EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000012991 (Gene tree)
Gene ID: -
Gene Symbol: chd3
Alias: -
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 52576 bases
Position: chrGL173311.1:487687-540262
Accession: XB-GENE-1008908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000028484	ResIII	PF04851.15	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000028475	-	1107	-	ENSXETP00000028475	369 (aa)	-	F6PV90
ENSXETT00000028484	-	6033	-	ENSXETP00000028484	2009 (aa)	-	F6PUX9

Gene Model

Click here to download ENSXETG00000012991's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000012991's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000012991	chd3	90	63.913	ENSXETG00000002904	chd5	97	64.146
ENSXETG00000012991	chd3	61	67.711	ENSXETG00000026410	chd4	99	71.812

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000012991	chd3	92	73.806	ENSG00000170004	CHD3	97	72.589	Homo_sapiens
ENSXETG00000012991	chd3	77	83.673	ENSAPOG00000005614	chd3	94	83.673	Acanthochromis_polyacanthus
ENSXETG00000012991	chd3	68	74.623	ENSAMEG00000003025	-	100	74.766	Ailuropoda_melanoleuca
ENSXETG00000012991	chd3	78	83.598	ENSACIG00000019671	chd3	99	83.598	Amphilophus_citrinellus
ENSXETG00000012991	chd3	78	83.163	ENSAOCG00000023784	chd3	98	83.163	Amphiprion_ocellaris
ENSXETG00000012991	chd3	70	72.161	ENSAPEG00000006341	chd3	96	67.932	Amphiprion_percula
ENSXETG00000012991	chd3	92	67.789	ENSATEG00000000848	chd3	95	81.633	Anabas_testudineus
ENSXETG00000012991	chd3	92	74.947	ENSACAG00000004276	CHD3	94	73.265	Anolis_carolinensis
ENSXETG00000012991	chd3	92	73.634	ENSANAG00000034323	CHD3	99	74.094	Aotus_nancymaae
ENSXETG00000012991	chd3	85	76.358	ENSACLG00000009222	chd3	99	65.271	Astatotilapia_calliptera
ENSXETG00000012991	chd3	92	73.947	ENSBTAG00000014377	CHD3	96	73.447	Bos_taurus
ENSXETG00000012991	chd3	97	71.287	ENSCJAG00000014766	CHD3	97	72.640	Callithrix_jacchus
ENSXETG00000012991	chd3	92	73.726	ENSCAFG00000016859	CHD3	97	72.459	Canis_familiaris
ENSXETG00000012991	chd3	92	73.723	ENSCAFG00020007422	CHD3	100	73.778	Canis_lupus_dingo
ENSXETG00000012991	chd3	92	73.648	ENSCHIG00000016737	CHD3	98	72.487	Capra_hircus
ENSXETG00000012991	chd3	92	73.963	ENSTSYG00000035658	CHD3	99	71.972	Carlito_syrichta
ENSXETG00000012991	chd3	97	70.823	ENSCAPG00000014864	CHD3	97	71.959	Cavia_aperea
ENSXETG00000012991	chd3	97	71.272	ENSCPOG00000022653	CHD3	97	72.417	Cavia_porcellus
ENSXETG00000012991	chd3	97	71.139	ENSCCAG00000034792	CHD3	97	72.487	Cebus_capucinus
ENSXETG00000012991	chd3	92	73.872	ENSCATG00000041717	CHD3	97	72.653	Cercocebus_atys
ENSXETG00000012991	chd3	92	73.856	ENSCLAG00000010523	CHD3	99	72.649	Chinchilla_lanigera
ENSXETG00000012991	chd3	92	74.132	ENSCSAG00000011122	CHD3	98	72.954	Chlorocebus_sabaeus
ENSXETG00000012991	chd3	83	76.519	ENSCPBG00000011966	CHD3	99	76.710	Chrysemys_picta_bellii
ENSXETG00000012991	chd3	92	73.820	ENSCANG00000037641	CHD3	99	71.300	Colobus_angolensis_palliatus
ENSXETG00000012991	chd3	92	73.762	ENSCGRG00001011306	Chd3	99	72.454	Cricetulus_griseus_chok1gshd
ENSXETG00000012991	chd3	89	81.395	ENSCGRG00000007878	Chd3	97	68.811	Cricetulus_griseus_crigri
ENSXETG00000012991	chd3	88	69.626	ENSCSEG00000004489	chd3	95	82.031	Cynoglossus_semilaevis
ENSXETG00000012991	chd3	82	81.961	ENSCVAG00000007293	chd3	95	81.961	Cyprinodon_variegatus
ENSXETG00000012991	chd3	85	77.365	ENSDARG00000021405	chd3	99	69.269	Danio_rerio
ENSXETG00000012991	chd3	97	60.672	ENSDNOG00000047846	CHD3	97	61.422	Dasypus_novemcinctus
ENSXETG00000012991	chd3	97	69.945	ENSDORG00000010713	Chd3	99	72.301	Dipodomys_ordii
ENSXETG00000012991	chd3	90	72.414	ENSETEG00000017733	CHD3	98	70.597	Echinops_telfairi
ENSXETG00000012991	chd3	53	70.921	ENSEBUG00000008310	chd3	99	65.226	Eptatretus_burgeri
ENSXETG00000012991	chd3	90	73.566	ENSEASG00005019360	CHD3	100	73.873	Equus_asinus_asinus
ENSXETG00000012991	chd3	90	73.566	ENSECAG00000010051	CHD3	100	73.981	Equus_caballus
ENSXETG00000012991	chd3	87	66.276	ENSEEUG00000015205	CHD3	88	67.273	Erinaceus_europaeus
ENSXETG00000012991	chd3	75	91.837	ENSELUG00000019499	chd3	99	91.837	Esox_lucius
ENSXETG00000012991	chd3	92	73.897	ENSFCAG00000009629	CHD3	97	70.980	Felis_catus
ENSXETG00000012991	chd3	92	74.039	ENSFDAG00000008220	CHD3	95	74.131	Fukomys_damarensis
ENSXETG00000012991	chd3	83	72.837	ENSGMOG00000013599	chd3	90	73.239	Gadus_morhua
ENSXETG00000012991	chd3	53	68.478	ENSGAFG00000004055	chd3	98	67.333	Gambusia_affinis
ENSXETG00000012991	chd3	95	66.131	ENSGACG00000019275	chd3	99	66.599	Gasterosteus_aculeatus
ENSXETG00000012991	chd3	74	75.839	ENSGAGG00000013164	CHD3	97	75.906	Gopherus_agassizii
ENSXETG00000012991	chd3	92	73.806	ENSGGOG00000013496	CHD3	99	71.285	Gorilla_gorilla
ENSXETG00000012991	chd3	92	73.753	ENSHGLG00000012017	CHD3	98	72.335	Heterocephalus_glaber_female
ENSXETG00000012991	chd3	81	70.482	ENSHGLG00100013902	CHD3	97	68.267	Heterocephalus_glaber_male
ENSXETG00000012991	chd3	88	68.544	ENSHCOG00000010170	chd3	95	67.623	Hippocampus_comes
ENSXETG00000012991	chd3	81	72.441	ENSIPUG00000003271	chd3	94	71.969	Ictalurus_punctatus
ENSXETG00000012991	chd3	92	73.753	ENSSTOG00000025907	CHD3	98	72.589	Ictidomys_tridecemlineatus
ENSXETG00000012991	chd3	97	71.036	ENSJJAG00000017633	Chd3	99	72.149	Jaculus_jaculus
ENSXETG00000012991	chd3	80	89.573	ENSKMAG00000019292	chd3	99	71.350	Kryptolebias_marmoratus
ENSXETG00000012991	chd3	88	64.136	ENSLBEG00000028485	chd3	91	82.072	Labrus_bergylta
ENSXETG00000012991	chd3	90	67.516	ENSLACG00000008031	CHD3	97	66.600	Latimeria_chalumnae
ENSXETG00000012991	chd3	92	71.511	ENSLOCG00000013965	chd3	96	70.561	Lepisosteus_oculatus
ENSXETG00000012991	chd3	84	78.121	ENSLAFG00000000572	CHD3	94	78.184	Loxodonta_africana
ENSXETG00000012991	chd3	92	73.820	ENSMFAG00000020113	CHD3	99	72.180	Macaca_fascicularis
ENSXETG00000012991	chd3	92	72.143	ENSMMUG00000022221	CHD3	97	71.334	Macaca_mulatta
ENSXETG00000012991	chd3	92	73.820	ENSMNEG00000001728	CHD3	99	73.362	Macaca_nemestrina
ENSXETG00000012991	chd3	98	69.454	ENSMLEG00000032249	CHD3	97	72.653	Mandrillus_leucophaeus
ENSXETG00000012991	chd3	83	69.800	ENSMAMG00000000564	chd3	99	70.035	Mastacembelus_armatus
ENSXETG00000012991	chd3	92	73.892	ENSMAUG00000013873	Chd3	99	71.877	Mesocricetus_auratus
ENSXETG00000012991	chd3	97	69.132	ENSMICG00000008741	CHD3	97	70.946	Microcebus_murinus
ENSXETG00000012991	chd3	92	73.986	ENSMOCG00000004848	Chd3	99	72.570	Microtus_ochrogaster
ENSXETG00000012991	chd3	90	69.584	ENSMMOG00000012699	chd3	99	68.100	Mola_mola
ENSXETG00000012991	chd3	90	73.160	ENSMODG00000007509	CHD3	100	73.593	Monodelphis_domestica
ENSXETG00000012991	chd3	92	73.618	MGP_CAROLIEiJ_G0016564	Chd3	99	72.893	Mus_caroli
ENSXETG00000012991	chd3	92	73.632	ENSMUSG00000018474	Chd3	99	73.035	Mus_musculus
ENSXETG00000012991	chd3	92	73.881	MGP_PahariEiJ_G0017695	Chd3	99	73.125	Mus_pahari
ENSXETG00000012991	chd3	92	73.737	MGP_SPRETEiJ_G0017400	Chd3	99	73.035	Mus_spretus
ENSXETG00000012991	chd3	85	75.115	ENSMPUG00000008861	CHD3	100	75.287	Mustela_putorius_furo
ENSXETG00000012991	chd3	97	71.591	ENSMLUG00000014643	-	97	72.608	Myotis_lucifugus
ENSXETG00000012991	chd3	92	73.776	ENSNGAG00000000773	Chd3	96	72.556	Nannospalax_galili
ENSXETG00000012991	chd3	83	68.334	ENSNBRG00000000636	chd3	98	67.572	Neolamprologus_brichardi
ENSXETG00000012991	chd3	86	81.633	ENSNLEG00000009770	CHD3	98	71.103	Nomascus_leucogenys
ENSXETG00000012991	chd3	78	73.830	ENSMEUG00000005852	CHD3	86	73.830	Notamacropus_eugenii
ENSXETG00000012991	chd3	92	73.879	ENSOPRG00000011069	CHD3	100	73.789	Ochotona_princeps
ENSXETG00000012991	chd3	97	71.358	ENSODEG00000017785	CHD3	97	72.686	Octodon_degus
ENSXETG00000012991	chd3	90	69.486	ENSONIG00000009292	chd3	99	68.685	Oreochromis_niloticus
ENSXETG00000012991	chd3	92	70.842	ENSOCUG00000029299	CHD3	99	69.853	Oryctolagus_cuniculus
ENSXETG00000012991	chd3	78	64.761	ENSORLG00000007107	chd3	95	62.908	Oryzias_latipes
ENSXETG00000012991	chd3	52	66.321	ENSORLG00020008387	chd3	94	65.213	Oryzias_latipes_hni
ENSXETG00000012991	chd3	68	71.963	ENSOMEG00000013691	chd3	99	70.323	Oryzias_melastigma
ENSXETG00000012991	chd3	92	74.016	ENSOGAG00000003216	CHD3	98	72.653	Otolemur_garnettii
ENSXETG00000012991	chd3	92	74.532	ENSOARG00000017855	CHD3	97	73.230	Ovis_aries
ENSXETG00000012991	chd3	92	71.872	ENSPPAG00000032886	CHD3	99	70.741	Pan_paniscus
ENSXETG00000012991	chd3	97	71.443	ENSPPRG00000000626	CHD3	99	71.078	Panthera_pardus
ENSXETG00000012991	chd3	92	73.858	ENSPTRG00000008714	CHD3	99	71.338	Pan_troglodytes
ENSXETG00000012991	chd3	92	73.872	ENSPANG00000023938	CHD3	99	72.234	Papio_anubis
ENSXETG00000012991	chd3	95	68.967	ENSPKIG00000006305	chd3	99	72.311	Paramormyrops_kingsleyae
ENSXETG00000012991	chd3	54	76.615	ENSPSIG00000010177	CHD3	98	77.070	Pelodiscus_sinensis
ENSXETG00000012991	chd3	92	74.092	ENSPEMG00000014262	Chd3	98	72.774	Peromyscus_maniculatus_bairdii
ENSXETG00000012991	chd3	92	73.770	ENSPCIG00000005442	CHD3	95	82.213	Phascolarctos_cinereus
ENSXETG00000012991	chd3	90	68.595	ENSPFOG00000012464	chd3	91	67.866	Poecilia_formosa
ENSXETG00000012991	chd3	82	84.980	ENSPLAG00000002887	chd3	94	84.980	Poecilia_latipinna
ENSXETG00000012991	chd3	51	67.923	ENSPMEG00000016725	chd3	92	64.305	Poecilia_mexicana
ENSXETG00000012991	chd3	84	80.351	ENSPREG00000011044	chd3	97	76.206	Poecilia_reticulata
ENSXETG00000012991	chd3	95	69.822	ENSPPYG00000007940	CHD3	98	70.061	Pongo_abelii
ENSXETG00000012991	chd3	88	75.971	ENSPCAG00000004350	CHD3	95	76.132	Procavia_capensis
ENSXETG00000012991	chd3	97	71.471	ENSPCOG00000020952	CHD3	97	72.709	Propithecus_coquereli
ENSXETG00000012991	chd3	78	77.396	ENSPVAG00000016344	CHD3	82	77.396	Pteropus_vampyrus
ENSXETG00000012991	chd3	95	67.958	ENSPNAG00000020393	chd3	99	79.021	Pygocentrus_nattereri
ENSXETG00000012991	chd3	90	73.427	ENSRNOG00000009722	Chd3	100	73.588	Rattus_norvegicus
ENSXETG00000012991	chd3	92	71.954	ENSRBIG00000033562	CHD3	99	71.951	Rhinopithecus_bieti
ENSXETG00000012991	chd3	92	73.762	ENSRROG00000029554	CHD3	99	72.540	Rhinopithecus_roxellana
ENSXETG00000012991	chd3	97	71.287	ENSSBOG00000020719	CHD3	99	73.294	Saimiri_boliviensis_boliviensis
ENSXETG00000012991	chd3	92	73.428	ENSSHAG00000014412	CHD3	99	72.041	Sarcophilus_harrisii
ENSXETG00000012991	chd3	88	68.045	ENSSFOG00015023123	chd3	98	68.462	Scleropages_formosus
ENSXETG00000012991	chd3	77	93.168	ENSSMAG00000006451	chd3	100	69.309	Scophthalmus_maximus
ENSXETG00000012991	chd3	79	82.143	ENSSPAG00000013694	chd3	99	71.197	Stegastes_partitus
ENSXETG00000012991	chd3	92	74.053	ENSSSCG00000021363	CHD3	100	74.220	Sus_scrofa
ENSXETG00000012991	chd3	71	69.548	ENSTRUG00000014990	chd3	93	67.327	Takifugu_rubripes
ENSXETG00000012991	chd3	92	69.374	ENSTNIG00000012998	chd3	99	67.926	Tetraodon_nigroviridis
ENSXETG00000012991	chd3	58	90.909	ENSTBEG00000011454	-	69	90.909	Tupaia_belangeri
ENSXETG00000012991	chd3	95	75.576	ENSTTRG00000010295	CHD3	95	75.826	Tursiops_truncatus
ENSXETG00000012991	chd3	90	73.287	ENSUAMG00000005475	CHD3	99	73.594	Ursus_americanus
ENSXETG00000012991	chd3	92	73.536	ENSVVUG00000028011	CHD3	99	73.731	Vulpes_vulpes
ENSXETG00000012991	chd3	76	84.127	ENSXMAG00000016035	chd3	99	84.127	Xiphophorus_maculatus