EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000015439 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 1950 bases
Position: chrGL172669.1:156908-158857
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000033695	PABP	PF00658.18	1.2e-21	1	1
ENSXETP00000063374	PABP	PF00658.18	1.3e-21	1	1
ENSXETP00000063374	RRM_1	PF00076.22	7.2e-26	1	1
ENSXETP00000033695	RRM_1	PF00076.22	9.2e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000063186	-	1215	-	ENSXETP00000063374	405 (aa)	-	F7E049
ENSXETT00000033695	-	1215	-	ENSXETP00000033695	405 (aa)	-	F6VKU1

Gene Model

Click here to download ENSXETG00000015439's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000015439's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000015439	-	98	41.686	ENSXETG00000010946	pabpc4	84	41.403
ENSXETG00000015439	-	99	47.273	ENSXETG00000006635	pabpc1	98	47.273
ENSXETG00000015439	-	96	38.657	ENSXETG00000022831	pabpc1l	97	38.657

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000015439	-	97	45.161	ENSAPOG00000015105	pabpc1a	97	45.221	Acanthochromis_polyacanthus
ENSXETG00000015439	-	100	46.729	ENSAPOG00000017776	pabpc1b	99	46.963	Acanthochromis_polyacanthus
ENSXETG00000015439	-	97	45.392	ENSACIG00000004685	pabpc1a	97	44.988	Amphilophus_citrinellus
ENSXETG00000015439	-	100	44.749	ENSACIG00000018366	pabpc1b	99	44.804	Amphilophus_citrinellus
ENSXETG00000015439	-	100	45.721	ENSAOCG00000019839	pabpc1b	99	45.946	Amphiprion_ocellaris
ENSXETG00000015439	-	97	45.392	ENSAOCG00000011656	pabpc1a	97	45.455	Amphiprion_ocellaris
ENSXETG00000015439	-	97	46.047	ENSAPEG00000006963	pabpc1a	97	45.455	Amphiprion_percula
ENSXETG00000015439	-	100	45.721	ENSAPEG00000010435	pabpc1b	99	45.946	Amphiprion_percula
ENSXETG00000015439	-	97	46.083	ENSATEG00000024852	pabpc1a	97	45.921	Anabas_testudineus
ENSXETG00000015439	-	100	44.843	ENSATEG00000012917	pabpc1b	99	44.843	Anabas_testudineus
ENSXETG00000015439	-	100	45.536	ENSACLG00000014335	pabpc1b	99	45.536	Astatotilapia_calliptera
ENSXETG00000015439	-	97	45.392	ENSACLG00000009399	pabpc1a	97	45.581	Astatotilapia_calliptera
ENSXETG00000015439	-	100	44.843	ENSAMXG00000008599	pabpc1b	99	44.619	Astyanax_mexicanus
ENSXETG00000015439	-	100	44.966	ENSCSEG00000015241	-	99	44.966	Cynoglossus_semilaevis
ENSXETG00000015439	-	97	45.392	ENSCSEG00000013324	pabpc1a	98	45.392	Cynoglossus_semilaevis
ENSXETG00000015439	-	97	45.057	ENSCVAG00000021872	pabpc1a	97	45.221	Cyprinodon_variegatus
ENSXETG00000015439	-	100	44.719	ENSCVAG00000005489	pabpc1b	99	44.719	Cyprinodon_variegatus
ENSXETG00000015439	-	97	45.853	ENSDARG00000017219	pabpc1a	97	45.921	Danio_rerio
ENSXETG00000015439	-	100	45.778	ENSDARG00000021140	pabpc1b	99	45.291	Danio_rerio
ENSXETG00000015439	-	100	44.196	ENSELUG00000015062	-	99	44.196	Esox_lucius
ENSXETG00000015439	-	97	46.065	ENSELUG00000003614	pabpc1a	97	46.136	Esox_lucius
ENSXETG00000015439	-	97	44.931	ENSFHEG00000018979	pabpc1a	97	44.988	Fundulus_heteroclitus
ENSXETG00000015439	-	100	45.312	ENSFHEG00000008186	pabpc1b	99	45.657	Fundulus_heteroclitus
ENSXETG00000015439	-	80	53.125	ENSGMOG00000002448	-	81	53.125	Gadus_morhua
ENSXETG00000015439	-	97	43.919	ENSGMOG00000013448	pabpc1a	97	44.191	Gadus_morhua
ENSXETG00000015439	-	97	45.278	ENSGAFG00000019750	pabpc1a	97	45.921	Gambusia_affinis
ENSXETG00000015439	-	100	46.588	ENSGAFG00000010193	pabpc1b	99	46.588	Gambusia_affinis
ENSXETG00000015439	-	97	44.931	ENSGACG00000003572	pabpc1a	97	44.988	Gasterosteus_aculeatus
ENSXETG00000015439	-	100	44.568	ENSGACG00000003771	pabpc1b	98	46.420	Gasterosteus_aculeatus
ENSXETG00000015439	-	97	45.392	ENSHBUG00000020487	pabpc1a	97	45.581	Haplochromis_burtoni
ENSXETG00000015439	-	100	46.047	ENSHBUG00000002075	pabpc1b	99	46.047	Haplochromis_burtoni
ENSXETG00000015439	-	96	42.790	ENSHCOG00000003175	pabpc1b	93	42.723	Hippocampus_comes
ENSXETG00000015439	-	97	45.080	ENSHCOG00000013502	pabpc1a	97	45.221	Hippocampus_comes
ENSXETG00000015439	-	97	47.304	ENSIPUG00000010791	-	97	47.304	Ictalurus_punctatus
ENSXETG00000015439	-	100	44.270	ENSIPUG00000008848	pabpc1a	99	44.270	Ictalurus_punctatus
ENSXETG00000015439	-	100	46.905	ENSKMAG00000008049	pabpc1b	99	46.905	Kryptolebias_marmoratus
ENSXETG00000015439	-	97	45.853	ENSKMAG00000000605	pabpc1a	97	45.921	Kryptolebias_marmoratus
ENSXETG00000015439	-	97	46.313	ENSLBEG00000024002	-	97	46.313	Labrus_bergylta
ENSXETG00000015439	-	100	45.824	ENSLBEG00000026845	pabpc1b	99	45.824	Labrus_bergylta
ENSXETG00000015439	-	97	45.387	ENSMAMG00000004502	-	97	45.814	Mastacembelus_armatus
ENSXETG00000015439	-	100	45.089	ENSMAMG00000014610	pabpc1b	99	45.946	Mastacembelus_armatus
ENSXETG00000015439	-	100	45.536	ENSMZEG00005026745	pabpc1b	99	45.536	Maylandia_zebra
ENSXETG00000015439	-	97	45.392	ENSMZEG00005025416	pabpc1a	97	45.581	Maylandia_zebra
ENSXETG00000015439	-	97	46.210	ENSMMOG00000018044	pabpc1a	97	46.210	Mola_mola
ENSXETG00000015439	-	100	47.143	ENSMMOG00000018009	pabpc1b	99	47.143	Mola_mola
ENSXETG00000015439	-	99	40.315	ENSMODG00000015024	-	98	40.315	Monodelphis_domestica
ENSXETG00000015439	-	97	41.876	ENSMODG00000013156	-	97	42.105	Monodelphis_domestica
ENSXETG00000015439	-	100	45.238	ENSMALG00000006066	pabpc1b	99	45.238	Monopterus_albus
ENSXETG00000015439	-	97	45.700	ENSMALG00000013020	-	97	46.437	Monopterus_albus
ENSXETG00000015439	-	97	45.161	ENSNBRG00000003068	-	98	45.564	Neolamprologus_brichardi
ENSXETG00000015439	-	100	46.429	ENSNBRG00000013737	pabpc1b	99	46.778	Neolamprologus_brichardi
ENSXETG00000015439	-	100	45.312	ENSONIG00000002717	pabpc1b	99	45.312	Oreochromis_niloticus
ENSXETG00000015439	-	97	45.977	ENSONIG00000006871	-	97	46.279	Oreochromis_niloticus
ENSXETG00000015439	-	100	43.049	ENSORLG00000003008	-	99	43.498	Oryzias_latipes
ENSXETG00000015439	-	97	50.000	ENSORLG00000002691	pabpc1a	97	50.000	Oryzias_latipes
ENSXETG00000015439	-	100	43.049	ENSORLG00020022259	-	99	43.498	Oryzias_latipes_hni
ENSXETG00000015439	-	97	45.161	ENSORLG00020022398	pabpc1a	97	45.221	Oryzias_latipes_hni
ENSXETG00000015439	-	97	44.931	ENSORLG00015013633	pabpc1	97	44.988	Oryzias_latipes_hsok
ENSXETG00000015439	-	100	43.274	ENSORLG00015010932	-	99	43.722	Oryzias_latipes_hsok
ENSXETG00000015439	-	97	44.931	ENSOMEG00000020219	pabpc1a	97	45.455	Oryzias_melastigma
ENSXETG00000015439	-	96	45.291	ENSOMEG00000013627	pabpc1b	96	45.291	Oryzias_melastigma
ENSXETG00000015439	-	100	45.414	ENSPKIG00000005676	pabpc1b	99	45.740	Paramormyrops_kingsleyae
ENSXETG00000015439	-	53	50.222	ENSPMGG00000023134	-	90	50.222	Periophthalmus_magnuspinnatus
ENSXETG00000015439	-	53	49.115	ENSPMGG00000022487	pabpc1a	85	49.115	Periophthalmus_magnuspinnatus
ENSXETG00000015439	-	99	42.117	ENSPCIG00000016995	-	53	42.117	Phascolarctos_cinereus
ENSXETG00000015439	-	97	44.619	ENSPFOG00000010815	pabpc1a	97	45.125	Poecilia_formosa
ENSXETG00000015439	-	100	45.270	ENSPFOG00000005917	pabpc1b	99	45.946	Poecilia_formosa
ENSXETG00000015439	-	100	45.618	ENSPLAG00000001388	pabpc1b	99	45.946	Poecilia_latipinna
ENSXETG00000015439	-	97	45.161	ENSPLAG00000004114	pabpc1a	97	45.921	Poecilia_latipinna
ENSXETG00000015439	-	100	45.270	ENSPMEG00000014399	pabpc1b	99	45.946	Poecilia_mexicana
ENSXETG00000015439	-	97	45.161	ENSPMEG00000001334	pabpc1a	97	45.921	Poecilia_mexicana
ENSXETG00000015439	-	97	46.341	ENSPREG00000019595	pabpc1a	97	46.569	Poecilia_reticulata
ENSXETG00000015439	-	100	46.588	ENSPREG00000010911	pabpc1b	99	46.588	Poecilia_reticulata
ENSXETG00000015439	-	100	46.047	ENSPNYG00000012578	pabpc1b	99	46.047	Pundamilia_nyererei
ENSXETG00000015439	-	97	46.324	ENSPNYG00000005192	pabpc1a	98	46.324	Pundamilia_nyererei
ENSXETG00000015439	-	100	44.619	ENSPNAG00000024626	pabpc1b	99	45.291	Pygocentrus_nattereri
ENSXETG00000015439	-	100	45.190	ENSPNAG00000028408	pabpc1a	99	45.190	Pygocentrus_nattereri
ENSXETG00000015439	-	63	47.955	ENSRBIG00000028738	-	81	47.266	Rhinopithecus_bieti
ENSXETG00000015439	-	97	38.337	ENSSHAG00000000511	-	99	38.551	Sarcophilus_harrisii
ENSXETG00000015439	-	100	43.722	ENSSFOG00015006662	pabpc1a	99	43.722	Scleropages_formosus
ENSXETG00000015439	-	100	45.618	ENSSFOG00015002752	-	99	45.843	Scleropages_formosus
ENSXETG00000015439	-	97	46.083	ENSSMAG00000010803	pabpc1a	97	46.083	Scophthalmus_maximus
ENSXETG00000015439	-	97	45.727	ENSSMAG00000006869	pabpc1b	97	45.940	Scophthalmus_maximus
ENSXETG00000015439	-	100	45.824	ENSSDUG00000011965	pabpc1b	98	46.050	Seriola_dumerili
ENSXETG00000015439	-	97	45.392	ENSSDUG00000006675	pabpc1a	97	45.688	Seriola_dumerili
ENSXETG00000015439	-	100	45.312	ENSSLDG00000014156	pabpc1b	99	45.536	Seriola_lalandi_dorsalis
ENSXETG00000015439	-	97	45.392	ENSSLDG00000011661	pabpc1a	97	45.688	Seriola_lalandi_dorsalis
ENSXETG00000015439	-	100	46.050	ENSSPAG00000019265	pabpc1b	99	46.050	Stegastes_partitus
ENSXETG00000015439	-	97	45.392	ENSSPAG00000014453	-	97	45.221	Stegastes_partitus
ENSXETG00000015439	-	97	45.977	ENSTRUG00000011577	-	97	45.349	Takifugu_rubripes
ENSXETG00000015439	-	100	46.102	ENSTRUG00000003767	-	99	46.102	Takifugu_rubripes
ENSXETG00000015439	-	97	45.890	ENSTNIG00000013307	pabpc1a	97	45.958	Tetraodon_nigroviridis
ENSXETG00000015439	-	100	45.796	ENSTNIG00000009153	pabpc1b	99	45.796	Tetraodon_nigroviridis
ENSXETG00000015439	-	96	36.957	ENSUMAG00000023926	-	86	36.957	Ursus_maritimus
ENSXETG00000015439	-	97	47.174	ENSXCOG00000017066	pabpc1a	97	47.174	Xiphophorus_couchianus
ENSXETG00000015439	-	100	46.604	ENSXCOG00000019901	pabpc1b	99	46.604	Xiphophorus_couchianus
ENSXETG00000015439	-	100	45.843	ENSXMAG00000003753	pabpc1b	99	45.946	Xiphophorus_maculatus
ENSXETG00000015439	-	97	47.059	ENSXMAG00000002555	pabpc1a	97	47.059	Xiphophorus_maculatus