EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000013795 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 11170 bases
Position: chrGL172642.1:3106637-3117806
Accession: XB-GENE-948670
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000030208	HVSL	PF09749.9	3.4e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000030208	-	1220	-	ENSXETP00000030208	250 (aa)	-	B1WBH1

Gene Model

Click here to download ENSXETG00000013795's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000013795's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000013795	usb1	94	54.237	ENSG00000103005	USB1	95	57.635	Homo_sapiens
ENSXETG00000013795	usb1	99	50.179	ENSAPOG00000011942	usb1	77	56.221	Acanthochromis_polyacanthus
ENSXETG00000013795	usb1	89	56.502	ENSAMEG00000017205	USB1	81	56.422	Ailuropoda_melanoleuca
ENSXETG00000013795	usb1	89	56.054	ENSACIG00000012234	usb1	78	57.009	Amphilophus_citrinellus
ENSXETG00000013795	usb1	96	52.610	ENSAOCG00000014831	usb1	76	55.760	Amphiprion_ocellaris
ENSXETG00000013795	usb1	96	53.012	ENSAPEG00000000296	usb1	76	56.221	Amphiprion_percula
ENSXETG00000013795	usb1	90	54.222	ENSATEG00000009348	usb1	77	54.378	Anabas_testudineus
ENSXETG00000013795	usb1	89	60.714	ENSAPLG00000002756	USB1	97	61.187	Anas_platyrhynchos
ENSXETG00000013795	usb1	90	54.425	ENSACAG00000015481	USB1	96	54.795	Anolis_carolinensis
ENSXETG00000013795	usb1	94	53.814	ENSANAG00000035640	USB1	82	55.046	Aotus_nancymaae
ENSXETG00000013795	usb1	88	55.251	ENSACLG00000020586	usb1	75	55.399	Astatotilapia_calliptera
ENSXETG00000013795	usb1	90	57.589	ENSAMXG00000040146	usb1	73	57.273	Astyanax_mexicanus
ENSXETG00000013795	usb1	99	53.462	ENSBTAG00000015758	USB1	98	52.490	Bos_taurus
ENSXETG00000013795	usb1	94	53.814	ENSCJAG00000011733	USB1	82	55.505	Callithrix_jacchus
ENSXETG00000013795	usb1	90	56.696	ENSCAFG00000008556	USB1	58	56.621	Canis_familiaris
ENSXETG00000013795	usb1	90	56.696	ENSCAFG00020009263	USB1	82	56.621	Canis_lupus_dingo
ENSXETG00000013795	usb1	99	53.846	ENSCHIG00000024290	USB1	98	52.692	Capra_hircus
ENSXETG00000013795	usb1	89	54.709	ENSTSYG00000006997	USB1	82	55.300	Carlito_syrichta
ENSXETG00000013795	usb1	89	47.085	ENSCAPG00000009057	USB1	92	47.248	Cavia_aperea
ENSXETG00000013795	usb1	99	52.091	ENSCPOG00000014325	USB1	81	56.422	Cavia_porcellus
ENSXETG00000013795	usb1	94	54.237	ENSCCAG00000022132	USB1	82	55.505	Cebus_capucinus
ENSXETG00000013795	usb1	90	55.111	ENSCATG00000032174	USB1	82	55.505	Cercocebus_atys
ENSXETG00000013795	usb1	70	55.429	ENSCLAG00000007363	USB1	99	55.429	Chinchilla_lanigera
ENSXETG00000013795	usb1	94	53.814	ENSCSAG00000004783	USB1	82	55.505	Chlorocebus_sabaeus
ENSXETG00000013795	usb1	90	59.735	ENSCPBG00000026943	USB1	78	60.092	Chrysemys_picta_bellii
ENSXETG00000013795	usb1	80	34.450	ENSCING00000011490	-	95	32.812	Ciona_intestinalis
ENSXETG00000013795	usb1	93	31.933	ENSCSAVG00000000894	-	79	32.420	Ciona_savignyi
ENSXETG00000013795	usb1	89	54.709	ENSCANG00000037135	USB1	97	50.575	Colobus_angolensis_palliatus
ENSXETG00000013795	usb1	99	53.612	ENSCGRG00001011243	USB1	81	58.257	Cricetulus_griseus_chok1gshd
ENSXETG00000013795	usb1	99	53.612	ENSCGRG00000013252	USB1	81	58.257	Cricetulus_griseus_crigri
ENSXETG00000013795	usb1	89	54.260	ENSCSEG00000013881	usb1	78	54.378	Cynoglossus_semilaevis
ENSXETG00000013795	usb1	89	51.327	ENSCVAG00000009252	usb1	94	51.364	Cyprinodon_variegatus
ENSXETG00000013795	usb1	90	53.778	ENSDARG00000003841	usb1	79	53.670	Danio_rerio
ENSXETG00000013795	usb1	89	57.399	ENSDORG00000001888	Usb1	98	51.724	Dipodomys_ordii
ENSXETG00000013795	usb1	99	35.361	FBgn0037713	CG16790	78	38.350	Drosophila_melanogaster
ENSXETG00000013795	usb1	99	45.420	ENSETEG00000019682	USB1	81	47.248	Echinops_telfairi
ENSXETG00000013795	usb1	89	48.879	ENSEBUG00000005889	usb1	76	48.402	Eptatretus_burgeri
ENSXETG00000013795	usb1	99	53.462	ENSEASG00005005484	USB1	82	55.963	Equus_asinus_asinus
ENSXETG00000013795	usb1	99	53.077	ENSECAG00000019493	USB1	75	55.505	Equus_caballus
ENSXETG00000013795	usb1	70	47.429	ENSEEUG00000000154	USB1	65	47.977	Erinaceus_europaeus
ENSXETG00000013795	usb1	97	50.813	ENSELUG00000010974	usb1	99	46.125	Esox_lucius
ENSXETG00000013795	usb1	89	56.054	ENSFCAG00000002693	USB1	81	55.963	Felis_catus
ENSXETG00000013795	usb1	90	56.195	ENSFALG00000006876	USB1	98	51.341	Ficedula_albicollis
ENSXETG00000013795	usb1	99	52.672	ENSFDAG00000010052	USB1	81	56.881	Fukomys_damarensis
ENSXETG00000013795	usb1	85	51.818	ENSFHEG00000012334	usb1	73	55.435	Fundulus_heteroclitus
ENSXETG00000013795	usb1	89	53.812	ENSGMOG00000004228	usb1	96	53.917	Gadus_morhua
ENSXETG00000013795	usb1	89	58.744	ENSGALG00000035604	USB1	98	55.777	Gallus_gallus
ENSXETG00000013795	usb1	95	52.653	ENSGAFG00000021890	usb1	77	55.399	Gambusia_affinis
ENSXETG00000013795	usb1	89	53.125	ENSGACG00000003257	usb1	73	55.392	Gasterosteus_aculeatus
ENSXETG00000013795	usb1	99	54.478	ENSGAGG00000022572	USB1	79	60.092	Gopherus_agassizii
ENSXETG00000013795	usb1	94	53.814	ENSGGOG00000017147	USB1	82	55.505	Gorilla_gorilla
ENSXETG00000013795	usb1	89	54.709	ENSHBUG00000009823	usb1	77	54.839	Haplochromis_burtoni
ENSXETG00000013795	usb1	99	52.672	ENSHGLG00000016078	USB1	79	55.963	Heterocephalus_glaber_female
ENSXETG00000013795	usb1	99	52.672	ENSHGLG00100005562	USB1	79	55.963	Heterocephalus_glaber_male
ENSXETG00000013795	usb1	87	55.300	ENSHCOG00000015633	usb1	99	51.362	Hippocampus_comes
ENSXETG00000013795	usb1	97	56.790	ENSIPUG00000008601	usb1	76	59.361	Ictalurus_punctatus
ENSXETG00000013795	usb1	94	54.237	ENSSTOG00000007548	USB1	79	55.963	Ictidomys_tridecemlineatus
ENSXETG00000013795	usb1	99	53.817	ENSJJAG00000021859	Usb1	81	58.716	Jaculus_jaculus
ENSXETG00000013795	usb1	89	52.466	ENSKMAG00000007200	usb1	76	52.535	Kryptolebias_marmoratus
ENSXETG00000013795	usb1	87	49.772	ENSLBEG00000008452	usb1	66	50.467	Labrus_bergylta
ENSXETG00000013795	usb1	80	57.214	ENSLACG00000000105	USB1	64	59.140	Latimeria_chalumnae
ENSXETG00000013795	usb1	95	56.118	ENSLOCG00000000465	usb1	77	57.798	Lepisosteus_oculatus
ENSXETG00000013795	usb1	99	45.149	ENSLAFG00000002267	USB1	80	48.416	Loxodonta_africana
ENSXETG00000013795	usb1	94	53.814	ENSMFAG00000003926	USB1	82	55.505	Macaca_fascicularis
ENSXETG00000013795	usb1	94	53.814	ENSMMUG00000022669	USB1	82	55.505	Macaca_mulatta
ENSXETG00000013795	usb1	94	53.390	ENSMNEG00000042487	USB1	82	55.046	Macaca_nemestrina
ENSXETG00000013795	usb1	94	53.814	ENSMLEG00000028756	USB1	82	55.505	Mandrillus_leucophaeus
ENSXETG00000013795	usb1	99	46.931	ENSMAMG00000015092	usb1	77	53.456	Mastacembelus_armatus
ENSXETG00000013795	usb1	88	55.251	ENSMZEG00005010008	usb1	75	55.399	Maylandia_zebra
ENSXETG00000013795	usb1	94	55.508	ENSMAUG00000007832	Usb1	81	57.339	Mesocricetus_auratus
ENSXETG00000013795	usb1	92	55.411	ENSMICG00000004900	USB1	82	56.422	Microcebus_murinus
ENSXETG00000013795	usb1	99	54.373	ENSMOCG00000022647	Usb1	81	57.798	Microtus_ochrogaster
ENSXETG00000013795	usb1	88	54.545	ENSMMOG00000000490	usb1	99	50.781	Mola_mola
ENSXETG00000013795	usb1	88	55.251	ENSMODG00000014067	USB1	81	55.251	Monodelphis_domestica
ENSXETG00000013795	usb1	89	55.157	ENSMALG00000005930	usb1	76	55.300	Monopterus_albus
ENSXETG00000013795	usb1	99	52.672	MGP_CAROLIEiJ_G0031421	Usb1	91	57.282	Mus_caroli
ENSXETG00000013795	usb1	99	52.290	ENSMUSG00000031792	Usb1	91	56.311	Mus_musculus
ENSXETG00000013795	usb1	89	56.951	MGP_PahariEiJ_G0023019	Usb1	91	57.944	Mus_pahari
ENSXETG00000013795	usb1	99	52.290	MGP_SPRETEiJ_G0032540	Usb1	81	57.339	Mus_spretus
ENSXETG00000013795	usb1	89	56.951	ENSMPUG00000004684	USB1	78	56.881	Mustela_putorius_furo
ENSXETG00000013795	usb1	89	56.502	ENSMLUG00000007400	USB1	94	56.422	Myotis_lucifugus
ENSXETG00000013795	usb1	89	57.399	ENSNGAG00000009703	Usb1	81	57.339	Nannospalax_galili
ENSXETG00000013795	usb1	86	53.738	ENSNBRG00000008747	usb1	99	53.738	Neolamprologus_brichardi
ENSXETG00000013795	usb1	89	53.153	ENSNLEG00000003340	USB1	81	54.902	Nomascus_leucogenys
ENSXETG00000013795	usb1	50	48.387	ENSMEUG00000003328	-	64	51.515	Notamacropus_eugenii
ENSXETG00000013795	usb1	94	38.983	ENSOPRG00000011803	USB1	66	57.025	Ochotona_princeps
ENSXETG00000013795	usb1	99	53.053	ENSODEG00000016214	USB1	81	57.339	Octodon_degus
ENSXETG00000013795	usb1	99	48.561	ENSONIG00000011063	usb1	77	55.300	Oreochromis_niloticus
ENSXETG00000013795	usb1	90	55.556	ENSOANG00000012118	USB1	91	55.505	Ornithorhynchus_anatinus
ENSXETG00000013795	usb1	89	54.260	ENSORLG00000012479	usb1	78	55.140	Oryzias_latipes
ENSXETG00000013795	usb1	89	54.260	ENSORLG00020018671	usb1	78	55.140	Oryzias_latipes_hni
ENSXETG00000013795	usb1	89	54.260	ENSORLG00015009679	usb1	79	55.140	Oryzias_latipes_hsok
ENSXETG00000013795	usb1	88	53.881	ENSOMEG00000012930	usb1	75	54.762	Oryzias_melastigma
ENSXETG00000013795	usb1	89	51.570	ENSOGAG00000003273	USB1	81	51.376	Otolemur_garnettii
ENSXETG00000013795	usb1	89	56.951	ENSOARG00000001107	USB1	83	56.881	Ovis_aries
ENSXETG00000013795	usb1	94	53.814	ENSPPAG00000042137	USB1	82	55.505	Pan_paniscus
ENSXETG00000013795	usb1	89	55.605	ENSPPRG00000024797	USB1	81	55.505	Panthera_pardus
ENSXETG00000013795	usb1	89	55.157	ENSPTIG00000007506	USB1	81	55.046	Panthera_tigris_altaica
ENSXETG00000013795	usb1	94	49.576	ENSPTRG00000008172	USB1	95	57.635	Pan_troglodytes
ENSXETG00000013795	usb1	94	53.814	ENSPANG00000025138	USB1	82	55.505	Papio_anubis
ENSXETG00000013795	usb1	98	52.653	ENSPKIG00000015109	usb1	73	54.587	Paramormyrops_kingsleyae
ENSXETG00000013795	usb1	89	47.321	ENSPSIG00000004305	USB1	97	47.032	Pelodiscus_sinensis
ENSXETG00000013795	usb1	89	53.571	ENSPMGG00000017725	usb1	98	50.000	Periophthalmus_magnuspinnatus
ENSXETG00000013795	usb1	94	55.508	ENSPEMG00000016183	Usb1	80	57.339	Peromyscus_maniculatus_bairdii
ENSXETG00000013795	usb1	89	50.446	ENSPMAG00000000462	usb1	92	50.228	Petromyzon_marinus
ENSXETG00000013795	usb1	88	55.251	ENSPFOG00000011130	usb1	76	55.399	Poecilia_formosa
ENSXETG00000013795	usb1	89	54.709	ENSPLAG00000009820	usb1	76	55.399	Poecilia_latipinna
ENSXETG00000013795	usb1	96	52.209	ENSPMEG00000006402	usb1	76	55.399	Poecilia_mexicana
ENSXETG00000013795	usb1	85	53.182	ENSPREG00000001047	usb1	88	44.845	Poecilia_reticulata
ENSXETG00000013795	usb1	89	51.339	ENSPPYG00000007401	USB1	81	52.913	Pongo_abelii
ENSXETG00000013795	usb1	97	53.498	ENSPCOG00000022612	USB1	82	56.422	Propithecus_coquereli
ENSXETG00000013795	usb1	99	53.150	ENSPVAG00000004613	USB1	98	51.373	Pteropus_vampyrus
ENSXETG00000013795	usb1	89	54.709	ENSPNYG00000022262	usb1	77	54.839	Pundamilia_nyererei
ENSXETG00000013795	usb1	90	56.637	ENSPNAG00000011736	usb1	74	56.621	Pygocentrus_nattereri
ENSXETG00000013795	usb1	99	52.672	ENSRNOG00000013216	Usb1	81	57.339	Rattus_norvegicus
ENSXETG00000013795	usb1	94	49.153	ENSRBIG00000044466	USB1	95	57.143	Rhinopithecus_bieti
ENSXETG00000013795	usb1	94	53.814	ENSRROG00000029211	USB1	82	55.505	Rhinopithecus_roxellana
ENSXETG00000013795	usb1	94	54.237	ENSSBOG00000029362	USB1	82	55.505	Saimiri_boliviensis_boliviensis
ENSXETG00000013795	usb1	87	56.881	ENSSHAG00000006993	USB1	86	56.881	Sarcophilus_harrisii
ENSXETG00000013795	usb1	98	53.629	ENSSFOG00015023663	usb1	67	57.944	Scleropages_formosus
ENSXETG00000013795	usb1	89	53.165	ENSSMAG00000015834	usb1	78	53.247	Scophthalmus_maximus
ENSXETG00000013795	usb1	89	56.054	ENSSDUG00000002949	usb1	88	55.303	Seriola_dumerili
ENSXETG00000013795	usb1	89	55.605	ENSSLDG00000014174	usb1	77	55.760	Seriola_lalandi_dorsalis
ENSXETG00000013795	usb1	86	60.748	ENSSPUG00000006741	USB1	99	60.748	Sphenodon_punctatus
ENSXETG00000013795	usb1	89	54.709	ENSSPAG00000007484	usb1	76	54.587	Stegastes_partitus
ENSXETG00000013795	usb1	89	57.848	ENSSSCG00000002807	USB1	81	57.798	Sus_scrofa
ENSXETG00000013795	usb1	84	58.962	ENSTGUG00000004792	USB1	98	55.200	Taeniopygia_guttata
ENSXETG00000013795	usb1	89	54.709	ENSTRUG00000021069	usb1	80	54.839	Takifugu_rubripes
ENSXETG00000013795	usb1	99	45.560	ENSTNIG00000000626	usb1	97	44.788	Tetraodon_nigroviridis
ENSXETG00000013795	usb1	89	40.807	ENSTBEG00000001507	USB1	94	40.826	Tupaia_belangeri
ENSXETG00000013795	usb1	89	56.502	ENSUAMG00000016823	USB1	81	56.422	Ursus_americanus
ENSXETG00000013795	usb1	86	56.542	ENSUMAG00000021369	USB1	99	56.542	Ursus_maritimus
ENSXETG00000013795	usb1	90	56.696	ENSVVUG00000023700	USB1	84	56.621	Vulpes_vulpes
ENSXETG00000013795	usb1	96	52.209	ENSXMAG00000024687	usb1	63	55.399	Xiphophorus_maculatus