EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000013683 (Gene tree)
Gene ID: -
Gene Symbol: rrp1b
Alias: -
Full Name: ribosomal RNA processing 1B
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 10633 bases
Position: chrGL173720.1:148059-158691
Accession: XB-GENE-5721102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000029944	Nop52	PF05997.12	1.7e-67	1	1
ENSXETP00000063465	Nop52	PF05997.12	1.8e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000029944	-	1809	-	ENSXETP00000029944	602 (aa)	-	F6R0J3
ENSXETT00000064192	-	1824	-	ENSXETP00000063465	608 (aa)	-	F7D053

Gene Model

Click here to download ENSXETG00000013683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000013683's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000013683	rrp1b	66	47.181	ENSG00000160208	RRP1B	60	46.903	Homo_sapiens
ENSXETG00000013683	rrp1b	70	46.087	ENSAPOG00000007490	-	50	46.479	Acanthochromis_polyacanthus
ENSXETG00000013683	rrp1b	65	46.497	ENSAMEG00000011401	RRP1B	61	46.178	Ailuropoda_melanoleuca
ENSXETG00000013683	rrp1b	74	45.714	ENSAOCG00000017894	-	99	46.996	Amphiprion_ocellaris
ENSXETG00000013683	rrp1b	81	45.349	ENSAPEG00000024150	-	50	44.663	Amphiprion_percula
ENSXETG00000013683	rrp1b	65	55.172	ENSAPLG00000004310	RRP1B	60	54.671	Anas_platyrhynchos
ENSXETG00000013683	rrp1b	66	55.696	ENSACAG00000017851	RRP1B	57	54.969	Anolis_carolinensis
ENSXETG00000013683	rrp1b	81	46.291	ENSANAG00000034889	RRP1B	63	45.723	Aotus_nancymaae
ENSXETG00000013683	rrp1b	53	50.867	ENSANAG00000037815	RRP1	77	48.844	Aotus_nancymaae
ENSXETG00000013683	rrp1b	67	50.943	ENSBTAG00000017418	RRP1B	60	51.402	Bos_taurus
ENSXETG00000013683	rrp1b	66	46.291	ENSCJAG00000017077	RRP1B	56	50.000	Callithrix_jacchus
ENSXETG00000013683	rrp1b	83	41.221	ENSCAFG00000010621	RRP1B	55	49.020	Canis_familiaris
ENSXETG00000013683	rrp1b	67	46.933	ENSCAFG00020018901	RRP1B	59	49.057	Canis_lupus_dingo
ENSXETG00000013683	rrp1b	84	49.057	ENSCHIG00000021519	RRP1B	59	49.057	Capra_hircus
ENSXETG00000013683	rrp1b	53	50.716	ENSTSYG00000012831	RRP1	74	49.713	Carlito_syrichta
ENSXETG00000013683	rrp1b	73	43.109	ENSCPOG00000002396	RRP1B	64	43.902	Cavia_porcellus
ENSXETG00000013683	rrp1b	50	50.309	ENSCPOG00000038986	RRP1	79	47.606	Cavia_porcellus
ENSXETG00000013683	rrp1b	61	46.482	ENSCCAG00000029828	RRP1	70	51.713	Cebus_capucinus
ENSXETG00000013683	rrp1b	93	40.887	ENSCCAG00000029384	RRP1B	66	45.082	Cebus_capucinus
ENSXETG00000013683	rrp1b	81	46.884	ENSCATG00000017423	RRP1B	60	46.608	Cercocebus_atys
ENSXETG00000013683	rrp1b	69	46.012	ENSCLAG00000005622	RRP1B	60	45.370	Chinchilla_lanigera
ENSXETG00000013683	rrp1b	66	47.181	ENSCSAG00000007961	RRP1B	60	46.903	Chlorocebus_sabaeus
ENSXETG00000013683	rrp1b	50	40.717	ENSCHOG00000002426	-	53	40.453	Choloepus_hoffmanni
ENSXETG00000013683	rrp1b	71	56.037	ENSCPBG00000010310	RRP1B	71	47.525	Chrysemys_picta_bellii
ENSXETG00000013683	rrp1b	63	50.000	ENSCANG00000040952	RRP1B	60	46.608	Colobus_angolensis_palliatus
ENSXETG00000013683	rrp1b	66	51.020	ENSCGRG00001023882	-	60	64.706	Cricetulus_griseus_chok1gshd
ENSXETG00000013683	rrp1b	66	51.020	ENSCGRG00001010889	-	62	45.902	Cricetulus_griseus_chok1gshd
ENSXETG00000013683	rrp1b	60	51.020	ENSCGRG00000001553	Rrp1b	59	45.238	Cricetulus_griseus_crigri
ENSXETG00000013683	rrp1b	98	36.378	ENSCSEG00000020711	-	71	56.140	Cynoglossus_semilaevis
ENSXETG00000013683	rrp1b	57	43.784	ENSCVAG00000017568	-	93	43.850	Cyprinodon_variegatus
ENSXETG00000013683	rrp1b	68	50.164	ENSDARG00000103337	rrp1	61	49.196	Danio_rerio
ENSXETG00000013683	rrp1b	64	49.038	ENSDNOG00000032774	RRP1B	57	49.038	Dasypus_novemcinctus
ENSXETG00000013683	rrp1b	51	48.138	ENSDNOG00000019880	RRP1	78	47.989	Dasypus_novemcinctus
ENSXETG00000013683	rrp1b	60	44.718	ENSDORG00000005496	Rrp1b	61	45.714	Dipodomys_ordii
ENSXETG00000013683	rrp1b	56	68.085	ENSETEG00000019489	RRP1B	51	66.667	Echinops_telfairi
ENSXETG00000013683	rrp1b	67	51.064	ENSEASG00005001687	RRP1B	57	51.064	Equus_asinus_asinus
ENSXETG00000013683	rrp1b	50	49.847	ENSEASG00005001673	RRP1	74	51.376	Equus_asinus_asinus
ENSXETG00000013683	rrp1b	65	51.064	ENSECAG00000018018	RRP1B	57	50.000	Equus_caballus
ENSXETG00000013683	rrp1b	50	49.541	ENSECAG00000015703	RRP1	73	51.703	Equus_caballus
ENSXETG00000013683	rrp1b	78	40.888	ENSELUG00000015885	-	90	45.988	Esox_lucius
ENSXETG00000013683	rrp1b	71	47.115	ENSFCAG00000010272	RRP1B	60	46.602	Felis_catus
ENSXETG00000013683	rrp1b	61	52.222	ENSFALG00000002024	RRP1B	55	51.111	Ficedula_albicollis
ENSXETG00000013683	rrp1b	61	44.340	ENSFDAG00000010899	RRP1B	56	44.444	Fukomys_damarensis
ENSXETG00000013683	rrp1b	69	45.087	ENSGMOG00000001953	-	68	45.640	Gadus_morhua
ENSXETG00000013683	rrp1b	70	53.731	ENSGALG00000035696	RRP1B	59	52.584	Gallus_gallus
ENSXETG00000013683	rrp1b	100	38.756	ENSGACG00000001438	rrp1	100	38.756	Gasterosteus_aculeatus
ENSXETG00000013683	rrp1b	72	54.711	ENSGAGG00000000375	RRP1B	60	54.711	Gopherus_agassizii
ENSXETG00000013683	rrp1b	66	47.181	ENSGGOG00000012069	RRP1B	60	46.903	Gorilla_gorilla
ENSXETG00000013683	rrp1b	67	45.062	ENSHGLG00000004968	RRP1B	79	45.631	Heterocephalus_glaber_female
ENSXETG00000013683	rrp1b	56	45.631	ENSHGLG00100002232	RRP1B	52	45.631	Heterocephalus_glaber_male
ENSXETG00000013683	rrp1b	75	38.443	ENSHCOG00000018388	-	62	38.537	Hippocampus_comes
ENSXETG00000013683	rrp1b	66	44.126	ENSIPUG00000000673	-	66	45.245	Ictalurus_punctatus
ENSXETG00000013683	rrp1b	70	47.041	ENSSTOG00000011790	RRP1B	64	47.368	Ictidomys_tridecemlineatus
ENSXETG00000013683	rrp1b	68	44.203	ENSSTOG00000011116	RRP1	72	54.125	Ictidomys_tridecemlineatus
ENSXETG00000013683	rrp1b	66	45.872	ENSJJAG00000021279	Rrp1b	61	45.872	Jaculus_jaculus
ENSXETG00000013683	rrp1b	67	47.429	ENSKMAG00000005539	rrp1	73	45.692	Kryptolebias_marmoratus
ENSXETG00000013683	rrp1b	64	48.148	ENSLACG00000017332	-	59	48.318	Latimeria_chalumnae
ENSXETG00000013683	rrp1b	65	51.703	ENSLOCG00000004064	-	59	49.704	Lepisosteus_oculatus
ENSXETG00000013683	rrp1b	83	32.756	ENSLAFG00000000766	RRP1B	78	47.720	Loxodonta_africana
ENSXETG00000013683	rrp1b	66	46.884	ENSMFAG00000039152	RRP1B	60	46.608	Macaca_fascicularis
ENSXETG00000013683	rrp1b	63	51.685	ENSMMUG00000000104	RRP1B	55	51.685	Macaca_mulatta
ENSXETG00000013683	rrp1b	61	47.607	ENSMNEG00000031210	RRP1	75	50.291	Macaca_nemestrina
ENSXETG00000013683	rrp1b	66	46.884	ENSMNEG00000034269	RRP1B	60	46.608	Macaca_nemestrina
ENSXETG00000013683	rrp1b	60	47.138	ENSMLEG00000040044	RRP1B	57	46.823	Mandrillus_leucophaeus
ENSXETG00000013683	rrp1b	78	45.098	ENSMAMG00000007131	-	50	45.278	Mastacembelus_armatus
ENSXETG00000013683	rrp1b	70	53.134	ENSMGAG00000014591	RRP1B	59	52.584	Meleagris_gallopavo
ENSXETG00000013683	rrp1b	64	49.038	ENSMAUG00000021508	Rrp1b	64	44.531	Mesocricetus_auratus
ENSXETG00000013683	rrp1b	66	48.012	ENSMICG00000004686	RRP1B	62	48.012	Microcebus_murinus
ENSXETG00000013683	rrp1b	63	51.064	ENSMOCG00000001117	Rrp1b	57	51.064	Microtus_ochrogaster
ENSXETG00000013683	rrp1b	56	39.837	ENSMMOG00000019175	rrp1	92	39.237	Mola_mola
ENSXETG00000013683	rrp1b	52	50.742	ENSMODG00000021036	-	50	50.742	Monodelphis_domestica
ENSXETG00000013683	rrp1b	69	46.724	ENSMODG00000021033	RRP1B	65	45.631	Monodelphis_domestica
ENSXETG00000013683	rrp1b	56	44.231	ENSMALG00000010310	rrp1	94	44.353	Monopterus_albus
ENSXETG00000013683	rrp1b	63	54.651	MGP_CAROLIEiJ_G0015508	Rrp1	73	52.708	Mus_caroli
ENSXETG00000013683	rrp1b	65	51.546	MGP_CAROLIEiJ_G0021376	Rrp1b	78	46.281	Mus_caroli
ENSXETG00000013683	rrp1b	63	56.098	ENSMUSG00000061032	Rrp1	69	54.651	Mus_musculus
ENSXETG00000013683	rrp1b	64	49.485	ENSMUSG00000058392	Rrp1b	58	60.870	Mus_musculus
ENSXETG00000013683	rrp1b	63	51.064	MGP_PahariEiJ_G0023695	Rrp1b	58	60.294	Mus_pahari
ENSXETG00000013683	rrp1b	63	56.098	MGP_SPRETEiJ_G0016321	Rrp1	73	52.347	Mus_spretus
ENSXETG00000013683	rrp1b	65	48.598	MGP_SPRETEiJ_G0022290	Rrp1b	58	60.870	Mus_spretus
ENSXETG00000013683	rrp1b	86	49.235	ENSMLUG00000007738	RRP1B	57	51.546	Myotis_lucifugus
ENSXETG00000013683	rrp1b	67	46.281	ENSNGAG00000021073	Rrp1b	63	43.614	Nannospalax_galili
ENSXETG00000013683	rrp1b	66	46.884	ENSNLEG00000001490	RRP1B	62	46.608	Nomascus_leucogenys
ENSXETG00000013683	rrp1b	70	45.342	ENSODEG00000013177	RRP1B	65	44.375	Octodon_degus
ENSXETG00000013683	rrp1b	58	47.253	ENSONIG00000004264	rrp1	60	45.545	Oreochromis_niloticus
ENSXETG00000013683	rrp1b	65	46.547	ENSOANG00000006470	RRP1B	58	46.246	Ornithorhynchus_anatinus
ENSXETG00000013683	rrp1b	50	52.960	ENSOANG00000006472	-	90	49.296	Ornithorhynchus_anatinus
ENSXETG00000013683	rrp1b	59	45.794	ENSOCUG00000025931	RRP1B	58	45.794	Oryctolagus_cuniculus
ENSXETG00000013683	rrp1b	64	61.538	ENSORLG00020007199	-	50	61.538	Oryzias_latipes_hni
ENSXETG00000013683	rrp1b	70	46.237	ENSORLG00015004425	-	52	47.268	Oryzias_latipes_hsok
ENSXETG00000013683	rrp1b	65	58.182	ENSOMEG00000016910	-	53	58.182	Oryzias_melastigma
ENSXETG00000013683	rrp1b	98	39.871	ENSOGAG00000009872	RRP1B	98	39.804	Otolemur_garnettii
ENSXETG00000013683	rrp1b	63	48.113	ENSOARG00000011314	RRP1B	56	48.780	Ovis_aries
ENSXETG00000013683	rrp1b	60	47.475	ENSPPAG00000035319	RRP1B	57	46.980	Pan_paniscus
ENSXETG00000013683	rrp1b	67	46.341	ENSPPRG00000010356	RRP1B	62	44.767	Panthera_pardus
ENSXETG00000013683	rrp1b	93	36.493	ENSPTIG00000016894	RRP1B	50	45.791	Panthera_tigris_altaica
ENSXETG00000013683	rrp1b	66	47.181	ENSPTRG00000013958	RRP1B	60	46.903	Pan_troglodytes
ENSXETG00000013683	rrp1b	66	46.884	ENSPANG00000011090	RRP1B	60	46.608	Papio_anubis
ENSXETG00000013683	rrp1b	61	46.250	ENSPANG00000015097	RRP1	70	53.106	Papio_anubis
ENSXETG00000013683	rrp1b	69	46.903	ENSPKIG00000003422	-	57	46.450	Paramormyrops_kingsleyae
ENSXETG00000013683	rrp1b	66	55.728	ENSPSIG00000008152	RRP1B	57	55.319	Pelodiscus_sinensis
ENSXETG00000013683	rrp1b	78	46.407	ENSPEMG00000022490	Rrp1b	62	45.509	Peromyscus_maniculatus_bairdii
ENSXETG00000013683	rrp1b	57	69.811	ENSPCIG00000015513	RRP1B	53	69.811	Phascolarctos_cinereus
ENSXETG00000013683	rrp1b	51	52.134	ENSPCIG00000015523	-	72	51.220	Phascolarctos_cinereus
ENSXETG00000013683	rrp1b	86	47.253	ENSPFOG00000007424	-	69	47.253	Poecilia_formosa
ENSXETG00000013683	rrp1b	74	40.126	ENSPLAG00000016684	-	67	39.916	Poecilia_latipinna
ENSXETG00000013683	rrp1b	86	47.253	ENSPMEG00000007042	-	66	47.253	Poecilia_mexicana
ENSXETG00000013683	rrp1b	86	47.253	ENSPREG00000015673	-	66	47.253	Poecilia_reticulata
ENSXETG00000013683	rrp1b	66	46.884	ENSPPYG00000011470	RRP1B	60	46.608	Pongo_abelii
ENSXETG00000013683	rrp1b	71	48.318	ENSPCOG00000017927	RRP1B	62	48.318	Propithecus_coquereli
ENSXETG00000013683	rrp1b	63	52.128	ENSRNOG00000001194	Rrp1b	64	46.610	Rattus_norvegicus
ENSXETG00000013683	rrp1b	63	50.000	ENSRBIG00000041689	RRP1B	55	50.000	Rhinopithecus_bieti
ENSXETG00000013683	rrp1b	63	50.000	ENSRROG00000031499	RRP1B	60	46.608	Rhinopithecus_roxellana
ENSXETG00000013683	rrp1b	75	43.344	ENSSBOG00000034727	RRP1B	50	55.615	Saimiri_boliviensis_boliviensis
ENSXETG00000013683	rrp1b	69	47.214	ENSSHAG00000017789	RRP1B	62	47.801	Sarcophilus_harrisii
ENSXETG00000013683	rrp1b	63	45.055	ENSSFOG00015003932	-	61	43.169	Scleropages_formosus
ENSXETG00000013683	rrp1b	71	44.772	ENSSMAG00000016847	-	81	45.231	Scophthalmus_maximus
ENSXETG00000013683	rrp1b	71	44.828	ENSSDUG00000000551	-	52	44.947	Seriola_dumerili
ENSXETG00000013683	rrp1b	71	44.562	ENSSLDG00000002538	-	52	44.681	Seriola_lalandi_dorsalis
ENSXETG00000013683	rrp1b	59	48.669	ENSSARG00000003108	-	57	48.669	Sorex_araneus
ENSXETG00000013683	rrp1b	83	46.602	ENSSPUG00000002834	RRP1B	68	46.602	Sphenodon_punctatus
ENSXETG00000013683	rrp1b	70	45.263	ENSSPAG00000005370	-	52	43.229	Stegastes_partitus
ENSXETG00000013683	rrp1b	68	50.467	ENSSSCG00000021698	RRP1B	61	50.467	Sus_scrofa
ENSXETG00000013683	rrp1b	61	52.941	ENSTGUG00000005926	RRP1B	59	53.287	Taeniopygia_guttata
ENSXETG00000013683	rrp1b	50	46.646	ENSTRUG00000017592	rrp1	93	45.427	Takifugu_rubripes
ENSXETG00000013683	rrp1b	97	38.599	ENSTNIG00000005053	rrp1	69	48.580	Tetraodon_nigroviridis
ENSXETG00000013683	rrp1b	93	34.579	ENSTBEG00000000422	RRP1B	72	47.719	Tupaia_belangeri
ENSXETG00000013683	rrp1b	65	45.963	ENSTTRG00000000723	RRP1B	59	45.963	Tursiops_truncatus
ENSXETG00000013683	rrp1b	59	46.154	ENSUMAG00000025510	RRP1B	80	46.825	Ursus_maritimus
ENSXETG00000013683	rrp1b	60	47.203	ENSVVUG00000024509	RRP1B	55	49.020	Vulpes_vulpes
ENSXETG00000013683	rrp1b	84	51.471	ENSXMAG00000023123	-	55	51.471	Xiphophorus_maculatus