EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000013339 (Gene tree)
Gene ID: -
Gene Symbol: sf3b1
Alias: -
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 77058 bases
Position: chrGL172638.1:254170-331227
Accession: XB-GENE-959867
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000029260	SF3b1	PF08920.10	8.9e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000029260	-	4000	XM_012971012	ENSXETP00000029260	1303 (aa)	XP_012826466	F6ZH61

Gene Model

Click here to download ENSXETG00000013339's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000013339's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000013339	sf3b1	100	96.628	ENSG00000115524	SF3B1	100	96.628	Homo_sapiens
ENSXETG00000013339	sf3b1	100	92.103	ENSAPOG00000011894	sf3b1	100	92.103	Acanthochromis_polyacanthus
ENSXETG00000013339	sf3b1	99	96.166	ENSAMEG00000013809	SF3B1	99	96.166	Ailuropoda_melanoleuca
ENSXETG00000013339	sf3b1	100	91.540	ENSACIG00000020910	sf3b1	97	91.540	Amphilophus_citrinellus
ENSXETG00000013339	sf3b1	100	92.103	ENSAOCG00000004478	sf3b1	100	92.103	Amphiprion_ocellaris
ENSXETG00000013339	sf3b1	100	92.103	ENSAPEG00000012937	sf3b1	100	92.103	Amphiprion_percula
ENSXETG00000013339	sf3b1	100	92.249	ENSATEG00000020435	sf3b1	100	92.325	Anabas_testudineus
ENSXETG00000013339	sf3b1	99	96.754	ENSAPLG00000003993	SF3B1	99	96.754	Anas_platyrhynchos
ENSXETG00000013339	sf3b1	100	96.242	ENSACAG00000009612	SF3B1	100	96.242	Anolis_carolinensis
ENSXETG00000013339	sf3b1	100	96.628	ENSANAG00000021577	SF3B1	100	97.755	Aotus_nancymaae
ENSXETG00000013339	sf3b1	100	91.185	ENSACLG00000023470	sf3b1	100	91.185	Astatotilapia_calliptera
ENSXETG00000013339	sf3b1	100	92.477	ENSAMXG00000002219	sf3b1	100	92.477	Astyanax_mexicanus
ENSXETG00000013339	sf3b1	100	96.552	ENSBTAG00000008915	SF3B1	100	96.552	Bos_taurus
ENSXETG00000013339	sf3b1	99	64.736	WBGene00011605	sftb-1	99	64.959	Caenorhabditis_elegans
ENSXETG00000013339	sf3b1	100	96.628	ENSCJAG00000003902	SF3B1	100	96.628	Callithrix_jacchus
ENSXETG00000013339	sf3b1	100	96.628	ENSCAFG00000010826	SF3B1	100	96.628	Canis_familiaris
ENSXETG00000013339	sf3b1	100	96.628	ENSCAFG00020004750	SF3B1	100	96.628	Canis_lupus_dingo
ENSXETG00000013339	sf3b1	100	96.552	ENSCHIG00000015226	SF3B1	100	96.552	Capra_hircus
ENSXETG00000013339	sf3b1	100	96.552	ENSTSYG00000009214	SF3B1	100	96.552	Carlito_syrichta
ENSXETG00000013339	sf3b1	99	96.467	ENSCAPG00000006547	SF3B1	99	96.467	Cavia_aperea
ENSXETG00000013339	sf3b1	99	96.754	ENSCPOG00000009353	SF3B1	100	96.754	Cavia_porcellus
ENSXETG00000013339	sf3b1	100	96.628	ENSCCAG00000020506	SF3B1	100	96.628	Cebus_capucinus
ENSXETG00000013339	sf3b1	100	96.628	ENSCATG00000035735	SF3B1	100	96.628	Cercocebus_atys
ENSXETG00000013339	sf3b1	99	96.757	ENSCLAG00000014767	SF3B1	99	96.757	Chinchilla_lanigera
ENSXETG00000013339	sf3b1	100	96.628	ENSCSAG00000011505	SF3B1	100	96.628	Chlorocebus_sabaeus
ENSXETG00000013339	sf3b1	76	94.231	ENSCHOG00000009860	SF3B1	76	94.231	Choloepus_hoffmanni
ENSXETG00000013339	sf3b1	100	96.626	ENSCPBG00000021902	SF3B1	99	97.710	Chrysemys_picta_bellii
ENSXETG00000013339	sf3b1	68	77.288	ENSCING00000002558	-	99	77.642	Ciona_intestinalis
ENSXETG00000013339	sf3b1	99	78.804	ENSCSAVG00000002559	-	99	78.653	Ciona_savignyi
ENSXETG00000013339	sf3b1	100	96.628	ENSCANG00000029415	SF3B1	100	96.628	Colobus_angolensis_palliatus
ENSXETG00000013339	sf3b1	100	96.628	ENSCGRG00001016990	Sf3b1	100	96.628	Cricetulus_griseus_chok1gshd
ENSXETG00000013339	sf3b1	100	96.628	ENSCGRG00000005301	Sf3b1	100	96.628	Cricetulus_griseus_crigri
ENSXETG00000013339	sf3b1	100	87.957	ENSCSEG00000003860	sf3b1	100	87.957	Cynoglossus_semilaevis
ENSXETG00000013339	sf3b1	96	92.016	ENSCVAG00000003680	sf3b1	99	92.016	Cyprinodon_variegatus
ENSXETG00000013339	sf3b1	100	91.875	ENSDARG00000056138	sf3b1	100	91.951	Danio_rerio
ENSXETG00000013339	sf3b1	100	96.554	ENSDNOG00000011754	SF3B1	100	96.554	Dasypus_novemcinctus
ENSXETG00000013339	sf3b1	99	94.664	ENSDORG00000002399	Sf3b1	100	94.664	Dipodomys_ordii
ENSXETG00000013339	sf3b1	100	75.956	FBgn0031266	Sf3b1	100	75.956	Drosophila_melanogaster
ENSXETG00000013339	sf3b1	83	95.640	ENSETEG00000009188	SF3B1	100	95.640	Echinops_telfairi
ENSXETG00000013339	sf3b1	99	85.736	ENSEBUG00000004325	sf3b1	100	88.715	Eptatretus_burgeri
ENSXETG00000013339	sf3b1	100	96.628	ENSEASG00005020159	SF3B1	98	96.628	Equus_asinus_asinus
ENSXETG00000013339	sf3b1	100	96.628	ENSECAG00000021657	SF3B1	98	96.628	Equus_caballus
ENSXETG00000013339	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSXETG00000013339	sf3b1	100	91.623	ENSELUG00000005977	sf3b1	98	91.623	Esox_lucius
ENSXETG00000013339	sf3b1	100	96.628	ENSFCAG00000005038	SF3B1	100	96.628	Felis_catus
ENSXETG00000013339	sf3b1	99	96.677	ENSFALG00000004281	SF3B1	99	96.677	Ficedula_albicollis
ENSXETG00000013339	sf3b1	100	96.628	ENSFDAG00000017510	SF3B1	100	96.628	Fukomys_damarensis
ENSXETG00000013339	sf3b1	100	91.268	ENSFHEG00000014333	sf3b1	100	91.268	Fundulus_heteroclitus
ENSXETG00000013339	sf3b1	100	91.787	ENSGMOG00000006773	sf3b1	100	91.787	Gadus_morhua
ENSXETG00000013339	sf3b1	100	96.626	ENSGALG00000008038	SF3B1	100	96.626	Gallus_gallus
ENSXETG00000013339	sf3b1	100	90.923	ENSGAFG00000000704	sf3b1	99	92.607	Gambusia_affinis
ENSXETG00000013339	sf3b1	100	92.079	ENSGACG00000008839	sf3b1	100	92.079	Gasterosteus_aculeatus
ENSXETG00000013339	sf3b1	100	96.037	ENSGAGG00000017478	SF3B1	100	96.037	Gopherus_agassizii
ENSXETG00000013339	sf3b1	99	90.100	ENSGGOG00000009264	SF3B1	99	91.583	Gorilla_gorilla
ENSXETG00000013339	sf3b1	99	91.248	ENSHBUG00000007705	sf3b1	99	91.248	Haplochromis_burtoni
ENSXETG00000013339	sf3b1	99	96.757	ENSHGLG00000008285	-	99	96.757	Heterocephalus_glaber_female
ENSXETG00000013339	sf3b1	99	94.749	ENSHGLG00100005535	-	99	94.749	Heterocephalus_glaber_male
ENSXETG00000013339	sf3b1	100	91.465	ENSHCOG00000016775	sf3b1	100	91.390	Hippocampus_comes
ENSXETG00000013339	sf3b1	100	92.553	ENSIPUG00000013171	sf3b1	100	92.553	Ictalurus_punctatus
ENSXETG00000013339	sf3b1	100	96.628	ENSSTOG00000011034	SF3B1	100	96.628	Ictidomys_tridecemlineatus
ENSXETG00000013339	sf3b1	99	96.667	ENSJJAG00000010903	Sf3b1	99	96.667	Jaculus_jaculus
ENSXETG00000013339	sf3b1	100	91.439	ENSKMAG00000004009	sf3b1	100	91.364	Kryptolebias_marmoratus
ENSXETG00000013339	sf3b1	100	91.985	ENSLBEG00000022208	sf3b1	100	91.985	Labrus_bergylta
ENSXETG00000013339	sf3b1	99	91.034	ENSLACG00000014832	SF3B1	99	90.881	Latimeria_chalumnae
ENSXETG00000013339	sf3b1	100	93.399	ENSLOCG00000003899	sf3b1	100	93.399	Lepisosteus_oculatus
ENSXETG00000013339	sf3b1	100	96.628	ENSLAFG00000001956	SF3B1	100	96.628	Loxodonta_africana
ENSXETG00000013339	sf3b1	99	96.757	ENSMMUG00000022430	SF3B1	99	96.757	Macaca_mulatta
ENSXETG00000013339	sf3b1	100	96.628	ENSMNEG00000042333	SF3B1	100	97.755	Macaca_nemestrina
ENSXETG00000013339	sf3b1	94	91.294	ENSMLEG00000026141	SF3B1	98	91.396	Mandrillus_leucophaeus
ENSXETG00000013339	sf3b1	100	92.249	ENSMAMG00000010241	sf3b1	100	92.249	Mastacembelus_armatus
ENSXETG00000013339	sf3b1	100	91.185	ENSMZEG00005021254	sf3b1	100	91.185	Maylandia_zebra
ENSXETG00000013339	sf3b1	99	96.136	ENSMGAG00000007017	SF3B1	99	96.136	Meleagris_gallopavo
ENSXETG00000013339	sf3b1	99	92.510	ENSMAUG00000009071	Sf3b1	99	92.510	Mesocricetus_auratus
ENSXETG00000013339	sf3b1	100	96.552	ENSMICG00000013879	SF3B1	100	96.552	Microcebus_murinus
ENSXETG00000013339	sf3b1	99	92.664	ENSMOCG00000000455	Sf3b1	99	92.664	Microtus_ochrogaster
ENSXETG00000013339	sf3b1	83	91.416	ENSMMOG00000000475	sf3b1	100	91.507	Mola_mola
ENSXETG00000013339	sf3b1	100	96.245	ENSMODG00000012275	SF3B1	100	96.245	Monodelphis_domestica
ENSXETG00000013339	sf3b1	100	92.097	ENSMALG00000017211	sf3b1	100	92.097	Monopterus_albus
ENSXETG00000013339	sf3b1	100	96.628	MGP_CAROLIEiJ_G0014141	Sf3b1	100	96.628	Mus_caroli
ENSXETG00000013339	sf3b1	100	96.628	ENSMUSG00000025982	Sf3b1	100	96.628	Mus_musculus
ENSXETG00000013339	sf3b1	100	96.628	MGP_SPRETEiJ_G0014947	Sf3b1	100	96.628	Mus_spretus
ENSXETG00000013339	sf3b1	100	96.628	ENSMPUG00000007799	SF3B1	100	96.628	Mustela_putorius_furo
ENSXETG00000013339	sf3b1	100	95.402	ENSMLUG00000000840	SF3B1	100	95.402	Myotis_lucifugus
ENSXETG00000013339	sf3b1	99	96.754	ENSNGAG00000021884	-	99	96.754	Nannospalax_galili
ENSXETG00000013339	sf3b1	100	87.805	ENSNBRG00000015816	sf3b1	100	87.805	Neolamprologus_brichardi
ENSXETG00000013339	sf3b1	100	96.628	ENSNLEG00000006861	SF3B1	100	96.628	Nomascus_leucogenys
ENSXETG00000013339	sf3b1	70	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSXETG00000013339	sf3b1	100	85.441	ENSOPRG00000008596	SF3B1	100	85.441	Ochotona_princeps
ENSXETG00000013339	sf3b1	100	96.628	ENSODEG00000011153	-	100	96.628	Octodon_degus
ENSXETG00000013339	sf3b1	100	91.185	ENSONIG00000013758	sf3b1	100	91.185	Oreochromis_niloticus
ENSXETG00000013339	sf3b1	83	97.694	ENSOCUG00000012722	-	96	97.694	Oryctolagus_cuniculus
ENSXETG00000013339	sf3b1	100	91.869	ENSORLG00000020219	sf3b1	100	91.869	Oryzias_latipes
ENSXETG00000013339	sf3b1	100	91.869	ENSORLG00020001746	sf3b1	100	91.869	Oryzias_latipes_hni
ENSXETG00000013339	sf3b1	64	88.690	ENSORLG00015001759	sf3b1	98	88.690	Oryzias_latipes_hsok
ENSXETG00000013339	sf3b1	100	91.951	ENSOMEG00000019231	sf3b1	100	91.951	Oryzias_melastigma
ENSXETG00000013339	sf3b1	100	96.552	ENSOARG00000015374	SF3B1	100	96.552	Ovis_aries
ENSXETG00000013339	sf3b1	100	96.628	ENSPPAG00000035007	SF3B1	100	96.628	Pan_paniscus
ENSXETG00000013339	sf3b1	100	96.628	ENSPPRG00000009090	SF3B1	100	96.628	Panthera_pardus
ENSXETG00000013339	sf3b1	100	96.628	ENSPTIG00000021557	SF3B1	100	96.628	Panthera_tigris_altaica
ENSXETG00000013339	sf3b1	99	88.376	ENSPTRG00000012771	SF3B1	99	88.376	Pan_troglodytes
ENSXETG00000013339	sf3b1	100	96.628	ENSPANG00000013417	SF3B1	100	96.628	Papio_anubis
ENSXETG00000013339	sf3b1	100	93.151	ENSPKIG00000000784	sf3b1	100	93.151	Paramormyrops_kingsleyae
ENSXETG00000013339	sf3b1	99	95.437	ENSPSIG00000017222	SF3B1	98	95.437	Pelodiscus_sinensis
ENSXETG00000013339	sf3b1	90	91.912	ENSPMGG00000004330	sf3b1	99	91.912	Periophthalmus_magnuspinnatus
ENSXETG00000013339	sf3b1	99	96.757	ENSPEMG00000010699	Sf3b1	100	96.757	Peromyscus_maniculatus_bairdii
ENSXETG00000013339	sf3b1	100	88.838	ENSPMAG00000001311	sf3b1	100	88.990	Petromyzon_marinus
ENSXETG00000013339	sf3b1	100	96.245	ENSPCIG00000010642	SF3B1	100	96.245	Phascolarctos_cinereus
ENSXETG00000013339	sf3b1	100	91.882	ENSPFOG00000000073	sf3b1	100	91.882	Poecilia_formosa
ENSXETG00000013339	sf3b1	100	91.951	ENSPLAG00000002293	sf3b1	100	91.951	Poecilia_latipinna
ENSXETG00000013339	sf3b1	100	91.951	ENSPMEG00000000446	sf3b1	98	91.951	Poecilia_mexicana
ENSXETG00000013339	sf3b1	100	92.027	ENSPREG00000019652	sf3b1	100	92.027	Poecilia_reticulata
ENSXETG00000013339	sf3b1	100	97.445	ENSPPYG00000013044	SF3B1	100	97.445	Pongo_abelii
ENSXETG00000013339	sf3b1	100	96.475	ENSPCAG00000009292	SF3B1	100	96.475	Procavia_capensis
ENSXETG00000013339	sf3b1	100	96.552	ENSPCOG00000024074	SF3B1	100	96.552	Propithecus_coquereli
ENSXETG00000013339	sf3b1	100	96.628	ENSPVAG00000008302	SF3B1	100	96.628	Pteropus_vampyrus
ENSXETG00000013339	sf3b1	100	91.109	ENSPNYG00000014939	sf3b1	100	91.109	Pundamilia_nyererei
ENSXETG00000013339	sf3b1	100	92.477	ENSPNAG00000008288	sf3b1	100	92.553	Pygocentrus_nattereri
ENSXETG00000013339	sf3b1	100	96.628	ENSRNOG00000013516	Sf3b1	100	96.628	Rattus_norvegicus
ENSXETG00000013339	sf3b1	99	92.923	ENSRBIG00000026096	SF3B1	100	92.923	Rhinopithecus_bieti
ENSXETG00000013339	sf3b1	100	96.628	ENSRROG00000031308	SF3B1	100	96.628	Rhinopithecus_roxellana
ENSXETG00000013339	sf3b1	100	96.628	ENSSBOG00000020080	SF3B1	100	96.628	Saimiri_boliviensis_boliviensis
ENSXETG00000013339	sf3b1	100	96.245	ENSSHAG00000017564	SF3B1	100	96.245	Sarcophilus_harrisii
ENSXETG00000013339	sf3b1	100	92.711	ENSSFOG00015021535	sf3b1	100	92.938	Scleropages_formosus
ENSXETG00000013339	sf3b1	99	91.439	ENSSMAG00000013977	sf3b1	99	91.439	Scophthalmus_maximus
ENSXETG00000013339	sf3b1	100	92.021	ENSSDUG00000017422	sf3b1	100	92.021	Seriola_dumerili
ENSXETG00000013339	sf3b1	100	91.945	ENSSLDG00000019495	sf3b1	100	91.945	Seriola_lalandi_dorsalis
ENSXETG00000013339	sf3b1	76	99.824	ENSSARG00000007016	SF3B1	76	99.824	Sorex_araneus
ENSXETG00000013339	sf3b1	100	96.396	ENSSPUG00000000410	SF3B1	100	96.396	Sphenodon_punctatus
ENSXETG00000013339	sf3b1	100	92.173	ENSSPAG00000010451	sf3b1	99	92.173	Stegastes_partitus
ENSXETG00000013339	sf3b1	91	95.966	ENSSSCG00000016075	SF3B1	100	97.755	Sus_scrofa
ENSXETG00000013339	sf3b1	100	96.702	ENSTGUG00000010553	SF3B1	100	96.702	Taeniopygia_guttata
ENSXETG00000013339	sf3b1	100	91.945	ENSTRUG00000015534	sf3b1	100	91.945	Takifugu_rubripes
ENSXETG00000013339	sf3b1	87	98.345	ENSTBEG00000008714	SF3B1	93	98.345	Tupaia_belangeri
ENSXETG00000013339	sf3b1	92	93.047	ENSTTRG00000003414	SF3B1	92	93.047	Tursiops_truncatus
ENSXETG00000013339	sf3b1	99	81.191	ENSUAMG00000018506	SF3B1	99	98.988	Ursus_americanus
ENSXETG00000013339	sf3b1	100	96.628	ENSUMAG00000020945	SF3B1	100	96.628	Ursus_maritimus
ENSXETG00000013339	sf3b1	100	88.659	ENSVPAG00000005798	SF3B1	100	88.659	Vicugna_pacos
ENSXETG00000013339	sf3b1	100	96.628	ENSVVUG00000025948	SF3B1	95	96.628	Vulpes_vulpes
ENSXETG00000013339	sf3b1	100	89.220	ENSXCOG00000018086	sf3b1	100	89.033	Xiphophorus_couchianus
ENSXETG00000013339	sf3b1	100	92.103	ENSXMAG00000007369	sf3b1	100	92.308	Xiphophorus_maculatus