EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000016091 (Gene tree)
Gene ID: -
Gene Symbol: e4f1
Alias: -
Full Name: Xenopus tropicalis E4F transcription factor 1 (e4f1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 16236 bases
Position: chrGL172663.1:2920672-2936907
Accession: NM_001078698
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000060164	zf-C2H2	PF00096.26	1.1e-34	1	7
ENSXETP00000060164	zf-C2H2	PF00096.26	1.1e-34	2	7
ENSXETP00000060164	zf-C2H2	PF00096.26	1.1e-34	3	7
ENSXETP00000060164	zf-C2H2	PF00096.26	1.1e-34	4	7
ENSXETP00000060164	zf-C2H2	PF00096.26	1.1e-34	5	7
ENSXETP00000060164	zf-C2H2	PF00096.26	1.1e-34	6	7
ENSXETP00000060164	zf-C2H2	PF00096.26	1.1e-34	7	7
ENSXETP00000035090	zf-C2H2	PF00096.26	3e-33	1	7
ENSXETP00000035090	zf-C2H2	PF00096.26	3e-33	2	7
ENSXETP00000035090	zf-C2H2	PF00096.26	3e-33	3	7
ENSXETP00000035090	zf-C2H2	PF00096.26	3e-33	4	7
ENSXETP00000035090	zf-C2H2	PF00096.26	3e-33	5	7
ENSXETP00000035090	zf-C2H2	PF00096.26	3e-33	6	7
ENSXETP00000035090	zf-C2H2	PF00096.26	3e-33	7	7
ENSXETP00000060164	zf-met	PF12874.7	2.4e-06	1	1
ENSXETP00000035090	zf-met	PF12874.7	4.2e-05	1	1
ENSXETP00000060164	zf-C2H2_jaz	PF12171.8	3e-18	1	1
ENSXETP00000035090	zf-C2H2_jaz	PF12171.8	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000035090	-	3128	XM_012970378	ENSXETP00000035090	675 (aa)	XP_012825832	Q5EAM4
ENSXETT00000066226	-	2747	XM_012970381	ENSXETP00000060164	484 (aa)	XP_012825835	Q0V9H4

Gene Model

Click here to download ENSXETG00000016091's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000016091's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000016091	e4f1	59	36.649	ENSXETG00000031310	-	68	41.558
ENSXETG00000016091	e4f1	76	31.395	ENSXETG00000001980	znf408	94	31.395
ENSXETG00000016091	e4f1	77	33.922	ENSXETG00000027149	-	98	33.922
ENSXETG00000016091	e4f1	60	36.134	ENSXETG00000031460	-	91	38.710
ENSXETG00000016091	e4f1	69	37.079	ENSXETG00000026673	-	90	37.079
ENSXETG00000016091	e4f1	59	35.833	ENSXETG00000033098	ZNF366	61	34.899
ENSXETG00000016091	e4f1	59	40.146	ENSXETG00000030967	-	91	41.964
ENSXETG00000016091	e4f1	61	41.104	ENSXETG00000034213	-	99	41.104
ENSXETG00000016091	e4f1	62	36.585	ENSXETG00000017175	-	100	35.882
ENSXETG00000016091	e4f1	61	35.106	ENSXETG00000013744	znf319	82	34.821
ENSXETG00000016091	e4f1	50	50.980	ENSXETG00000027536	znf574	61	50.980
ENSXETG00000016091	e4f1	68	41.772	ENSXETG00000013882	-	99	42.169
ENSXETG00000016091	e4f1	60	39.091	ENSXETG00000027366	snai1	89	39.091
ENSXETG00000016091	e4f1	58	38.667	ENSXETG00000024118	-	98	41.250
ENSXETG00000016091	e4f1	58	39.456	ENSXETG00000030249	-	80	44.231
ENSXETG00000016091	e4f1	67	31.541	ENSXETG00000002690	-	71	42.857
ENSXETG00000016091	e4f1	73	32.743	ENSXETG00000002717	-	100	33.099
ENSXETG00000016091	e4f1	91	38.542	ENSXETG00000023597	-	100	38.542
ENSXETG00000016091	e4f1	69	37.037	ENSXETG00000031192	-	99	37.037
ENSXETG00000016091	e4f1	67	43.333	ENSXETG00000015125	-	95	43.333
ENSXETG00000016091	e4f1	60	39.048	ENSXETG00000006490	znf350	93	41.333
ENSXETG00000016091	e4f1	74	39.474	ENSXETG00000016781	-	99	42.857
ENSXETG00000016091	e4f1	58	43.396	ENSXETG00000001910	znf646	99	43.939
ENSXETG00000016091	e4f1	81	34.821	ENSXETG00000001911	znf668	95	41.538
ENSXETG00000016091	e4f1	79	37.079	ENSXETG00000030307	-	100	37.079
ENSXETG00000016091	e4f1	60	36.757	ENSXETG00000006263	gfi1b	56	40.000
ENSXETG00000016091	e4f1	66	47.059	ENSXETG00000012506	znf91	99	47.059
ENSXETG00000016091	e4f1	63	30.409	ENSXETG00000004510	gzf1	50	40.260
ENSXETG00000016091	e4f1	51	44.156	ENSXETG00000027484	znf432	64	44.156
ENSXETG00000016091	e4f1	73	43.590	ENSXETG00000008801	znf628	94	43.590
ENSXETG00000016091	e4f1	73	38.272	ENSXETG00000016062	znf184	97	38.272
ENSXETG00000016091	e4f1	59	35.938	ENSXETG00000032038	-	99	46.154
ENSXETG00000016091	e4f1	64	44.000	ENSXETG00000002101	prdm5	73	44.000
ENSXETG00000016091	e4f1	59	39.091	ENSXETG00000024006	snai2	52	39.091
ENSXETG00000016091	e4f1	73	46.250	ENSXETG00000006575	znf420	76	46.250
ENSXETG00000016091	e4f1	65	40.000	ENSXETG00000002279	zbtb14	65	40.000
ENSXETG00000016091	e4f1	77	40.506	ENSXETG00000002339	znf423	86	40.506
ENSXETG00000016091	e4f1	63	39.450	ENSXETG00000004190	patz1	52	39.450
ENSXETG00000016091	e4f1	59	36.000	ENSXETG00000033508	-	67	41.538
ENSXETG00000016091	e4f1	65	44.000	ENSXETG00000010512	-	99	44.000
ENSXETG00000016091	e4f1	68	45.455	ENSXETG00000023643	znf484	100	45.455
ENSXETG00000016091	e4f1	68	37.209	ENSXETG00000025282	-	99	37.209

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000016091	e4f1	99	68.376	ENSCSEG00000015852	e4f1	71	68.376	Cynoglossus_semilaevis
ENSXETG00000016091	e4f1	99	69.643	ENSCVAG00000002788	e4f1	83	66.400	Cyprinodon_variegatus
ENSXETG00000016091	e4f1	82	61.290	ENSEBUG00000016435	e4f1	54	61.290	Eptatretus_burgeri
ENSXETG00000016091	e4f1	99	68.750	ENSFHEG00000022551	e4f1	79	68.750	Fundulus_heteroclitus
ENSXETG00000016091	e4f1	99	67.257	ENSGMOG00000011409	e4f1	83	67.257	Gadus_morhua
ENSXETG00000016091	e4f1	99	74.286	ENSGACG00000011808	e4f1	67	71.681	Gasterosteus_aculeatus
ENSXETG00000016091	e4f1	99	69.369	ENSHCOG00000016455	e4f1	67	69.369	Hippocampus_comes
ENSXETG00000016091	e4f1	100	69.912	ENSIPUG00000005379	e4f1	78	69.912	Ictalurus_punctatus
ENSXETG00000016091	e4f1	99	69.355	ENSLBEG00000026373	e4f1	61	69.355	Labrus_bergylta
ENSXETG00000016091	e4f1	99	48.161	ENSMMOG00000007612	e4f1	96	41.506	Mola_mola
ENSXETG00000016091	e4f1	99	65.000	ENSMALG00000007314	e4f1	71	65.000	Monopterus_albus
ENSXETG00000016091	e4f1	99	66.071	ENSORLG00000009160	e4f1	79	67.257	Oryzias_latipes
ENSXETG00000016091	e4f1	99	67.257	ENSORLG00020017974	e4f1	83	67.257	Oryzias_latipes_hni
ENSXETG00000016091	e4f1	99	67.257	ENSORLG00015007385	e4f1	79	67.257	Oryzias_latipes_hsok
ENSXETG00000016091	e4f1	99	68.142	ENSOMEG00000012220	e4f1	61	68.142	Oryzias_melastigma
ENSXETG00000016091	e4f1	99	70.796	ENSPKIG00000001942	e4f1	66	70.796	Paramormyrops_kingsleyae
ENSXETG00000016091	e4f1	74	70.707	ENSPMGG00000020527	e4f1	94	48.435	Periophthalmus_magnuspinnatus
ENSXETG00000016091	e4f1	99	72.381	ENSSFOG00015021291	e4f1	95	40.636	Scleropages_formosus
ENSXETG00000016091	e4f1	99	70.796	ENSSMAG00000014720	e4f1	74	70.796	Scophthalmus_maximus
ENSXETG00000016091	e4f1	100	71.429	ENSSPUG00000011420	E4F1	78	71.429	Sphenodon_punctatus
ENSXETG00000016091	e4f1	99	67.257	ENSTRUG00000005176	e4f1	81	64.516	Takifugu_rubripes
ENSXETG00000016091	e4f1	99	67.257	ENSTNIG00000018001	e4f1	84	67.257	Tetraodon_nigroviridis