003944	pum1	100	73.328	Amphiprion_ocellaris
ENSXETG00000012904	pum1	99	71.547	ENSAPEG00000014550	pum1	100	73.328	Amphiprion_percula
ENSXETG00000012904	pum1	99	71.795	ENSATEG00000016004	pum1	100	72.998	Anabas_testudineus
ENSXETG00000012904	pum1	99	87.573	ENSAPLG00000009351	PUM1	100	88.329	Anas_platyrhynchos
ENSXETG00000012904	pum1	99	87.186	ENSACAG00000000682	PUM1	98	87.270	Anolis_carolinensis
ENSXETG00000012904	pum1	99	86.482	ENSANAG00000027865	PUM1	100	88.696	Aotus_nancymaae
ENSXETG00000012904	pum1	89	73.889	ENSACLG00000019354	pum1	100	75.601	Astatotilapia_calliptera
ENSXETG00000012904	pum1	100	75.917	ENSAMXG00000020607	pum1	97	75.561	Astyanax_mexicanus
ENSXETG00000012904	pum1	99	86.398	ENSBTAG00000018979	PUM1	100	89.614	Bos_taurus
ENSXETG00000012904	pum1	99	86.650	ENSCJAG00000006035	PUM1	100	88.889	Callithrix_jacchus
ENSXETG00000012904	pum1	99	85.762	ENSCAFG00000011205	PUM1	100	86.268	Canis_familiaris
ENSXETG00000012904	pum1	91	87.293	ENSCAFG00020024616	PUM1	98	89.130	Canis_lupus_dingo
ENSXETG00000012904	pum1	99	86.398	ENSCHIG00000012952	PUM1	100	89.130	Capra_hircus
ENSXETG00000012904	pum1	99	86.734	ENSTSYG00000008868	PUM1	100	88.944	Carlito_syrichta
ENSXETG00000012904	pum1	99	86.398	ENSCPOG00000031613	PUM1	100	88.323	Cavia_porcellus
ENSXETG00000012904	pum1	99	85.762	ENSCATG00000017991	PUM1	100	89.372	Cercocebus_atys
ENSXETG00000012904	pum1	99	86.398	ENSCLAG00000007662	PUM1	100	88.323	Chinchilla_lanigera
ENSXETG00000012904	pum1	99	86.439	ENSCSAG00000001028	PUM1	100	86.606	Chlorocebus_sabaeus
ENSXETG00000012904	pum1	93	82.000	ENSCHOG00000010245	PUM1	93	81.714	Choloepus_hoffmanni
ENSXETG00000012904	pum1	99	88.442	ENSCPBG00000009288	PUM1	100	89.614	Chrysemys_picta_bellii
ENSXETG00000012904	pum1	99	87.688	ENSCANG00000042606	PUM1	100	88.944	Colobus_angolensis_palliatus
ENSXETG00000012904	pum1	99	86.062	ENSCGRG00001024949	Pum1	100	88.075	Cricetulus_griseus_chok1gshd
ENSXETG00000012904	pum1	99	86.062	ENSCGRG00000014197	Pum1	100	88.075	Cricetulus_griseus_crigri
ENSXETG00000012904	pum1	89	73.098	ENSCSEG00000015981	pum1	100	74.977	Cynoglossus_semilaevis
ENSXETG00000012904	pum1	99	71.216	ENSCVAG00000007043	pum1	100	72.667	Cyprinodon_variegatus
ENSXETG00000012904	pum1	99	76.003	ENSDARG00000099256	pum1	100	76.171	Danio_rerio
ENSXETG00000012904	pum1	99	87.657	ENSDNOG00000010939	PUM1	100	87.657	Dasypus_novemcinctus
ENSXETG00000012904	pum1	84	88.406	ENSDORG00000001875	Pum1	100	88.406	Dipodomys_ordii
ENSXETG00000012904	pum1	87	82.749	ENSETEG00000004355	PUM1	87	83.723	Echinops_telfairi
ENSXETG00000012904	pum1	99	87.238	ENSEASG00005010813	PUM1	100	87.238	Equus_asinus_asinus
ENSXETG00000012904	pum1	99	86.398	ENSECAG00000021369	PUM1	100	87.238	Equus_caballus
ENSXETG00000012904	pum1	76	92.025	ENSEEUG00000003871	PUM1	75	92.025	Erinaceus_europaeus
ENSXETG00000012904	pum1	99	72.391	ENSELUG00000002409	pum1	100	79.084	Esox_lucius
ENSXETG00000012904	pum1	99	86.734	ENSFCAG00000010374	PUM1	100	89.614	Felis_catus
ENSXETG00000012904	pum1	99	87.406	ENSFALG00000001214	PUM1	97	87.323	Ficedula_albicollis
ENSXETG00000012904	pum1	99	86.398	ENSFDAG00000011319	PUM1	100	88.323	Fukomys_damarensis
ENSXETG00000012904	pum1	99	87.657	ENSGALG00000042598	PUM1	99	91.093	Gallus_gallus
ENSXETG00000012904	pum1	99	70.802	ENSGAFG00000015617	pum1	100	72.419	Gambusia_affinis
ENSXETG00000012904	pum1	99	71.346	ENSGACG00000005717	pum1	100	72.659	Gasterosteus_aculeatus
ENSXETG00000012904	pum1	99	87.238	ENSGAGG00000001290	PUM1	99	90.891	Gopherus_agassizii
ENSXETG00000012904	pum1	99	87.688	ENSGGOG00000011983	PUM1	100	88.944	Gorilla_gorilla
ENSXETG00000012904	pum1	99	71.712	ENSHBUG00000018718	pum1	100	73.163	Haplochromis_burtoni
ENSXETG00000012904	pum1	99	86.398	ENSHGLG00000013819	Pum1	100	88.323	Heterocephalus_glaber_female
ENSXETG00000012904	pum1	99	86.398	ENSHGLG00100008621	Pum1	100	88.323	Heterocephalus_glaber_male
ENSXETG00000012904	pum1	89	71.402	ENSHCOG00000005149	pum1	100	72.727	Hippocampus_comes
ENSXETG00000012904	pum1	99	74.604	ENSIPUG00000020421	pum1	100	74.958	Ictalurus_punctatus
ENSXETG00000012904	pum1	99	87.238	ENSSTOG00000010757	PUM1	100	88.323	Ictidomys_tridecemlineatus
ENSXETG00000012904	pum1	99	87.406	ENSJJAG00000000530	Pum1	100	88.571	Jaculus_jaculus
ENSXETG00000012904	pum1	99	71.299	ENSKMAG00000003481	pum1	100	72.585	Kryptolebias_marmoratus
ENSXETG00000012904	pum1	99	71.168	ENSLBEG00000002527	pum1	100	72.870	Labrus_bergylta
ENSXETG00000012904	pum1	100	81.675	ENSLACG00000017188	PUM1	100	81.675	Latimeria_chalumnae
ENSXETG00000012904	pum1	99	83.514	ENSLOCG00000005210	pum1	100	83.611	Lepisosteus_oculatus
ENSXETG00000012904	pum1	99	86.398	ENSLAFG00000003178	PUM1	100	87.238	Loxodonta_africana
ENSXETG00000012904	pum1	99	87.637	ENSMFAG00000010291	PUM1	100	89.372	Macaca_fascicularis
ENSXETG00000012904	pum1	99	87.448	ENSMMUG00000013520	PUM1	100	88.944	Macaca_mulatta
ENSXETG00000012904	pum1	99	87.657	ENSMNEG00000034639	PUM1	100	88.944	Macaca_nemestrina
ENSXETG00000012904	pum1	99	87.657	ENSMLEG00000038743	PUM1	100	88.944	Mandrillus_leucophaeus
ENSXETG00000012904	pum1	99	71.878	ENSMAMG00000011606	pum1	100	74.283	Mastacembelus_armatus
ENSXETG00000012904	pum1	99	71.712	ENSMZEG00005005834	pum1	100	73.163	Maylandia_zebra
ENSXETG00000012904	pum1	100	87.625	ENSMGAG00000000724	PUM1	100	88.514	Meleagris_gallopavo
ENSXETG00000012904	pum1	99	87.238	ENSMAUG00000022090	Pum1	100	87.702	Mesocricetus_auratus
ENSXETG00000012904	pum1	99	87.448	ENSMICG00000007713	-	100	89.130	Microcebus_murinus
ENSXETG00000012904	pum1	100	84.603	ENSMICG00000012213	-	100	85.783	Microcebus_murinus
ENSXETG00000012904	pum1	99	86.482	ENSMOCG00000015463	Pum1	100	88.323	Microtus_ochrogaster
ENSXETG00000012904	pum1	89	79.310	ENSMMOG00000019817	pum1	100	81.928	Mola_mola
ENSXETG00000012904	pum1	99	86.997	ENSMODG00000017067	PUM1	100	87.752	Monodelphis_domestica
ENSXETG00000012904	pum1	89	79.540	ENSMALG00000016399	pum1	100	82.169	Monopterus_albus
ENSXETG00000012904	pum1	99	86.818	MGP_CAROLIEiJ_G0026549	Pum1	100	87.950	Mus_caroli
ENSXETG00000012904	pum1	99	86.902	ENSMUSG00000028580	Pum1	100	87.950	Mus_musculus
ENSXETG00000012904	pum1	99	86.818	MGP_PahariEiJ_G0028881	Pum1	100	87.950	Mus_pahari
ENSXETG00000012904	pum1	99	86.902	MGP_SPRETEiJ_G0027529	Pum1	100	87.950	Mus_spretus
ENSXETG00000012904	pum1	99	87.657	ENSMPUG00000015454	PUM1	100	87.657	Mustela_putorius_furo
ENSXETG00000012904	pum1	99	86.482	ENSMLUG00000006490	PUM1	100	87.322	Myotis_lucifugus
ENSXETG00000012904	pum1	99	87.154	ENSNGAG00000002378	Pum1	100	88.447	Nannospalax_galili
ENSXETG00000012904	pum1	79	77.256	ENSNBRG00000010689	pum1	100	78.668	Neolamprologus_brichardi
ENSXETG00000012904	pum1	99	86.348	ENSNLEG00000001151	PUM1	100	86.957	Nomascus_leucogenys
ENSXETG00000012904	pum1	75	95.455	ENSMEUG00000000976	-	73	95.455	Notamacropus_eugenii
ENSXETG00000012904	pum1	72	96.875	ENSOPRG00000001776	PUM1	71	96.875	Ochotona_princeps
ENSXETG00000012904	pum1	99	87.070	ENSODEG00000003465	PUM1	100	88.199	Octodon_degus
ENSXETG00000012904	pum1	100	71.289	ENSONIG00000002290	pum1	100	73.328	Oreochromis_niloticus
ENSXETG00000012904	pum1	81	69.765	ENSOANG00000004902	-	100	68.744	Ornithorhynchus_anatinus
ENSXETG00000012904	pum1	99	86.230	ENSOCUG00000008641	PUM1	99	87.070	Oryctolagus_cuniculus
ENSXETG00000012904	pum1	99	72.218	ENSORLG00000011482	pum1	100	72.840	Oryzias_latipes
ENSXETG00000012904	pum1	99	72.300	ENSORLG00020019461	pum1	100	72.840	Oryzias_latipes_hni
ENSXETG00000012904	pum1	99	72.300	ENSORLG00015011375	pum1	100	72.922	Oryzias_latipes_hsok
ENSXETG00000012904	pum1	99	83.906	ENSOGAG00000011063	PUM1	100	84.744	Otolemur_garnettii
ENSXETG00000012904	pum1	99	85.810	ENSOARG00000001899	PUM1	100	89.130	Ovis_aries
ENSXETG00000012904	pum1	99	87.688	ENSPPAG00000044003	PUM1	100	88.944	Pan_paniscus
ENSXETG00000012904	pum1	99	87.490	ENSPPRG00000001370	PUM1	100	88.696	Panthera_pardus
ENSXETG00000012904	pum1	99	87.322	ENSPTIG00000010798	PUM1	100	88.447	Panthera_tigris_altaica
ENSXETG00000012904	pum1	99	87.688	ENSPTRG00000000453	PUM1	100	88.944	Pan_troglodytes
ENSXETG00000012904	pum1	99	87.657	ENSPANG00000016338	PUM1	100	89.372	Papio_anubis
ENSXETG00000012904	pum1	99	74.711	ENSPKIG00000010578	pum1	100	74.691	Paramormyrops_kingsleyae
ENSXETG00000012904	pum1	99	88.161	ENSPSIG00000014118	PUM1	100	88.161	Pelodiscus_sinensis
ENSXETG00000012904	pum1	79	75.980	ENSPMGG00000005836	pum1	100	77.111	Periophthalmus_magnuspinnatus
ENSXETG00000012904	pum1	99	87.238	ENSPEMG00000010009	Pum1	100	87.702	Peromyscus_maniculatus_bairdii
ENSXETG00000012904	pum1	99	86.913	ENSPCIG00000014151	PUM1	100	89.614	Phascolarctos_cinereus
ENSXETG00000012904	pum1	94	73.791	ENSPFOG00000007289	pum1	99	76.911	Poecilia_formosa
ENSXETG00000012904	pum1	99	69.453	ENSPLAG00000007256	pum1	100	73.347	Poecilia_latipinna
ENSXETG00000012904	pum1	90	73.849	ENSPMEG00000019543	pum1	99	74.449	Poecilia_mexicana
ENSXETG00000012904	pum1	99	71.464	ENSPREG00000005195	pum1	100	76.513	Poecilia_reticulata
ENSXETG00000012904	pum1	99	85.926	ENSPPYG00000001621	PUM1	100	85.926	Pongo_abelii
ENSXETG00000012904	pum1	77	87.037	ENSPCAG00000001979	PUM1	74	87.037	Procavia_capensis
ENSXETG00000012904	pum1	99	86.902	ENSPCOG00000004398	PUM1	100	89.130	Propithecus_coquereli
ENSXETG00000012904	pum1	99	85.595	ENSPVAG00000005207	PUM1	97	85.595	Pteropus_vampyrus
ENSXETG00000012904	pum1	99	71.795	ENSPNYG00000009518	pum1	100	73.245	Pundamilia_nyererei
ENSXETG00000012904	pum1	99	75.920	ENSPNAG00000026728	pum1	100	76.366	Pygocentrus_nattereri
ENSXETG00000012904	pum1	99	86.062	ENSRNOG00000011709	Pum1	100	86.902	Rattus_norvegicus
ENSXETG00000012904	pum1	99	87.688	ENSRBIG00000042521	PUM1	100	89.372	Rhinopithecus_bieti
ENSXETG00000012904	pum1	100	87.699	ENSRROG00000020156	PUM1	100	88.944	Rhinopithecus_roxellana
ENSXETG00000012904	pum1	99	86.734	ENSSBOG00000032037	PUM1	100	88.889	Saimiri_boliviensis_boliviensis
ENSXETG00000012904	pum1	99	86.913	ENSSHAG00000010918	PUM1	100	87.668	Sarcophilus_harrisii
ENSXETG00000012904	pum1	99	71.795	ENSSMAG00000010918	pum1	100	72.832	Scophthalmus_maximus
ENSXETG00000012904	pum1	99	71.795	ENSSDUG00000009021	pum1	100	73.410	Seriola_dumerili
ENSXETG00000012904	pum1	95	72.435	ENSSLDG00000009667	pum1	100	74.277	Seriola_lalandi_dorsalis
ENSXETG00000012904	pum1	94	87.025	ENSSARG00000003055	PUM1	92	87.025	Sorex_araneus
ENSXETG00000012904	pum1	99	88.413	ENSSPUG00000006267	PUM1	100	88.413	Sphenodon_punctatus
ENSXETG00000012904	pum1	99	71.547	ENSSPAG00000016636	pum1	100	73.328	Stegastes_partitus
ENSXETG00000012904	pum1	99	89.357	ENSSSCG00000003591	PUM1	100	89.614	Sus_scrofa
ENSXETG00000012904	pum1	99	71.854	ENSTRUG00000013121	pum1	100	79.038	Takifugu_rubripes
ENSXETG00000012904	pum1	100	71.970	ENSTNIG00000016983	pum1	99	73.663	Tetraodon_nigroviridis
ENSXETG00000012904	pum1	87	93.902	ENSTBEG00000013810	PUM1	89	93.902	Tupaia_belangeri
ENSXETG00000012904	pum1	91	88.143	ENSTTRG00000007436	PUM1	89	88.143	Tursiops_truncatus
ENSXETG00000012904	pum1	98	85.373	ENSUAMG00000018262	-	100	86.293	Ursus_americanus
ENSXETG00000012904	pum1	95	89.614	ENSUMAG00000009211	PUM1	100	89.614	Ursus_maritimus
ENSXETG00000012904	pum1	92	89.193	ENSVPAG00000005902	PUM1	92	89.193	Vicugna_pacos
ENSXETG00000012904	pum1	99	86.818	ENSVVUG00000014631	PUM1	100	89.614	Vulpes_vulpes
ENSXETG00000012904	pum1	99	70.637	ENSXMAG00000002945	pum1	100	73.347	Xiphophorus_maculatus