EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000015415 (Gene tree)
Gene ID: -
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 2391 bases
Position: chrGL173029.1:11207-13597
Accession: 16900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000033649	TUDOR	PF00567.24	3.6e-06	1	1
ENSXETP00000033649	SMN	PF06003.12	3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000033649	SMNDC1-201	426	-	ENSXETP00000033649	142 (aa)	-	F6WCU5

Gene Model

Click here to download ENSXETG00000015415's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000015415's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000015415	SMNDC1	100	82.394	ENSG00000119953	SMNDC1	60	82.394	Homo_sapiens
ENSXETG00000015415	SMNDC1	100	60.563	ENSAPOG00000021772	smndc1	60	60.563	Acanthochromis_polyacanthus
ENSXETG00000015415	SMNDC1	100	81.690	ENSAMEG00000005251	SMNDC1	60	81.690	Ailuropoda_melanoleuca
ENSXETG00000015415	SMNDC1	100	63.380	ENSACIG00000004819	smndc1	60	63.380	Amphilophus_citrinellus
ENSXETG00000015415	SMNDC1	100	60.563	ENSAOCG00000017869	smndc1	60	60.563	Amphiprion_ocellaris
ENSXETG00000015415	SMNDC1	100	60.563	ENSAPEG00000007752	smndc1	60	60.563	Amphiprion_percula
ENSXETG00000015415	SMNDC1	100	62.676	ENSATEG00000006830	smndc1	60	62.676	Anabas_testudineus
ENSXETG00000015415	SMNDC1	72	78.431	ENSAPLG00000004322	SMNDC1	52	78.431	Anas_platyrhynchos
ENSXETG00000015415	SMNDC1	100	80.282	ENSACAG00000005983	SMNDC1	60	80.282	Anolis_carolinensis
ENSXETG00000015415	SMNDC1	100	81.690	ENSANAG00000032875	SMNDC1	60	81.690	Aotus_nancymaae
ENSXETG00000015415	SMNDC1	100	62.676	ENSACLG00000016360	smndc1	65	62.676	Astatotilapia_calliptera
ENSXETG00000015415	SMNDC1	100	63.380	ENSAMXG00000020310	smndc1	59	63.380	Astyanax_mexicanus
ENSXETG00000015415	SMNDC1	100	81.690	ENSBTAG00000000551	SMNDC1	60	81.690	Bos_taurus
ENSXETG00000015415	SMNDC1	100	81.690	ENSCJAG00000018624	SMNDC1	60	81.690	Callithrix_jacchus
ENSXETG00000015415	SMNDC1	100	81.690	ENSCAFG00000010720	SMNDC1	60	81.690	Canis_familiaris
ENSXETG00000015415	SMNDC1	100	81.690	ENSCAFG00020011913	SMNDC1	60	81.690	Canis_lupus_dingo
ENSXETG00000015415	SMNDC1	100	81.690	ENSCHIG00000010604	SMNDC1	60	81.690	Capra_hircus
ENSXETG00000015415	SMNDC1	100	82.394	ENSTSYG00000026454	SMNDC1	60	82.394	Carlito_syrichta
ENSXETG00000015415	SMNDC1	100	80.986	ENSCAPG00000009132	SMNDC1	71	80.986	Cavia_aperea
ENSXETG00000015415	SMNDC1	100	80.986	ENSCPOG00000031666	SMNDC1	60	80.986	Cavia_porcellus
ENSXETG00000015415	SMNDC1	100	81.690	ENSCCAG00000021793	SMNDC1	60	81.690	Cebus_capucinus
ENSXETG00000015415	SMNDC1	100	81.690	ENSCATG00000035910	SMNDC1	60	81.690	Cercocebus_atys
ENSXETG00000015415	SMNDC1	100	80.986	ENSCLAG00000002838	SMNDC1	60	80.986	Chinchilla_lanigera
ENSXETG00000015415	SMNDC1	100	81.690	ENSCSAG00000005169	SMNDC1	60	81.690	Chlorocebus_sabaeus
ENSXETG00000015415	SMNDC1	100	81.690	ENSCHOG00000002936	SMNDC1	74	81.690	Choloepus_hoffmanni
ENSXETG00000015415	SMNDC1	100	82.394	ENSCPBG00000012837	SMNDC1	60	82.394	Chrysemys_picta_bellii
ENSXETG00000015415	SMNDC1	100	75.352	ENSCANG00000034620	-	58	75.352	Colobus_angolensis_palliatus
ENSXETG00000015415	SMNDC1	100	62.676	ENSCANG00000036994	-	59	62.676	Colobus_angolensis_palliatus
ENSXETG00000015415	SMNDC1	100	81.690	ENSCANG00000031720	-	60	81.690	Colobus_angolensis_palliatus
ENSXETG00000015415	SMNDC1	100	81.690	ENSCGRG00001012973	Smndc1	60	81.690	Cricetulus_griseus_chok1gshd
ENSXETG00000015415	SMNDC1	100	81.690	ENSCGRG00000012396	Smndc1	60	81.690	Cricetulus_griseus_crigri
ENSXETG00000015415	SMNDC1	91	65.116	ENSCSEG00000015621	smndc1	59	65.116	Cynoglossus_semilaevis
ENSXETG00000015415	SMNDC1	100	61.972	ENSCVAG00000020432	smndc1	60	61.972	Cyprinodon_variegatus
ENSXETG00000015415	SMNDC1	100	65.493	ENSDARG00000056235	smndc1	59	65.493	Danio_rerio
ENSXETG00000015415	SMNDC1	100	81.690	ENSDORG00000023715	Smndc1	60	81.690	Dipodomys_ordii
ENSXETG00000015415	SMNDC1	84	40.141	FBgn0039977	CG17454	58	40.141	Drosophila_melanogaster
ENSXETG00000015415	SMNDC1	100	59.589	ENSEBUG00000010929	smndc1	60	60.690	Eptatretus_burgeri
ENSXETG00000015415	SMNDC1	100	81.690	ENSEASG00005014930	SMNDC1	60	81.690	Equus_asinus_asinus
ENSXETG00000015415	SMNDC1	100	81.690	ENSECAG00000029973	SMNDC1	60	81.690	Equus_caballus
ENSXETG00000015415	SMNDC1	94	69.403	ENSELUG00000000227	smndc1	57	69.403	Esox_lucius
ENSXETG00000015415	SMNDC1	100	81.690	ENSFCAG00000027353	SMNDC1	60	81.690	Felis_catus
ENSXETG00000015415	SMNDC1	100	79.577	ENSFALG00000002306	SMNDC1	60	79.577	Ficedula_albicollis
ENSXETG00000015415	SMNDC1	100	81.690	ENSFDAG00000006468	SMNDC1	60	81.690	Fukomys_damarensis
ENSXETG00000015415	SMNDC1	96	65.441	ENSFHEG00000020150	smndc1	57	65.441	Fundulus_heteroclitus
ENSXETG00000015415	SMNDC1	94	64.925	ENSGMOG00000016585	smndc1	57	64.925	Gadus_morhua
ENSXETG00000015415	SMNDC1	100	79.577	ENSGALG00000008561	SMNDC1	60	79.577	Gallus_gallus
ENSXETG00000015415	SMNDC1	96	64.706	ENSGAFG00000011582	smndc1	57	64.706	Gambusia_affinis
ENSXETG00000015415	SMNDC1	100	62.676	ENSGACG00000009468	smndc1	60	62.676	Gasterosteus_aculeatus
ENSXETG00000015415	SMNDC1	100	82.394	ENSGAGG00000024547	SMNDC1	60	82.394	Gopherus_agassizii
ENSXETG00000015415	SMNDC1	100	81.690	ENSGGOG00000010071	SMNDC1	60	81.690	Gorilla_gorilla
ENSXETG00000015415	SMNDC1	100	62.676	ENSHBUG00000017596	smndc1	60	62.676	Haplochromis_burtoni
ENSXETG00000015415	SMNDC1	100	81.690	ENSHGLG00000013390	-	60	81.690	Heterocephalus_glaber_female
ENSXETG00000015415	SMNDC1	100	81.690	ENSHGLG00100004814	-	60	81.690	Heterocephalus_glaber_male
ENSXETG00000015415	SMNDC1	99	64.189	ENSHGLG00100004278	-	60	64.189	Heterocephalus_glaber_male
ENSXETG00000015415	SMNDC1	96	63.235	ENSHCOG00000000783	smndc1	57	63.235	Hippocampus_comes
ENSXETG00000015415	SMNDC1	100	61.972	ENSIPUG00000004217	smndc1	59	61.972	Ictalurus_punctatus
ENSXETG00000015415	SMNDC1	100	82.394	ENSSTOG00000006088	SMNDC1	60	82.394	Ictidomys_tridecemlineatus
ENSXETG00000015415	SMNDC1	100	81.690	ENSJJAG00000019974	Smndc1	60	81.690	Jaculus_jaculus
ENSXETG00000015415	SMNDC1	100	61.268	ENSKMAG00000020134	smndc1	60	61.268	Kryptolebias_marmoratus
ENSXETG00000015415	SMNDC1	100	61.268	ENSLBEG00000004598	smndc1	59	61.268	Labrus_bergylta
ENSXETG00000015415	SMNDC1	100	65.493	ENSLACG00000007784	SMNDC1	60	65.493	Latimeria_chalumnae
ENSXETG00000015415	SMNDC1	96	70.588	ENSLOCG00000012355	smndc1	57	70.588	Lepisosteus_oculatus
ENSXETG00000015415	SMNDC1	100	81.690	ENSLAFG00000014353	SMNDC1	60	81.690	Loxodonta_africana
ENSXETG00000015415	SMNDC1	100	59.155	ENSMFAG00000038381	-	53	59.155	Macaca_fascicularis
ENSXETG00000015415	SMNDC1	100	81.690	ENSMFAG00000002433	-	60	81.690	Macaca_fascicularis
ENSXETG00000015415	SMNDC1	100	81.690	ENSMMUG00000007775	SMNDC1	60	81.690	Macaca_mulatta
ENSXETG00000015415	SMNDC1	100	59.155	ENSMMUG00000045875	-	53	59.155	Macaca_mulatta
ENSXETG00000015415	SMNDC1	100	75.352	ENSMNEG00000033853	-	61	75.352	Macaca_nemestrina
ENSXETG00000015415	SMNDC1	100	81.690	ENSMNEG00000042963	-	60	81.690	Macaca_nemestrina
ENSXETG00000015415	SMNDC1	99	80.986	ENSMLEG00000040236	SMNDC1	61	80.986	Mandrillus_leucophaeus
ENSXETG00000015415	SMNDC1	100	64.789	ENSMAMG00000018233	smndc1	58	64.789	Mastacembelus_armatus
ENSXETG00000015415	SMNDC1	100	62.676	ENSMZEG00005027510	smndc1	59	64.925	Maylandia_zebra
ENSXETG00000015415	SMNDC1	96	72.059	ENSMAUG00000005459	-	59	71.127	Mesocricetus_auratus
ENSXETG00000015415	SMNDC1	100	81.690	ENSMAUG00000012243	-	60	81.690	Mesocricetus_auratus
ENSXETG00000015415	SMNDC1	100	81.690	ENSMICG00000027336	-	60	81.690	Microcebus_murinus
ENSXETG00000015415	SMNDC1	100	72.535	ENSMICG00000031640	-	61	72.535	Microcebus_murinus
ENSXETG00000015415	SMNDC1	100	80.986	ENSMOCG00000002458	Smndc1	60	80.986	Microtus_ochrogaster
ENSXETG00000015415	SMNDC1	100	63.380	ENSMMOG00000008856	smndc1	60	63.380	Mola_mola
ENSXETG00000015415	SMNDC1	100	83.099	ENSMODG00000010542	SMNDC1	60	83.099	Monodelphis_domestica
ENSXETG00000015415	SMNDC1	100	62.676	ENSMALG00000017598	smndc1	60	62.676	Monopterus_albus
ENSXETG00000015415	SMNDC1	100	81.690	MGP_CAROLIEiJ_G0023072	Smndc1	60	81.690	Mus_caroli
ENSXETG00000015415	SMNDC1	100	81.690	ENSMUSG00000025024	Smndc1	60	81.690	Mus_musculus
ENSXETG00000015415	SMNDC1	100	82.394	MGP_PahariEiJ_G0014560	Smndc1	60	82.394	Mus_pahari
ENSXETG00000015415	SMNDC1	100	81.690	MGP_SPRETEiJ_G0023993	Smndc1	60	81.690	Mus_spretus
ENSXETG00000015415	SMNDC1	100	81.690	ENSMPUG00000002089	SMNDC1	60	81.690	Mustela_putorius_furo
ENSXETG00000015415	SMNDC1	100	81.690	ENSMLUG00000016007	SMNDC1	60	81.690	Myotis_lucifugus
ENSXETG00000015415	SMNDC1	100	80.986	ENSNGAG00000006833	Smndc1	60	80.986	Nannospalax_galili
ENSXETG00000015415	SMNDC1	100	61.972	ENSNBRG00000017089	smndc1	60	61.972	Neolamprologus_brichardi
ENSXETG00000015415	SMNDC1	100	81.690	ENSNLEG00000015471	SMNDC1	60	81.690	Nomascus_leucogenys
ENSXETG00000015415	SMNDC1	100	80.986	ENSOPRG00000015348	SMNDC1	60	80.986	Ochotona_princeps
ENSXETG00000015415	SMNDC1	92	60.000	ENSODEG00000007594	-	57	58.462	Octodon_degus
ENSXETG00000015415	SMNDC1	100	61.972	ENSONIG00000000434	smndc1	60	61.972	Oreochromis_niloticus
ENSXETG00000015415	SMNDC1	100	83.803	ENSOANG00000001598	SMNDC1	60	83.803	Ornithorhynchus_anatinus
ENSXETG00000015415	SMNDC1	100	80.986	ENSOCUG00000008145	-	60	80.986	Oryctolagus_cuniculus
ENSXETG00000015415	SMNDC1	100	71.831	ENSOCUG00000012274	-	63	71.831	Oryctolagus_cuniculus
ENSXETG00000015415	SMNDC1	100	60.563	ENSORLG00000005934	smndc1	57	60.563	Oryzias_latipes
ENSXETG00000015415	SMNDC1	100	60.563	ENSORLG00020008796	smndc1	57	60.563	Oryzias_latipes_hni
ENSXETG00000015415	SMNDC1	100	60.563	ENSORLG00015013666	smndc1	60	60.563	Oryzias_latipes_hsok
ENSXETG00000015415	SMNDC1	96	65.441	ENSOMEG00000007590	smndc1	54	67.969	Oryzias_melastigma
ENSXETG00000015415	SMNDC1	100	81.690	ENSOGAG00000000571	SMNDC1	60	81.690	Otolemur_garnettii
ENSXETG00000015415	SMNDC1	100	81.690	ENSOARG00000009500	SMNDC1	60	81.690	Ovis_aries
ENSXETG00000015415	SMNDC1	100	81.690	ENSPPAG00000027815	SMNDC1	60	81.690	Pan_paniscus
ENSXETG00000015415	SMNDC1	100	81.690	ENSPPRG00000013749	SMNDC1	60	81.690	Panthera_pardus
ENSXETG00000015415	SMNDC1	100	81.690	ENSPTIG00000011451	SMNDC1	60	81.690	Panthera_tigris_altaica
ENSXETG00000015415	SMNDC1	100	81.690	ENSPTRG00000002937	SMNDC1	60	81.690	Pan_troglodytes
ENSXETG00000015415	SMNDC1	100	75.352	ENSPANG00000031346	-	59	75.352	Papio_anubis
ENSXETG00000015415	SMNDC1	100	81.690	ENSPANG00000020805	-	60	81.690	Papio_anubis
ENSXETG00000015415	SMNDC1	94	67.164	ENSPKIG00000017164	smndc1	57	67.164	Paramormyrops_kingsleyae
ENSXETG00000015415	SMNDC1	100	83.099	ENSPSIG00000012257	SMNDC1	60	83.099	Pelodiscus_sinensis
ENSXETG00000015415	SMNDC1	90	64.844	ENSPMGG00000015651	smndc1	54	64.844	Periophthalmus_magnuspinnatus
ENSXETG00000015415	SMNDC1	100	81.690	ENSPEMG00000022058	Smndc1	60	81.690	Peromyscus_maniculatus_bairdii
ENSXETG00000015415	SMNDC1	100	57.241	ENSPMAG00000007705	smndc1	60	57.241	Petromyzon_marinus
ENSXETG00000015415	SMNDC1	100	83.099	ENSPCIG00000018419	SMNDC1	60	83.099	Phascolarctos_cinereus
ENSXETG00000015415	SMNDC1	96	64.706	ENSPFOG00000017113	smndc1	57	64.706	Poecilia_formosa
ENSXETG00000015415	SMNDC1	96	65.441	ENSPLAG00000010372	smndc1	57	65.441	Poecilia_latipinna
ENSXETG00000015415	SMNDC1	96	64.706	ENSPMEG00000012288	smndc1	57	64.706	Poecilia_mexicana
ENSXETG00000015415	SMNDC1	96	63.971	ENSPREG00000012279	smndc1	57	63.971	Poecilia_reticulata
ENSXETG00000015415	SMNDC1	100	81.690	ENSPPYG00000002643	SMNDC1	60	81.690	Pongo_abelii
ENSXETG00000015415	SMNDC1	100	81.690	ENSPCAG00000016183	SMNDC1	74	81.690	Procavia_capensis
ENSXETG00000015415	SMNDC1	100	81.690	ENSPCOG00000024343	SMNDC1	60	81.690	Propithecus_coquereli
ENSXETG00000015415	SMNDC1	100	65.493	ENSPNAG00000025285	smndc1	59	65.493	Pygocentrus_nattereri
ENSXETG00000015415	SMNDC1	100	81.690	ENSRNOG00000014833	Smndc1	73	75.000	Rattus_norvegicus
ENSXETG00000015415	SMNDC1	100	74.648	ENSRBIG00000032452	-	64	74.648	Rhinopithecus_bieti
ENSXETG00000015415	SMNDC1	100	81.690	ENSRBIG00000000224	-	60	81.690	Rhinopithecus_bieti
ENSXETG00000015415	SMNDC1	100	75.352	ENSRROG00000039125	-	64	75.352	Rhinopithecus_roxellana
ENSXETG00000015415	SMNDC1	100	81.690	ENSRROG00000044992	-	60	81.690	Rhinopithecus_roxellana
ENSXETG00000015415	SMNDC1	100	81.690	ENSSBOG00000026789	SMNDC1	60	81.690	Saimiri_boliviensis_boliviensis
ENSXETG00000015415	SMNDC1	100	83.099	ENSSHAG00000015189	SMNDC1	60	83.099	Sarcophilus_harrisii
ENSXETG00000015415	SMNDC1	94	67.164	ENSSFOG00015008311	smndc1	57	67.164	Scleropages_formosus
ENSXETG00000015415	SMNDC1	100	62.676	ENSSMAG00000020118	smndc1	60	62.676	Scophthalmus_maximus
ENSXETG00000015415	SMNDC1	100	63.380	ENSSDUG00000015330	smndc1	60	63.380	Seriola_dumerili
ENSXETG00000015415	SMNDC1	100	63.380	ENSSLDG00000017325	smndc1	60	63.380	Seriola_lalandi_dorsalis
ENSXETG00000015415	SMNDC1	100	80.986	ENSSARG00000006063	SMNDC1	60	80.986	Sorex_araneus
ENSXETG00000015415	SMNDC1	100	80.986	ENSSPUG00000004574	SMNDC1	60	80.986	Sphenodon_punctatus
ENSXETG00000015415	SMNDC1	100	59.859	ENSSPAG00000000338	smndc1	60	59.859	Stegastes_partitus
ENSXETG00000015415	SMNDC1	100	80.986	ENSSSCG00000030507	SMNDC1	60	80.986	Sus_scrofa
ENSXETG00000015415	SMNDC1	100	79.577	ENSTGUG00000010599	SMNDC1	60	79.577	Taeniopygia_guttata
ENSXETG00000015415	SMNDC1	100	59.859	ENSTRUG00000023281	smndc1	60	59.859	Takifugu_rubripes
ENSXETG00000015415	SMNDC1	100	61.972	ENSTNIG00000013331	smndc1	60	61.972	Tetraodon_nigroviridis
ENSXETG00000015415	SMNDC1	100	81.690	ENSTBEG00000014337	SMNDC1	60	81.690	Tupaia_belangeri
ENSXETG00000015415	SMNDC1	100	81.690	ENSUAMG00000008142	SMNDC1	60	81.690	Ursus_americanus
ENSXETG00000015415	SMNDC1	100	81.690	ENSUMAG00000023722	SMNDC1	60	81.690	Ursus_maritimus
ENSXETG00000015415	SMNDC1	72	80.392	ENSVPAG00000003402	SMNDC1	52	80.392	Vicugna_pacos
ENSXETG00000015415	SMNDC1	100	81.690	ENSVVUG00000007820	SMNDC1	60	81.690	Vulpes_vulpes
ENSXETG00000015415	SMNDC1	96	63.971	ENSXCOG00000009159	smndc1	58	63.971	Xiphophorus_couchianus
ENSXETG00000015415	SMNDC1	96	63.971	ENSXMAG00000012755	smndc1	57	63.971	Xiphophorus_maculatus