EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000016144 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 16482 bases
Position: chrGL172727.1:962230-978711
Accession: XB-GENE-6086860
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000035212	PRP21_like_P	PF12230.8	1.6e-41	1	1
ENSXETP00000058658	Surp	PF01805.20	2.3e-47	1	2
ENSXETP00000058658	Surp	PF01805.20	2.3e-47	2	2
ENSXETP00000035212	Surp	PF01805.20	5.4e-46	1	2
ENSXETP00000035212	Surp	PF01805.20	5.4e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000035212	-	2377	-	ENSXETP00000035212	778 (aa)	-	F6VHD9
ENSXETT00000066244	-	805	-	ENSXETP00000058658	255 (aa)	-	F6XHW9

Gene Model

Click here to download ENSXETG00000016144's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000016144's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000016144	sf3a1	100	85.822	ENSG00000099995	SF3A1	100	85.822	Homo_sapiens
ENSXETG00000016144	sf3a1	96	85.081	ENSAPOG00000020465	sf3a1	100	79.699	Acanthochromis_polyacanthus
ENSXETG00000016144	sf3a1	97	87.143	ENSAMEG00000007737	SF3A1	100	86.073	Ailuropoda_melanoleuca
ENSXETG00000016144	sf3a1	96	83.871	ENSACIG00000020672	sf3a1	100	79.073	Amphilophus_citrinellus
ENSXETG00000016144	sf3a1	96	85.484	ENSAOCG00000003060	sf3a1	100	79.026	Amphiprion_ocellaris
ENSXETG00000016144	sf3a1	96	85.484	ENSAPEG00000010735	sf3a1	100	79.151	Amphiprion_percula
ENSXETG00000016144	sf3a1	96	84.677	ENSATEG00000021201	sf3a1	96	81.997	Anabas_testudineus
ENSXETG00000016144	sf3a1	95	86.243	ENSAPLG00000009057	SF3A1	98	87.368	Anas_platyrhynchos
ENSXETG00000016144	sf3a1	96	89.157	ENSACAG00000009415	SF3A1	100	83.149	Anolis_carolinensis
ENSXETG00000016144	sf3a1	100	85.320	ENSANAG00000032045	SF3A1	100	85.822	Aotus_nancymaae
ENSXETG00000016144	sf3a1	96	84.615	ENSACLG00000012622	sf3a1	100	79.523	Astatotilapia_calliptera
ENSXETG00000016144	sf3a1	95	84.490	ENSAMXG00000005382	sf3a1	97	82.176	Astyanax_mexicanus
ENSXETG00000016144	sf3a1	100	85.571	ENSBTAG00000003390	SF3A1	100	86.073	Bos_taurus
ENSXETG00000016144	sf3a1	87	48.649	WBGene00004188	prp-21	88	43.275	Caenorhabditis_elegans
ENSXETG00000016144	sf3a1	97	86.727	ENSCJAG00000010370	SF3A1	100	85.822	Callithrix_jacchus
ENSXETG00000016144	sf3a1	100	85.571	ENSCAFG00000012559	SF3A1	100	86.073	Canis_familiaris
ENSXETG00000016144	sf3a1	100	85.571	ENSCAFG00020000838	SF3A1	100	86.073	Canis_lupus_dingo
ENSXETG00000016144	sf3a1	100	85.445	ENSCHIG00000018642	SF3A1	100	85.947	Capra_hircus
ENSXETG00000016144	sf3a1	100	85.571	ENSTSYG00000004739	SF3A1	100	86.073	Carlito_syrichta
ENSXETG00000016144	sf3a1	90	78.261	ENSCAPG00000015414	SF3A1	97	71.854	Cavia_aperea
ENSXETG00000016144	sf3a1	100	85.822	ENSCPOG00000014589	SF3A1	100	85.947	Cavia_porcellus
ENSXETG00000016144	sf3a1	100	85.320	ENSCCAG00000032006	SF3A1	100	85.822	Cebus_capucinus
ENSXETG00000016144	sf3a1	100	85.445	ENSCATG00000029241	SF3A1	100	85.822	Cercocebus_atys
ENSXETG00000016144	sf3a1	100	85.320	ENSCLAG00000006508	SF3A1	100	85.696	Chinchilla_lanigera
ENSXETG00000016144	sf3a1	100	85.445	ENSCSAG00000009470	SF3A1	100	85.822	Chlorocebus_sabaeus
ENSXETG00000016144	sf3a1	89	89.474	ENSCHOG00000005201	SF3A1	65	91.429	Choloepus_hoffmanni
ENSXETG00000016144	sf3a1	96	88.353	ENSCPBG00000007595	SF3A1	100	83.899	Chrysemys_picta_bellii
ENSXETG00000016144	sf3a1	84	66.977	ENSCING00000008526	-	97	49.936	Ciona_intestinalis
ENSXETG00000016144	sf3a1	90	68.103	ENSCSAVG00000005608	-	93	66.667	Ciona_savignyi
ENSXETG00000016144	sf3a1	100	85.445	ENSCANG00000033564	SF3A1	100	85.822	Colobus_angolensis_palliatus
ENSXETG00000016144	sf3a1	96	87.270	ENSCGRG00001008933	Sf3a1	100	85.822	Cricetulus_griseus_chok1gshd
ENSXETG00000016144	sf3a1	96	87.270	ENSCGRG00000006127	Sf3a1	100	85.822	Cricetulus_griseus_crigri
ENSXETG00000016144	sf3a1	92	83.193	ENSCSEG00000008097	SF3A1	89	81.933	Cynoglossus_semilaevis
ENSXETG00000016144	sf3a1	96	83.806	ENSCSEG00000010792	sf3a1	100	77.945	Cynoglossus_semilaevis
ENSXETG00000016144	sf3a1	96	83.267	ENSCVAG00000004560	sf3a1	100	77.096	Cyprinodon_variegatus
ENSXETG00000016144	sf3a1	96	86.585	ENSDARG00000041887	sf3a1	100	81.461	Danio_rerio
ENSXETG00000016144	sf3a1	97	86.504	ENSDNOG00000010629	SF3A1	100	85.482	Dasypus_novemcinctus
ENSXETG00000016144	sf3a1	100	85.822	ENSDORG00000005613	Sf3a1	100	85.947	Dipodomys_ordii
ENSXETG00000016144	sf3a1	80	69.524	FBgn0266917	Sf3a1	83	60.846	Drosophila_melanogaster
ENSXETG00000016144	sf3a1	85	93.088	ENSETEG00000017194	SF3A1	100	84.375	Echinops_telfairi
ENSXETG00000016144	sf3a1	88	81.333	ENSEBUG00000001285	sf3a1	95	66.961	Eptatretus_burgeri
ENSXETG00000016144	sf3a1	100	85.571	ENSEASG00005010254	SF3A1	100	86.073	Equus_asinus_asinus
ENSXETG00000016144	sf3a1	100	85.571	ENSECAG00000023962	SF3A1	100	86.073	Equus_caballus
ENSXETG00000016144	sf3a1	72	88.525	ENSEEUG00000003159	SF3A1	82	88.525	Erinaceus_europaeus
ENSXETG00000016144	sf3a1	96	84.274	ENSELUG00000022578	sf3a1	100	76.990	Esox_lucius
ENSXETG00000016144	sf3a1	100	85.445	ENSFCAG00000011932	SF3A1	100	85.947	Felis_catus
ENSXETG00000016144	sf3a1	95	85.298	ENSFALG00000006944	SF3A1	100	84.151	Ficedula_albicollis
ENSXETG00000016144	sf3a1	100	85.320	ENSFDAG00000009560	SF3A1	100	85.696	Fukomys_damarensis
ENSXETG00000016144	sf3a1	96	83.871	ENSFHEG00000010866	sf3a1	100	78.321	Fundulus_heteroclitus
ENSXETG00000016144	sf3a1	100	77.358	ENSGMOG00000016024	sf3a1	100	76.730	Gadus_morhua
ENSXETG00000016144	sf3a1	95	87.020	ENSGALG00000007937	SF3A1	100	85.283	Gallus_gallus
ENSXETG00000016144	sf3a1	96	83.871	ENSGAFG00000009111	sf3a1	100	77.261	Gambusia_affinis
ENSXETG00000016144	sf3a1	96	82.661	ENSGACG00000011893	sf3a1	100	77.792	Gasterosteus_aculeatus
ENSXETG00000016144	sf3a1	96	88.755	ENSGAGG00000000762	SF3A1	99	83.990	Gopherus_agassizii
ENSXETG00000016144	sf3a1	100	85.822	ENSGGOG00000012631	SF3A1	100	85.822	Gorilla_gorilla
ENSXETG00000016144	sf3a1	96	84.615	ENSHBUG00000015795	sf3a1	100	79.523	Haplochromis_burtoni
ENSXETG00000016144	sf3a1	100	85.445	ENSHGLG00000007907	SF3A1	100	85.947	Heterocephalus_glaber_female
ENSXETG00000016144	sf3a1	100	85.445	ENSHGLG00100013799	SF3A1	100	85.947	Heterocephalus_glaber_male
ENSXETG00000016144	sf3a1	96	82.186	ENSHCOG00000015423	sf3a1	100	75.628	Hippocampus_comes
ENSXETG00000016144	sf3a1	96	80.285	ENSIPUG00000002470	sf3a1	98	80.577	Ictalurus_punctatus
ENSXETG00000016144	sf3a1	97	86.727	ENSSTOG00000013892	SF3A1	100	85.947	Ictidomys_tridecemlineatus
ENSXETG00000016144	sf3a1	97	86.883	ENSJJAG00000022566	Sf3a1	100	85.822	Jaculus_jaculus
ENSXETG00000016144	sf3a1	96	83.065	ENSKMAG00000002400	sf3a1	100	78.652	Kryptolebias_marmoratus
ENSXETG00000016144	sf3a1	96	83.401	ENSLBEG00000022974	sf3a1	100	77.972	Labrus_bergylta
ENSXETG00000016144	sf3a1	96	86.585	ENSLACG00000003565	SF3A1	100	81.445	Latimeria_chalumnae
ENSXETG00000016144	sf3a1	96	85.200	ENSLOCG00000008251	sf3a1	99	80.324	Lepisosteus_oculatus
ENSXETG00000016144	sf3a1	97	57.881	ENSLAFG00000026032	-	96	56.579	Loxodonta_africana
ENSXETG00000016144	sf3a1	100	86.692	ENSLAFG00000000448	SF3A1	100	87.072	Loxodonta_africana
ENSXETG00000016144	sf3a1	100	85.445	ENSMFAG00000031979	SF3A1	100	85.696	Macaca_fascicularis
ENSXETG00000016144	sf3a1	100	85.445	ENSMMUG00000005547	SF3A1	100	85.696	Macaca_mulatta
ENSXETG00000016144	sf3a1	100	85.320	ENSMNEG00000037229	SF3A1	100	85.571	Macaca_nemestrina
ENSXETG00000016144	sf3a1	100	85.445	ENSMLEG00000041908	SF3A1	100	85.822	Mandrillus_leucophaeus
ENSXETG00000016144	sf3a1	96	85.484	ENSMAMG00000006460	sf3a1	95	82.392	Mastacembelus_armatus
ENSXETG00000016144	sf3a1	96	84.615	ENSMZEG00005009633	sf3a1	100	79.523	Maylandia_zebra
ENSXETG00000016144	sf3a1	95	87.020	ENSMGAG00000001330	SF3A1	98	87.615	Meleagris_gallopavo
ENSXETG00000016144	sf3a1	92	83.106	ENSMAUG00000020317	Sf3a1	100	79.198	Mesocricetus_auratus
ENSXETG00000016144	sf3a1	100	85.571	ENSMICG00000010038	SF3A1	100	85.947	Microcebus_murinus
ENSXETG00000016144	sf3a1	100	85.445	ENSMOCG00000008438	Sf3a1	100	85.947	Microtus_ochrogaster
ENSXETG00000016144	sf3a1	100	77.261	ENSMMOG00000015588	sf3a1	99	77.261	Mola_mola
ENSXETG00000016144	sf3a1	97	88.036	ENSMODG00000009270	SF3A1	100	86.558	Monodelphis_domestica
ENSXETG00000016144	sf3a1	100	79.674	ENSMALG00000000148	sf3a1	99	81.497	Monopterus_albus
ENSXETG00000016144	sf3a1	100	85.194	MGP_CAROLIEiJ_G0016029	Sf3a1	100	85.445	Mus_caroli
ENSXETG00000016144	sf3a1	100	85.194	ENSMUSG00000002129	Sf3a1	100	85.445	Mus_musculus
ENSXETG00000016144	sf3a1	100	85.194	MGP_PahariEiJ_G0016862	Sf3a1	100	85.445	Mus_pahari
ENSXETG00000016144	sf3a1	100	85.194	MGP_SPRETEiJ_G0016870	Sf3a1	100	85.445	Mus_spretus
ENSXETG00000016144	sf3a1	100	85.947	ENSMPUG00000013144	SF3A1	100	86.198	Mustela_putorius_furo
ENSXETG00000016144	sf3a1	100	85.194	ENSMLUG00000002139	SF3A1	100	85.822	Myotis_lucifugus
ENSXETG00000016144	sf3a1	100	85.696	ENSNGAG00000016977	Sf3a1	100	85.822	Nannospalax_galili
ENSXETG00000016144	sf3a1	96	84.211	ENSNBRG00000016642	sf3a1	100	79.523	Neolamprologus_brichardi
ENSXETG00000016144	sf3a1	100	85.445	ENSNLEG00000003686	SF3A1	100	85.822	Nomascus_leucogenys
ENSXETG00000016144	sf3a1	89	82.456	ENSMEUG00000008741	SF3A1	100	77.457	Notamacropus_eugenii
ENSXETG00000016144	sf3a1	96	86.815	ENSOPRG00000016636	SF3A1	100	85.445	Ochotona_princeps
ENSXETG00000016144	sf3a1	100	85.320	ENSODEG00000002571	SF3A1	100	85.571	Octodon_degus
ENSXETG00000016144	sf3a1	96	84.615	ENSONIG00000010848	sf3a1	100	78.921	Oreochromis_niloticus
ENSXETG00000016144	sf3a1	96	87.337	ENSOCUG00000007633	SF3A1	100	85.947	Oryctolagus_cuniculus
ENSXETG00000016144	sf3a1	96	83.806	ENSORLG00000013050	sf3a1	99	78.375	Oryzias_latipes
ENSXETG00000016144	sf3a1	96	83.806	ENSORLG00020003236	sf3a1	97	77.308	Oryzias_latipes_hni
ENSXETG00000016144	sf3a1	96	83.806	ENSORLG00015017411	sf3a1	100	78.392	Oryzias_latipes_hsok
ENSXETG00000016144	sf3a1	96	84.211	ENSOMEG00000013362	sf3a1	100	78.392	Oryzias_melastigma
ENSXETG00000016144	sf3a1	100	85.445	ENSOGAG00000012931	SF3A1	100	85.822	Otolemur_garnettii
ENSXETG00000016144	sf3a1	100	83.438	ENSOARG00000006849	SF3A1	100	83.689	Ovis_aries
ENSXETG00000016144	sf3a1	100	85.194	ENSPPAG00000041790	SF3A1	100	85.194	Pan_paniscus
ENSXETG00000016144	sf3a1	100	85.445	ENSPPRG00000004391	SF3A1	100	85.947	Panthera_pardus
ENSXETG00000016144	sf3a1	97	86.883	ENSPTIG00000000844	SF3A1	98	88.173	Panthera_tigris_altaica
ENSXETG00000016144	sf3a1	100	85.822	ENSPTRG00000014240	SF3A1	100	85.822	Pan_troglodytes
ENSXETG00000016144	sf3a1	100	85.445	ENSPANG00000020772	SF3A1	100	85.822	Papio_anubis
ENSXETG00000016144	sf3a1	89	90.749	ENSPSIG00000012803	SF3A1	97	92.308	Pelodiscus_sinensis
ENSXETG00000016144	sf3a1	87	90.045	ENSPMGG00000023096	sf3a1	99	78.836	Periophthalmus_magnuspinnatus
ENSXETG00000016144	sf3a1	96	87.402	ENSPEMG00000009494	Sf3a1	100	85.947	Peromyscus_maniculatus_bairdii
ENSXETG00000016144	sf3a1	96	77.016	ENSPMAG00000007139	-	100	71.476	Petromyzon_marinus
ENSXETG00000016144	sf3a1	97	88.036	ENSPCIG00000022692	SF3A1	100	86.432	Phascolarctos_cinereus
ENSXETG00000016144	sf3a1	100	70.226	ENSPFOG00000016768	sf3a1	93	73.978	Poecilia_formosa
ENSXETG00000016144	sf3a1	96	85.081	ENSPLAG00000017268	sf3a1	100	77.945	Poecilia_latipinna
ENSXETG00000016144	sf3a1	86	91.870	ENSPMEG00000019811	sf3a1	98	79.549	Poecilia_mexicana
ENSXETG00000016144	sf3a1	96	85.081	ENSPREG00000010347	sf3a1	100	78.195	Poecilia_reticulata
ENSXETG00000016144	sf3a1	100	85.445	ENSPPYG00000011707	SF3A1	100	85.822	Pongo_abelii
ENSXETG00000016144	sf3a1	57	85.915	ENSPCAG00000003266	SF3A1	57	86.364	Procavia_capensis
ENSXETG00000016144	sf3a1	100	85.571	ENSPCOG00000026630	SF3A1	100	86.073	Propithecus_coquereli
ENSXETG00000016144	sf3a1	94	87.265	ENSPVAG00000017719	SF3A1	100	83.794	Pteropus_vampyrus
ENSXETG00000016144	sf3a1	96	84.615	ENSPNYG00000018706	sf3a1	100	79.648	Pundamilia_nyererei
ENSXETG00000016144	sf3a1	95	85.306	ENSPNAG00000003721	sf3a1	97	82.176	Pygocentrus_nattereri
ENSXETG00000016144	sf3a1	97	86.753	ENSRNOG00000005218	Sf3a1	100	85.320	Rattus_norvegicus
ENSXETG00000016144	sf3a1	100	85.320	ENSRBIG00000032167	SF3A1	100	85.696	Rhinopithecus_bieti
ENSXETG00000016144	sf3a1	100	85.320	ENSRROG00000044908	SF3A1	100	85.696	Rhinopithecus_roxellana
ENSXETG00000016144	sf3a1	92	86.803	ENSSBOG00000021960	SF3A1	98	87.669	Saimiri_boliviensis_boliviensis
ENSXETG00000016144	sf3a1	97	85.306	ENSSHAG00000003666	SF3A1	96	86.184	Sarcophilus_harrisii
ENSXETG00000016144	sf3a1	96	84.800	ENSSFOG00015004579	sf3a1	100	79.401	Scleropages_formosus
ENSXETG00000016144	sf3a1	96	83.806	ENSSMAG00000004275	sf3a1	100	76.759	Scophthalmus_maximus
ENSXETG00000016144	sf3a1	96	84.615	ENSSDUG00000022219	sf3a1	100	79.125	Seriola_dumerili
ENSXETG00000016144	sf3a1	96	84.615	ENSSLDG00000012642	sf3a1	100	79.125	Seriola_lalandi_dorsalis
ENSXETG00000016144	sf3a1	96	84.073	ENSSARG00000005960	SF3A1	98	84.625	Sorex_araneus
ENSXETG00000016144	sf3a1	96	85.325	ENSSPUG00000018863	SF3A1	100	82.484	Sphenodon_punctatus
ENSXETG00000016144	sf3a1	96	85.020	ENSSPAG00000011856	sf3a1	100	79.799	Stegastes_partitus
ENSXETG00000016144	sf3a1	100	85.947	ENSSSCG00000010002	SF3A1	100	86.198	Sus_scrofa
ENSXETG00000016144	sf3a1	95	85.997	ENSTGUG00000010547	SF3A1	99	87.122	Taeniopygia_guttata
ENSXETG00000016144	sf3a1	96	84.615	ENSTRUG00000006118	sf3a1	100	76.942	Takifugu_rubripes
ENSXETG00000016144	sf3a1	65	90.419	ENSTNIG00000005713	sf3a1	87	86.239	Tetraodon_nigroviridis
ENSXETG00000016144	sf3a1	100	79.046	ENSTBEG00000012771	SF3A1	100	79.548	Tupaia_belangeri
ENSXETG00000016144	sf3a1	100	85.213	ENSTTRG00000001535	SF3A1	100	85.589	Tursiops_truncatus
ENSXETG00000016144	sf3a1	99	84.324	ENSUAMG00000006750	SF3A1	99	84.829	Ursus_americanus
ENSXETG00000016144	sf3a1	97	87.013	ENSUMAG00000016665	SF3A1	97	88.305	Ursus_maritimus
ENSXETG00000016144	sf3a1	100	85.571	ENSVVUG00000003075	SF3A1	100	86.073	Vulpes_vulpes
ENSXETG00000016144	sf3a1	96	83.468	ENSXCOG00000015653	sf3a1	100	77.010	Xiphophorus_couchianus
ENSXETG00000016144	sf3a1	96	83.871	ENSXMAG00000002753	sf3a1	100	77.136	Xiphophorus_maculatus