EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000016224 (Gene tree)
Gene ID: -
Gene Symbol: tarbp1
Alias: -
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 69300 bases
Position: chrGL172809.1:1095044-1164343
Accession: XB-GENE-987523
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000035428	SpoU_methylase	PF00588.19	9.7e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000035428	-	4092	-	ENSXETP00000035428	1363 (aa)	-	F6ULL7

Gene Model

Click here to download ENSXETG00000016224's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000016224's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000016224	tarbp1	99	56.350	ENSG00000059588	TARBP1	84	56.423	Homo_sapiens
ENSXETG00000016224	tarbp1	99	42.796	ENSAPOG00000016419	si:dkey-85a20.4	84	42.796	Acanthochromis_polyacanthus
ENSXETG00000016224	tarbp1	99	55.102	ENSAMEG00000003359	TARBP1	99	55.102	Ailuropoda_melanoleuca
ENSXETG00000016224	tarbp1	99	42.888	ENSATEG00000020266	si:dkey-85a20.4	83	42.671	Anabas_testudineus
ENSXETG00000016224	tarbp1	99	56.594	ENSAPLG00000007666	TARBP1	99	57.294	Anas_platyrhynchos
ENSXETG00000016224	tarbp1	98	52.254	ENSACAG00000001142	TARBP1	84	52.254	Anolis_carolinensis
ENSXETG00000016224	tarbp1	99	54.745	ENSANAG00000022031	TARBP1	86	54.818	Aotus_nancymaae
ENSXETG00000016224	tarbp1	99	55.880	ENSBTAG00000004517	TARBP1	82	59.412	Bos_taurus
ENSXETG00000016224	tarbp1	99	56.496	ENSCJAG00000018155	TARBP1	84	56.569	Callithrix_jacchus
ENSXETG00000016224	tarbp1	99	55.765	ENSCAFG00000011533	TARBP1	96	55.765	Canis_familiaris
ENSXETG00000016224	tarbp1	99	55.660	ENSCAFG00020027141	TARBP1	84	55.660	Canis_lupus_dingo
ENSXETG00000016224	tarbp1	99	55.117	ENSCHIG00000011437	TARBP1	83	55.190	Capra_hircus
ENSXETG00000016224	tarbp1	97	55.206	ENSTSYG00000010382	TARBP1	98	55.281	Carlito_syrichta
ENSXETG00000016224	tarbp1	94	47.667	ENSCAPG00000010831	TARBP1	99	47.667	Cavia_aperea
ENSXETG00000016224	tarbp1	99	53.009	ENSCPOG00000013995	TARBP1	85	53.009	Cavia_porcellus
ENSXETG00000016224	tarbp1	99	56.496	ENSCCAG00000037278	TARBP1	84	56.569	Cebus_capucinus
ENSXETG00000016224	tarbp1	99	56.309	ENSCATG00000011754	TARBP1	84	56.309	Cercocebus_atys
ENSXETG00000016224	tarbp1	96	53.364	ENSCLAG00000003655	TARBP1	96	53.364	Chinchilla_lanigera
ENSXETG00000016224	tarbp1	94	57.110	ENSCSAG00000010100	TARBP1	99	57.110	Chlorocebus_sabaeus
ENSXETG00000016224	tarbp1	93	57.849	ENSCPBG00000005587	TARBP1	82	61.950	Chrysemys_picta_bellii
ENSXETG00000016224	tarbp1	99	56.099	ENSCANG00000034343	TARBP1	99	56.099	Colobus_angolensis_palliatus
ENSXETG00000016224	tarbp1	99	53.232	ENSCGRG00001016690	Tarbp1	86	53.232	Cricetulus_griseus_chok1gshd
ENSXETG00000016224	tarbp1	99	53.232	ENSCGRG00000016893	Tarbp1	92	53.232	Cricetulus_griseus_crigri
ENSXETG00000016224	tarbp1	99	39.260	ENSCSEG00000005255	si:dkey-85a20.4	84	41.890	Cynoglossus_semilaevis
ENSXETG00000016224	tarbp1	99	43.024	ENSDARG00000079055	si:dkey-85a20.4	99	50.775	Danio_rerio
ENSXETG00000016224	tarbp1	99	55.782	ENSDNOG00000008637	TARBP1	82	55.887	Dasypus_novemcinctus
ENSXETG00000016224	tarbp1	95	52.716	ENSDORG00000007984	Tarbp1	100	52.793	Dipodomys_ordii
ENSXETG00000016224	tarbp1	99	56.360	ENSEASG00005000252	TARBP1	85	56.090	Equus_asinus_asinus
ENSXETG00000016224	tarbp1	99	56.067	ENSECAG00000023673	TARBP1	82	58.840	Equus_caballus
ENSXETG00000016224	tarbp1	99	42.475	ENSELUG00000012193	si:dkey-85a20.4	84	42.475	Esox_lucius
ENSXETG00000016224	tarbp1	99	52.915	ENSFCAG00000014183	TARBP1	83	52.915	Felis_catus
ENSXETG00000016224	tarbp1	97	56.231	ENSFALG00000013565	TARBP1	99	56.699	Ficedula_albicollis
ENSXETG00000016224	tarbp1	94	52.036	ENSFDAG00000001308	TARBP1	99	52.036	Fukomys_damarensis
ENSXETG00000016224	tarbp1	92	51.124	ENSFHEG00000007565	si:dkey-85a20.4	81	51.124	Fundulus_heteroclitus
ENSXETG00000016224	tarbp1	99	40.302	ENSGMOG00000004549	si:dkey-85a20.4	98	40.288	Gadus_morhua
ENSXETG00000016224	tarbp1	95	60.883	ENSGALG00000011000	TARBP1	85	60.883	Gallus_gallus
ENSXETG00000016224	tarbp1	99	43.001	ENSGAFG00000007387	si:dkey-85a20.4	83	43.001	Gambusia_affinis
ENSXETG00000016224	tarbp1	99	42.888	ENSGACG00000005865	si:dkey-85a20.4	96	42.567	Gasterosteus_aculeatus
ENSXETG00000016224	tarbp1	99	58.473	ENSGAGG00000012102	TARBP1	87	58.473	Gopherus_agassizii
ENSXETG00000016224	tarbp1	99	54.996	ENSGGOG00000022879	TARBP1	99	55.069	Gorilla_gorilla
ENSXETG00000016224	tarbp1	99	43.188	ENSHBUG00000008877	si:dkey-85a20.4	83	43.188	Haplochromis_burtoni
ENSXETG00000016224	tarbp1	99	53.561	ENSHGLG00000011592	TARBP1	85	53.561	Heterocephalus_glaber_female
ENSXETG00000016224	tarbp1	99	53.488	ENSHGLG00100015169	TARBP1	94	53.488	Heterocephalus_glaber_male
ENSXETG00000016224	tarbp1	99	39.468	ENSIPUG00000005249	si:dkey-85a20.4	82	39.227	Ictalurus_punctatus
ENSXETG00000016224	tarbp1	99	53.920	ENSSTOG00000032291	TARBP1	96	54.068	Ictidomys_tridecemlineatus
ENSXETG00000016224	tarbp1	99	51.383	ENSJJAG00000017840	Tarbp1	94	51.383	Jaculus_jaculus
ENSXETG00000016224	tarbp1	76	44.706	ENSKMAG00000017546	si:dkey-85a20.4	73	44.837	Kryptolebias_marmoratus
ENSXETG00000016224	tarbp1	75	47.581	ENSLBEG00000012132	si:dkey-85a20.4	77	47.581	Labrus_bergylta
ENSXETG00000016224	tarbp1	99	50.871	ENSLACG00000004337	TARBP1	83	50.871	Latimeria_chalumnae
ENSXETG00000016224	tarbp1	99	45.541	ENSLOCG00000016214	si:dkey-85a20.4	83	45.468	Lepisosteus_oculatus
ENSXETG00000016224	tarbp1	99	54.865	ENSLAFG00000011394	TARBP1	86	54.865	Loxodonta_africana
ENSXETG00000016224	tarbp1	99	54.883	ENSMFAG00000041068	TARBP1	85	54.923	Macaca_fascicularis
ENSXETG00000016224	tarbp1	99	54.883	ENSMMUG00000021703	TARBP1	84	54.923	Macaca_mulatta
ENSXETG00000016224	tarbp1	99	56.528	ENSMNEG00000045002	TARBP1	84	56.528	Macaca_nemestrina
ENSXETG00000016224	tarbp1	99	56.598	ENSMLEG00000044182	TARBP1	99	56.598	Mandrillus_leucophaeus
ENSXETG00000016224	tarbp1	99	43.475	ENSMAMG00000021760	si:dkey-85a20.4	84	43.475	Mastacembelus_armatus
ENSXETG00000016224	tarbp1	99	43.084	ENSMZEG00005005751	si:dkey-85a20.4	83	43.084	Maylandia_zebra
ENSXETG00000016224	tarbp1	99	53.031	ENSMAUG00000020968	Tarbp1	86	53.031	Mesocricetus_auratus
ENSXETG00000016224	tarbp1	99	51.347	ENSMICG00000015280	TARBP1	83	51.347	Microcebus_murinus
ENSXETG00000016224	tarbp1	99	52.971	ENSMOCG00000004128	Tarbp1	85	52.971	Microtus_ochrogaster
ENSXETG00000016224	tarbp1	99	41.540	ENSMMOG00000007795	si:dkey-85a20.4	83	41.830	Mola_mola
ENSXETG00000016224	tarbp1	99	56.674	ENSMODG00000008504	TARBP1	82	56.674	Monodelphis_domestica
ENSXETG00000016224	tarbp1	98	42.070	ENSMALG00000002916	si:dkey-85a20.4	83	42.438	Monopterus_albus
ENSXETG00000016224	tarbp1	99	52.505	MGP_CAROLIEiJ_G0031729	Tarbp1	86	52.505	Mus_caroli
ENSXETG00000016224	tarbp1	99	52.180	ENSMUSG00000090290	Tarbp1	86	52.180	Mus_musculus
ENSXETG00000016224	tarbp1	99	52.498	MGP_PahariEiJ_G0023326	Tarbp1	86	52.498	Mus_pahari
ENSXETG00000016224	tarbp1	99	52.505	MGP_SPRETEiJ_G0032846	Tarbp1	86	52.505	Mus_spretus
ENSXETG00000016224	tarbp1	91	54.980	ENSMPUG00000002802	TARBP1	99	54.980	Mustela_putorius_furo
ENSXETG00000016224	tarbp1	99	52.161	ENSMLUG00000002414	TARBP1	99	52.161	Myotis_lucifugus
ENSXETG00000016224	tarbp1	99	56.204	ENSNLEG00000002518	TARBP1	84	56.277	Nomascus_leucogenys
ENSXETG00000016224	tarbp1	80	58.706	ENSOPRG00000013822	TARBP1	67	58.706	Ochotona_princeps
ENSXETG00000016224	tarbp1	99	52.405	ENSODEG00000005238	TARBP1	88	52.353	Octodon_degus
ENSXETG00000016224	tarbp1	99	43.862	ENSONIG00000009789	si:dkey-85a20.4	97	43.862	Oreochromis_niloticus
ENSXETG00000016224	tarbp1	99	55.029	ENSOCUG00000017418	TARBP1	83	55.102	Oryctolagus_cuniculus
ENSXETG00000016224	tarbp1	99	42.090	ENSORLG00000010529	si:dkey-85a20.4	83	41.727	Oryzias_latipes
ENSXETG00000016224	tarbp1	99	42.163	ENSORLG00020019264	si:dkey-85a20.4	83	41.800	Oryzias_latipes_hni
ENSXETG00000016224	tarbp1	99	41.945	ENSORLG00015003276	si:dkey-85a20.4	83	41.582	Oryzias_latipes_hsok
ENSXETG00000016224	tarbp1	99	54.446	ENSOGAG00000002379	TARBP1	84	54.446	Otolemur_garnettii
ENSXETG00000016224	tarbp1	99	55.022	ENSOARG00000003434	TARBP1	90	55.095	Ovis_aries
ENSXETG00000016224	tarbp1	99	56.277	ENSPPAG00000028097	TARBP1	99	56.350	Pan_paniscus
ENSXETG00000016224	tarbp1	99	53.571	ENSPPRG00000013561	TARBP1	88	53.869	Panthera_pardus
ENSXETG00000016224	tarbp1	99	55.129	ENSPTIG00000009281	TARBP1	99	55.129	Panthera_tigris_altaica
ENSXETG00000016224	tarbp1	99	56.350	ENSPTRG00000002124	TARBP1	84	56.423	Pan_troglodytes
ENSXETG00000016224	tarbp1	99	56.455	ENSPANG00000021933	TARBP1	84	56.455	Papio_anubis
ENSXETG00000016224	tarbp1	99	43.714	ENSPKIG00000016716	si:dkey-85a20.4	82	43.714	Paramormyrops_kingsleyae
ENSXETG00000016224	tarbp1	94	58.482	ENSPSIG00000010699	TARBP1	99	58.482	Pelodiscus_sinensis
ENSXETG00000016224	tarbp1	99	52.792	ENSPEMG00000006888	Tarbp1	90	52.792	Peromyscus_maniculatus_bairdii
ENSXETG00000016224	tarbp1	90	71.717	ENSPCIG00000029710	TARBP1	80	71.717	Phascolarctos_cinereus
ENSXETG00000016224	tarbp1	99	42.662	ENSPFOG00000013020	si:dkey-85a20.4	97	42.744	Poecilia_formosa
ENSXETG00000016224	tarbp1	99	43.053	ENSPLAG00000006044	si:dkey-85a20.4	83	43.134	Poecilia_latipinna
ENSXETG00000016224	tarbp1	99	42.878	ENSPMEG00000017857	si:dkey-85a20.4	83	42.960	Poecilia_mexicana
ENSXETG00000016224	tarbp1	99	42.795	ENSPREG00000022753	si:dkey-85a20.4	83	42.878	Poecilia_reticulata
ENSXETG00000016224	tarbp1	89	55.466	ENSPPYG00000000102	TARBP1	82	55.556	Pongo_abelii
ENSXETG00000016224	tarbp1	78	69.231	ENSPCAG00000004808	TARBP1	66	69.231	Procavia_capensis
ENSXETG00000016224	tarbp1	99	53.538	ENSPCOG00000005666	TARBP1	84	53.571	Propithecus_coquereli
ENSXETG00000016224	tarbp1	99	45.806	ENSPVAG00000014798	TARBP1	84	45.806	Pteropus_vampyrus
ENSXETG00000016224	tarbp1	99	42.098	ENSPNYG00000019135	si:dkey-85a20.4	83	42.389	Pundamilia_nyererei
ENSXETG00000016224	tarbp1	99	49.708	ENSRNOG00000053574	Tarbp1	86	49.708	Rattus_norvegicus
ENSXETG00000016224	tarbp1	99	52.778	ENSRBIG00000043362	TARBP1	92	52.666	Rhinopithecus_bieti
ENSXETG00000016224	tarbp1	99	56.245	ENSRROG00000029527	TARBP1	87	56.245	Rhinopithecus_roxellana
ENSXETG00000016224	tarbp1	99	56.640	ENSSBOG00000034503	TARBP1	96	56.713	Saimiri_boliviensis_boliviensis
ENSXETG00000016224	tarbp1	99	56.328	ENSSHAG00000000013	TARBP1	99	56.337	Sarcophilus_harrisii
ENSXETG00000016224	tarbp1	99	43.292	ENSSFOG00015002660	si:dkey-85a20.4	97	43.727	Scleropages_formosus
ENSXETG00000016224	tarbp1	99	43.519	ENSSMAG00000007081	si:dkey-85a20.4	82	43.519	Scophthalmus_maximus
ENSXETG00000016224	tarbp1	99	42.535	ENSSDUG00000023566	si:dkey-85a20.4	83	42.420	Seriola_dumerili
ENSXETG00000016224	tarbp1	99	43.218	ENSSLDG00000020200	si:dkey-85a20.4	83	42.929	Seriola_lalandi_dorsalis
ENSXETG00000016224	tarbp1	90	60.829	ENSSARG00000012207	TARBP1	76	60.829	Sorex_araneus
ENSXETG00000016224	tarbp1	99	55.678	ENSSPUG00000015364	TARBP1	84	56.149	Sphenodon_punctatus
ENSXETG00000016224	tarbp1	99	43.043	ENSSPAG00000007213	si:dkey-85a20.4	83	42.723	Stegastes_partitus
ENSXETG00000016224	tarbp1	94	62.147	ENSSSCG00000010160	TARBP1	83	60.947	Sus_scrofa
ENSXETG00000016224	tarbp1	96	57.089	ENSTGUG00000010214	TARBP1	100	57.089	Taeniopygia_guttata
ENSXETG00000016224	tarbp1	99	43.605	ENSTNIG00000016586	si:dkey-85a20.4	99	43.895	Tetraodon_nigroviridis
ENSXETG00000016224	tarbp1	94	51.769	ENSTTRG00000008707	TARBP1	83	51.846	Tursiops_truncatus
ENSXETG00000016224	tarbp1	97	55.240	ENSUMAG00000006730	TARBP1	99	55.240	Ursus_maritimus
ENSXETG00000016224	tarbp1	77	60.417	ENSVPAG00000007665	TARBP1	74	60.417	Vicugna_pacos
ENSXETG00000016224	tarbp1	99	55.733	ENSVVUG00000007460	TARBP1	99	55.903	Vulpes_vulpes
ENSXETG00000016224	tarbp1	90	46.594	ENSXCOG00000011779	si:dkey-85a20.4	90	46.739	Xiphophorus_couchianus
ENSXETG00000016224	tarbp1	76	41.908	ENSXMAG00000009600	si:dkey-85a20.4	99	42.017	Xiphophorus_maculatus