EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000013602 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: -
Full Name: UPF1 regulator of nonsense transcripts homolog
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 23587 bases
Position: chrGL173046.1:164609-188195
Accession: XB-GENE-6258022
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000029819	UPF1_Zn_bind	PF09416.10	4.2e-75	1	1
ENSXETP00000029819	ResIII	PF04851.15	1.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000061144	-	1731	-	ENSXETP00000063699	576 (aa)	-	F7D6E2
ENSXETT00000029819	-	3231	-	ENSXETP00000029819	1076 (aa)	-	F6VP39

Gene Model

Click here to download ENSXETG00000013602's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000013602's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000013602	upf1	100	82.379	ENSG00000005007	UPF1	100	82.379	Homo_sapiens
ENSXETG00000013602	upf1	100	79.736	ENSAPOG00000010916	-	100	79.736	Acanthochromis_polyacanthus
ENSXETG00000013602	upf1	100	78.421	ENSAPOG00000023773	upf1	100	78.957	Acanthochromis_polyacanthus
ENSXETG00000013602	upf1	100	81.430	ENSAMEG00000011474	UPF1	100	82.234	Ailuropoda_melanoleuca
ENSXETG00000013602	upf1	91	80.192	ENSACIG00000010985	-	100	80.481	Amphilophus_citrinellus
ENSXETG00000013602	upf1	100	78.943	ENSACIG00000019949	upf1	100	79.104	Amphilophus_citrinellus
ENSXETG00000013602	upf1	100	78.174	ENSAOCG00000018519	upf1	100	78.957	Amphiprion_ocellaris
ENSXETG00000013602	upf1	100	79.736	ENSAOCG00000006352	-	100	79.736	Amphiprion_ocellaris
ENSXETG00000013602	upf1	100	79.736	ENSAPEG00000006292	-	100	79.736	Amphiprion_percula
ENSXETG00000013602	upf1	100	78.174	ENSAPEG00000016344	upf1	100	78.957	Amphiprion_percula
ENSXETG00000013602	upf1	100	79.912	ENSATEG00000016606	-	100	79.912	Anabas_testudineus
ENSXETG00000013602	upf1	100	77.461	ENSATEG00000017867	upf1	100	78.733	Anabas_testudineus
ENSXETG00000013602	upf1	93	84.295	ENSAPLG00000009175	UPF1	99	84.295	Anas_platyrhynchos
ENSXETG00000013602	upf1	93	82.275	ENSANAG00000024107	UPF1	95	82.275	Aotus_nancymaae
ENSXETG00000013602	upf1	100	78.678	ENSACLG00000007181	upf1	100	78.841	Astatotilapia_calliptera
ENSXETG00000013602	upf1	100	79.383	ENSACLG00000022630	-	100	79.383	Astatotilapia_calliptera
ENSXETG00000013602	upf1	100	80.106	ENSAMXG00000042187	upf1	100	80.722	Astyanax_mexicanus
ENSXETG00000013602	upf1	100	81.163	ENSBTAG00000020922	UPF1	100	82.731	Bos_taurus
ENSXETG00000013602	upf1	76	47.892	WBGene00004880	smg-2	75	47.892	Caenorhabditis_elegans
ENSXETG00000013602	upf1	100	82.379	ENSCJAG00000019627	UPF1	100	82.379	Callithrix_jacchus
ENSXETG00000013602	upf1	100	82.643	ENSCAFG00000014578	UPF1	100	82.643	Canis_familiaris
ENSXETG00000013602	upf1	100	82.467	ENSCAFG00020012347	UPF1	100	82.467	Canis_lupus_dingo
ENSXETG00000013602	upf1	100	82.291	ENSCHIG00000011018	UPF1	100	82.555	Capra_hircus
ENSXETG00000013602	upf1	93	83.412	ENSTSYG00000008877	UPF1	99	82.817	Carlito_syrichta
ENSXETG00000013602	upf1	93	83.318	ENSCAPG00000005758	UPF1	95	83.318	Cavia_aperea
ENSXETG00000013602	upf1	100	81.586	ENSCPOG00000025463	UPF1	100	81.410	Cavia_porcellus
ENSXETG00000013602	upf1	100	82.203	ENSCCAG00000032175	UPF1	100	82.291	Cebus_capucinus
ENSXETG00000013602	upf1	92	83.635	ENSCATG00000040306	UPF1	98	83.650	Cercocebus_atys
ENSXETG00000013602	upf1	95	81.785	ENSCLAG00000004037	UPF1	99	83.507	Chinchilla_lanigera
ENSXETG00000013602	upf1	100	82.203	ENSCSAG00000005276	UPF1	100	82.203	Chlorocebus_sabaeus
ENSXETG00000013602	upf1	100	82.250	ENSCPBG00000012513	UPF1	100	82.337	Chrysemys_picta_bellii
ENSXETG00000013602	upf1	72	75.412	ENSCING00000021399	-	88	75.445	Ciona_intestinalis
ENSXETG00000013602	upf1	99	63.034	ENSCSAVG00000006533	-	99	63.112	Ciona_savignyi
ENSXETG00000013602	upf1	93	83.602	ENSCANG00000029819	UPF1	97	83.602	Colobus_angolensis_palliatus
ENSXETG00000013602	upf1	100	81.762	ENSCGRG00001021067	Upf1	100	81.850	Cricetulus_griseus_chok1gshd
ENSXETG00000013602	upf1	93	83.318	ENSCGRG00000013480	Upf1	98	83.318	Cricetulus_griseus_crigri
ENSXETG00000013602	upf1	100	79.736	ENSCSEG00000016159	-	100	79.736	Cynoglossus_semilaevis
ENSXETG00000013602	upf1	91	91.805	ENSCSEG00000017239	upf1	86	91.805	Cynoglossus_semilaevis
ENSXETG00000013602	upf1	100	80.000	ENSCVAG00000010561	upf1	100	80.000	Cyprinodon_variegatus
ENSXETG00000013602	upf1	100	80.194	ENSDARG00000016302	upf1	100	80.810	Danio_rerio
ENSXETG00000013602	upf1	96	79.301	ENSDORG00000009984	Upf1	97	80.074	Dipodomys_ordii
ENSXETG00000013602	upf1	73	69.162	FBgn0030354	Upf1	63	69.036	Drosophila_melanogaster
ENSXETG00000013602	upf1	59	83.518	ENSEBUG00000010069	upf1	96	83.201	Eptatretus_burgeri
ENSXETG00000013602	upf1	100	80.903	ENSEASG00005006549	UPF1	100	82.379	Equus_asinus_asinus
ENSXETG00000013602	upf1	100	80.903	ENSECAG00000010639	UPF1	100	82.379	Equus_caballus
ENSXETG00000013602	upf1	100	78.177	ENSELUG00000020917	upf1	100	77.972	Esox_lucius
ENSXETG00000013602	upf1	100	79.422	ENSELUG00000012916	-	100	79.422	Esox_lucius
ENSXETG00000013602	upf1	100	82.643	ENSFCAG00000009757	UPF1	100	82.643	Felis_catus
ENSXETG00000013602	upf1	93	83.600	ENSFALG00000009312	UPF1	96	83.600	Ficedula_albicollis
ENSXETG00000013602	upf1	94	82.772	ENSFDAG00000014816	UPF1	99	83.412	Fukomys_damarensis
ENSXETG00000013602	upf1	84	92.233	ENSFHEG00000016276	-	96	92.233	Fundulus_heteroclitus
ENSXETG00000013602	upf1	100	76.465	ENSFHEG00000006428	upf1	100	76.178	Fundulus_heteroclitus
ENSXETG00000013602	upf1	100	79.137	ENSGMOG00000007541	upf1	100	79.577	Gadus_morhua
ENSXETG00000013602	upf1	100	82.555	ENSGALG00000003220	UPF1	100	82.643	Gallus_gallus
ENSXETG00000013602	upf1	60	76.522	ENSGAFG00000015443	-	89	76.522	Gambusia_affinis
ENSXETG00000013602	upf1	100	79.559	ENSGAFG00000004831	upf1	100	79.559	Gambusia_affinis
ENSXETG00000013602	upf1	100	82.203	ENSGAGG00000022217	UPF1	100	82.555	Gopherus_agassizii
ENSXETG00000013602	upf1	93	83.412	ENSGGOG00000002608	UPF1	99	83.412	Gorilla_gorilla
ENSXETG00000013602	upf1	81	100.000	ENSHBUG00000008939	upf1	86	100.000	Haplochromis_burtoni
ENSXETG00000013602	upf1	85	85.393	ENSHBUG00000014694	upf1	92	85.393	Haplochromis_burtoni
ENSXETG00000013602	upf1	100	82.026	ENSHGLG00000010900	UPF1	100	82.026	Heterocephalus_glaber_female
ENSXETG00000013602	upf1	96	82.173	ENSHGLG00100005904	UPF1	97	83.794	Heterocephalus_glaber_male
ENSXETG00000013602	upf1	100	78.678	ENSHCOG00000008918	upf1	100	79.580	Hippocampus_comes
ENSXETG00000013602	upf1	100	80.282	ENSIPUG00000005108	UPF1	100	80.898	Ictalurus_punctatus
ENSXETG00000013602	upf1	100	82.115	ENSSTOG00000009196	UPF1	100	82.203	Ictidomys_tridecemlineatus
ENSXETG00000013602	upf1	100	81.498	ENSJJAG00000023151	Upf1	100	81.938	Jaculus_jaculus
ENSXETG00000013602	upf1	100	79.912	ENSKMAG00000004962	upf1	100	79.912	Kryptolebias_marmoratus
ENSXETG00000013602	upf1	100	77.304	ENSLBEG00000014862	upf1	100	78.261	Labrus_bergylta
ENSXETG00000013602	upf1	100	79.736	ENSLBEG00000027848	-	100	79.736	Labrus_bergylta
ENSXETG00000013602	upf1	59	77.253	ENSLACG00000008482	UPF1	100	77.253	Latimeria_chalumnae
ENSXETG00000013602	upf1	100	81.850	ENSLOCG00000002072	upf1	100	81.850	Lepisosteus_oculatus
ENSXETG00000013602	upf1	100	81.674	ENSLAFG00000014963	UPF1	100	82.115	Loxodonta_africana
ENSXETG00000013602	upf1	100	82.379	ENSMFAG00000037748	UPF1	100	82.379	Macaca_fascicularis
ENSXETG00000013602	upf1	100	82.379	ENSMMUG00000023286	UPF1	100	82.379	Macaca_mulatta
ENSXETG00000013602	upf1	100	82.379	ENSMNEG00000000046	UPF1	100	82.379	Macaca_nemestrina
ENSXETG00000013602	upf1	93	83.602	ENSMLEG00000028404	UPF1	99	83.602	Mandrillus_leucophaeus
ENSXETG00000013602	upf1	100	77.431	ENSMAMG00000006229	upf1	100	78.559	Mastacembelus_armatus
ENSXETG00000013602	upf1	100	79.471	ENSMAMG00000006231	-	100	79.471	Mastacembelus_armatus
ENSXETG00000013602	upf1	100	77.768	ENSMZEG00005003489	upf1	100	78.640	Maylandia_zebra
ENSXETG00000013602	upf1	100	79.383	ENSMZEG00005016386	-	100	79.383	Maylandia_zebra
ENSXETG00000013602	upf1	93	83.617	ENSMGAG00000004745	UPF1	100	83.617	Meleagris_gallopavo
ENSXETG00000013602	upf1	94	82.463	ENSMAUG00000011398	Upf1	96	82.463	Mesocricetus_auratus
ENSXETG00000013602	upf1	100	82.026	ENSMICG00000001659	UPF1	100	82.026	Microcebus_murinus
ENSXETG00000013602	upf1	100	81.850	ENSMOCG00000005699	Upf1	100	81.938	Microtus_ochrogaster
ENSXETG00000013602	upf1	93	82.302	ENSMMOG00000007537	-	99	82.302	Mola_mola
ENSXETG00000013602	upf1	100	77.797	ENSMMOG00000007881	upf1	100	78.345	Mola_mola
ENSXETG00000013602	upf1	100	82.410	ENSMODG00000003689	UPF1	100	82.601	Monodelphis_domestica
ENSXETG00000013602	upf1	100	78.062	ENSMALG00000000144	upf1	100	78.590	Monopterus_albus
ENSXETG00000013602	upf1	100	78.207	ENSMALG00000018100	-	100	78.207	Monopterus_albus
ENSXETG00000013602	upf1	100	81.850	MGP_CAROLIEiJ_G0031142	Upf1	100	81.938	Mus_caroli
ENSXETG00000013602	upf1	100	81.850	ENSMUSG00000058301	Upf1	100	81.938	Mus_musculus
ENSXETG00000013602	upf1	100	81.850	MGP_PahariEiJ_G0021607	Upf1	100	81.938	Mus_pahari
ENSXETG00000013602	upf1	100	81.850	MGP_SPRETEiJ_G0032260	Upf1	100	81.938	Mus_spretus
ENSXETG00000013602	upf1	100	82.467	ENSMPUG00000015516	UPF1	100	82.467	Mustela_putorius_furo
ENSXETG00000013602	upf1	99	82.228	ENSMLUG00000012122	UPF1	99	82.099	Myotis_lucifugus
ENSXETG00000013602	upf1	100	82.026	ENSNGAG00000024107	Upf1	100	82.115	Nannospalax_galili
ENSXETG00000013602	upf1	100	77.358	ENSNBRG00000022069	-	100	79.291	Neolamprologus_brichardi
ENSXETG00000013602	upf1	100	77.265	ENSNBRG00000000670	upf1	100	77.768	Neolamprologus_brichardi
ENSXETG00000013602	upf1	93	77.820	ENSNLEG00000006062	UPF1	99	77.820	Nomascus_leucogenys
ENSXETG00000013602	upf1	83	66.406	ENSMEUG00000014146	-	83	66.406	Notamacropus_eugenii
ENSXETG00000013602	upf1	93	75.924	ENSOPRG00000014018	UPF1	99	75.924	Ochotona_princeps
ENSXETG00000013602	upf1	100	81.586	ENSODEG00000012426	UPF1	100	81.586	Octodon_degus
ENSXETG00000013602	upf1	100	79.471	ENSONIG00000012729	-	100	79.471	Oreochromis_niloticus
ENSXETG00000013602	upf1	100	78.204	ENSONIG00000010452	upf1	100	79.076	Oreochromis_niloticus
ENSXETG00000013602	upf1	100	82.146	ENSOANG00000004568	UPF1	100	82.146	Ornithorhynchus_anatinus
ENSXETG00000013602	upf1	100	79.559	ENSORLG00000008453	upf1	100	79.559	Oryzias_latipes
ENSXETG00000013602	upf1	100	79.559	ENSORLG00020014758	upf1	100	79.559	Oryzias_latipes_hni
ENSXETG00000013602	upf1	100	79.559	ENSORLG00015010165	upf1	100	79.559	Oryzias_latipes_hsok
ENSXETG00000013602	upf1	100	79.824	ENSOMEG00000003665	upf1	100	79.824	Oryzias_melastigma
ENSXETG00000013602	upf1	100	82.291	ENSOGAG00000012866	UPF1	100	82.291	Otolemur_garnettii
ENSXETG00000013602	upf1	96	81.577	ENSOARG00000010739	UPF1	100	81.668	Ovis_aries
ENSXETG00000013602	upf1	93	83.602	ENSPPAG00000043884	UPF1	96	83.602	Pan_paniscus
ENSXETG00000013602	upf1	100	82.643	ENSPPRG00000023470	UPF1	100	82.643	Panthera_pardus
ENSXETG00000013602	upf1	93	84.860	ENSPTIG00000010159	UPF1	100	84.860	Panthera_tigris_altaica
ENSXETG00000013602	upf1	100	82.379	ENSPTRG00000010721	UPF1	100	82.379	Pan_troglodytes
ENSXETG00000013602	upf1	100	82.379	ENSPANG00000008847	UPF1	100	82.379	Papio_anubis
ENSXETG00000013602	upf1	96	77.645	ENSPKIG00000006069	upf1	99	77.645	Paramormyrops_kingsleyae
ENSXETG00000013602	upf1	66	80.446	ENSPSIG00000009491	UPF1	100	80.446	Pelodiscus_sinensis
ENSXETG00000013602	upf1	100	76.383	ENSPMGG00000017327	upf1	100	76.687	Periophthalmus_magnuspinnatus
ENSXETG00000013602	upf1	100	81.938	ENSPEMG00000001085	Upf1	100	82.026	Peromyscus_maniculatus_bairdii
ENSXETG00000013602	upf1	100	74.494	ENSPMAG00000001206	upf1	100	74.494	Petromyzon_marinus
ENSXETG00000013602	upf1	100	82.379	ENSPCIG00000006156	UPF1	100	82.819	Phascolarctos_cinereus
ENSXETG00000013602	upf1	100	79.648	ENSPLAG00000016232	-	100	79.648	Poecilia_latipinna
ENSXETG00000013602	upf1	100	77.380	ENSPLAG00000018155	-	100	77.380	Poecilia_latipinna
ENSXETG00000013602	upf1	100	79.736	ENSPMEG00000016319	-	100	79.736	Poecilia_mexicana
ENSXETG00000013602	upf1	100	77.836	ENSPMEG00000011443	-	100	77.836	Poecilia_mexicana
ENSXETG00000013602	upf1	100	79.471	ENSPREG00000011247	-	100	79.471	Poecilia_reticulata
ENSXETG00000013602	upf1	100	76.977	ENSPREG00000009940	upf1	100	77.467	Poecilia_reticulata
ENSXETG00000013602	upf1	100	80.000	ENSPPYG00000009752	UPF1	100	80.000	Pongo_abelii
ENSXETG00000013602	upf1	68	100.000	ENSPCAG00000012962	UPF1	66	100.000	Procavia_capensis
ENSXETG00000013602	upf1	100	82.467	ENSPCOG00000023813	UPF1	100	82.467	Propithecus_coquereli
ENSXETG00000013602	upf1	72	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSXETG00000013602	upf1	100	79.383	ENSPNYG00000016731	-	100	79.383	Pundamilia_nyererei
ENSXETG00000013602	upf1	100	77.768	ENSPNYG00000003694	upf1	100	78.640	Pundamilia_nyererei
ENSXETG00000013602	upf1	100	80.106	ENSPNAG00000025614	upf1	100	80.722	Pygocentrus_nattereri
ENSXETG00000013602	upf1	100	81.850	ENSRNOG00000020134	Upf1	100	81.938	Rattus_norvegicus
ENSXETG00000013602	upf1	93	81.232	ENSRBIG00000013894	UPF1	98	81.681	Rhinopithecus_bieti
ENSXETG00000013602	upf1	93	83.602	ENSRROG00000040935	UPF1	97	83.602	Rhinopithecus_roxellana
ENSXETG00000013602	upf1	61	55.606	YMR080C	NAM7	68	54.720	Saccharomyces_cerevisiae
ENSXETG00000013602	upf1	92	83.586	ENSSBOG00000023632	UPF1	98	82.070	Saimiri_boliviensis_boliviensis
ENSXETG00000013602	upf1	93	83.917	ENSSHAG00000010499	UPF1	100	83.917	Sarcophilus_harrisii
ENSXETG00000013602	upf1	100	82.115	ENSSFOG00015021095	upf1	100	82.115	Scleropages_formosus
ENSXETG00000013602	upf1	100	76.870	ENSSMAG00000005055	upf1	100	77.826	Scophthalmus_maximus
ENSXETG00000013602	upf1	100	79.736	ENSSMAG00000021018	-	100	79.736	Scophthalmus_maximus
ENSXETG00000013602	upf1	100	77.691	ENSSDUG00000013320	upf1	100	78.819	Seriola_dumerili
ENSXETG00000013602	upf1	100	80.000	ENSSDUG00000009629	-	100	80.000	Seriola_dumerili
ENSXETG00000013602	upf1	100	78.371	ENSSLDG00000020868	upf1	100	79.021	Seriola_lalandi_dorsalis
ENSXETG00000013602	upf1	100	80.000	ENSSLDG00000006878	-	100	80.000	Seriola_lalandi_dorsalis
ENSXETG00000013602	upf1	100	82.291	ENSSPUG00000010538	UPF1	100	82.379	Sphenodon_punctatus
ENSXETG00000013602	upf1	100	79.119	ENSSPAG00000011521	-	100	79.559	Stegastes_partitus
ENSXETG00000013602	upf1	100	76.585	ENSSPAG00000000003	upf1	100	76.977	Stegastes_partitus
ENSXETG00000013602	upf1	100	81.163	ENSSSCG00000039301	UPF1	100	83.459	Sus_scrofa
ENSXETG00000013602	upf1	77	80.372	ENSTGUG00000001057	UPF1	100	93.411	Taeniopygia_guttata
ENSXETG00000013602	upf1	100	78.081	ENSTRUG00000000150	upf1	100	77.661	Takifugu_rubripes
ENSXETG00000013602	upf1	100	78.678	ENSTRUG00000005131	-	100	78.678	Takifugu_rubripes
ENSXETG00000013602	upf1	100	78.364	ENSTTRG00000011544	UPF1	100	78.767	Tursiops_truncatus
ENSXETG00000013602	upf1	100	82.555	ENSUAMG00000007093	UPF1	100	82.555	Ursus_americanus
ENSXETG00000013602	upf1	94	82.945	ENSUMAG00000006652	UPF1	99	83.633	Ursus_maritimus
ENSXETG00000013602	upf1	100	82.467	ENSVVUG00000007797	UPF1	100	82.467	Vulpes_vulpes
ENSXETG00000013602	upf1	97	76.958	ENSXCOG00000015275	-	96	76.958	Xiphophorus_couchianus
ENSXETG00000013602	upf1	92	80.670	ENSXCOG00000005764	-	100	80.670	Xiphophorus_couchianus
ENSXETG00000013602	upf1	100	77.621	ENSXMAG00000001703	-	100	77.621	Xiphophorus_maculatus
ENSXETG00000013602	upf1	100	79.648	ENSXMAG00000002540	-	100	79.648	Xiphophorus_maculatus