EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000016239 (Gene tree)
Gene ID: -
Gene Symbol: ybx3
Alias: -
Full Name: Xenopus tropicalis Y-box binding protein 3 (ybx3)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 16383 bases
Position: chrGL173134.1:805319-821701
Accession: NM_001015855
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000035457	CSD	PF00313.22	3.4e-26	1	1
ENSXETP00000035458	CSD	PF00313.22	4.2e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000035458	-	1798	-	ENSXETP00000035458	307 (aa)	-	F6PQQ6
ENSXETT00000035457	-	1621	XM_012966546	ENSXETP00000035457	248 (aa)	XP_012822000	Q5EAM6

Gene Model

Click here to download ENSXETG00000016239's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000016239's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000016239	ybx3	54	73.881	ENSXETG00000013436	ybx1	78	53.878

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000016239	ybx3	90	68.142	ENSG00000060138	YBX3	82	93.333	Homo_sapiens
ENSXETG00000016239	ybx3	91	53.618	ENSAMEG00000009393	YBX3	56	92.222	Ailuropoda_melanoleuca
ENSXETG00000016239	ybx3	77	92.593	ENSAPLG00000003147	YBX3	69	93.023	Anas_platyrhynchos
ENSXETG00000016239	ybx3	90	48.069	ENSANAG00000033366	-	65	83.929	Aotus_nancymaae
ENSXETG00000016239	ybx3	90	69.027	ENSANAG00000024492	-	62	92.222	Aotus_nancymaae
ENSXETG00000016239	ybx3	96	56.962	ENSBTAG00000009663	YBX3	55	84.158	Bos_taurus
ENSXETG00000016239	ybx3	97	50.201	ENSCJAG00000033824	-	75	60.000	Callithrix_jacchus
ENSXETG00000016239	ybx3	90	68.584	ENSCJAG00000021660	-	73	72.523	Callithrix_jacchus
ENSXETG00000016239	ybx3	88	71.689	ENSCAFG00000013401	YBX3	99	72.603	Canis_familiaris
ENSXETG00000016239	ybx3	90	66.964	ENSCAFG00020006412	YBX3	71	68.326	Canis_lupus_dingo
ENSXETG00000016239	ybx3	96	54.062	ENSCHIG00000010863	YBX3	55	92.222	Capra_hircus
ENSXETG00000016239	ybx3	66	86.316	ENSTSYG00000035821	-	69	88.889	Carlito_syrichta
ENSXETG00000016239	ybx3	88	67.580	ENSTSYG00000004204	-	84	71.818	Carlito_syrichta
ENSXETG00000016239	ybx3	73	60.338	ENSCAPG00000015039	YBX3	63	90.909	Cavia_aperea
ENSXETG00000016239	ybx3	69	77.457	ENSCPOG00000011329	YBX3	81	73.303	Cavia_porcellus
ENSXETG00000016239	ybx3	90	68.142	ENSCCAG00000016469	YBX3	53	92.222	Cebus_capucinus
ENSXETG00000016239	ybx3	90	64.602	ENSCATG00000034411	YBX3	53	92.222	Cercocebus_atys
ENSXETG00000016239	ybx3	90	56.122	ENSCLAG00000016030	YBX3	64	90.909	Chinchilla_lanigera
ENSXETG00000016239	ybx3	92	53.000	ENSCSAG00000008744	YBX3	53	92.222	Chlorocebus_sabaeus
ENSXETG00000016239	ybx3	89	70.588	ENSCPBG00000014147	YBX3	81	71.429	Chrysemys_picta_bellii
ENSXETG00000016239	ybx3	50	68.800	ENSCING00000010654	yb1/2/3	52	63.946	Ciona_intestinalis
ENSXETG00000016239	ybx3	90	65.487	ENSCANG00000036801	YBX3	89	72.072	Colobus_angolensis_palliatus
ENSXETG00000016239	ybx3	86	83.810	ENSCGRG00001016148	Ybx3	74	72.727	Cricetulus_griseus_chok1gshd
ENSXETG00000016239	ybx3	90	56.436	ENSCGRG00000004563	Ybx3	89	69.182	Cricetulus_griseus_crigri
ENSXETG00000016239	ybx3	98	55.625	ENSDORG00000009103	Ybx3	55	92.045	Dipodomys_ordii
ENSXETG00000016239	ybx3	89	47.475	ENSETEG00000002557	YBX3	99	51.712	Echinops_telfairi
ENSXETG00000016239	ybx3	90	64.444	ENSEASG00005014726	YBX3	71	64.545	Equus_asinus_asinus
ENSXETG00000016239	ybx3	90	66.814	ENSECAG00000013777	YBX3	72	68.326	Equus_caballus
ENSXETG00000016239	ybx3	89	51.351	ENSEEUG00000010415	YBX3	68	92.941	Erinaceus_europaeus
ENSXETG00000016239	ybx3	90	68.142	ENSFCAG00000027748	YBX3	53	92.222	Felis_catus
ENSXETG00000016239	ybx3	78	92.593	ENSFALG00000003661	YBX3	72	93.023	Ficedula_albicollis
ENSXETG00000016239	ybx3	80	53.759	ENSFDAG00000021192	YBX3	62	90.909	Fukomys_damarensis
ENSXETG00000016239	ybx3	88	72.273	ENSGALG00000031890	YBX3	75	75.909	Gallus_gallus
ENSXETG00000016239	ybx3	89	71.493	ENSGAGG00000017780	YBX3	75	75.000	Gopherus_agassizii
ENSXETG00000016239	ybx3	90	68.142	ENSGGOG00000001352	YBX3	53	92.222	Gorilla_gorilla
ENSXETG00000016239	ybx3	69	69.886	ENSHGLG00000015495	-	74	71.429	Heterocephalus_glaber_female
ENSXETG00000016239	ybx3	92	55.401	ENSHGLG00000014798	-	91	49.390	Heterocephalus_glaber_female
ENSXETG00000016239	ybx3	67	72.619	ENSHGLG00100003589	YBX3	87	73.182	Heterocephalus_glaber_male
ENSXETG00000016239	ybx3	92	53.512	ENSSTOG00000032577	-	81	56.690	Ictidomys_tridecemlineatus
ENSXETG00000016239	ybx3	90	50.893	ENSJJAG00000014239	Ybx3	92	81.481	Jaculus_jaculus
ENSXETG00000016239	ybx3	92	53.922	ENSLAFG00000017247	YBX3	53	92.222	Loxodonta_africana
ENSXETG00000016239	ybx3	90	64.602	ENSMFAG00000039369	YBX3	53	92.222	Macaca_fascicularis
ENSXETG00000016239	ybx3	92	53.000	ENSMMUG00000022469	YBX3	61	92.222	Macaca_mulatta
ENSXETG00000016239	ybx3	90	64.602	ENSMNEG00000045109	YBX3	53	92.222	Macaca_nemestrina
ENSXETG00000016239	ybx3	88	66.210	ENSMLEG00000033618	YBX3	76	71.233	Mandrillus_leucophaeus
ENSXETG00000016239	ybx3	87	72.350	ENSMGAG00000014224	YBX3	99	76.037	Meleagris_gallopavo
ENSXETG00000016239	ybx3	86	83.810	ENSMAUG00000012185	Ybx3	86	72.727	Mesocricetus_auratus
ENSXETG00000016239	ybx3	92	56.376	ENSMICG00000038002	-	71	71.795	Microcebus_murinus
ENSXETG00000016239	ybx3	93	62.609	ENSMICG00000031459	-	77	63.014	Microcebus_murinus
ENSXETG00000016239	ybx3	87	83.810	ENSMOCG00000016291	Ybx3	92	72.727	Microtus_ochrogaster
ENSXETG00000016239	ybx3	93	53.247	ENSMODG00000018248	YBX3	64	92.045	Monodelphis_domestica
ENSXETG00000016239	ybx3	86	82.857	MGP_CAROLIEiJ_G0028947	Ybx3	74	72.727	Mus_caroli
ENSXETG00000016239	ybx3	86	82.857	ENSMUSG00000030189	Ybx3	74	72.727	Mus_musculus
ENSXETG00000016239	ybx3	86	82.857	MGP_PahariEiJ_G0022709	Ybx3	74	72.727	Mus_pahari
ENSXETG00000016239	ybx3	86	82.857	MGP_SPRETEiJ_G0029994	Ybx3	74	72.727	Mus_spretus
ENSXETG00000016239	ybx3	92	41.083	ENSMPUG00000011810	YBX3	78	45.215	Mustela_putorius_furo
ENSXETG00000016239	ybx3	83	53.521	ENSMLUG00000007476	YBX3	90	67.176	Myotis_lucifugus
ENSXETG00000016239	ybx3	86	67.130	ENSNGAG00000000710	Ybx3	88	67.130	Nannospalax_galili
ENSXETG00000016239	ybx3	82	80.000	ENSNLEG00000034844	YBX3	77	67.568	Nomascus_leucogenys
ENSXETG00000016239	ybx3	50	62.097	ENSMEUG00000002507	-	71	59.864	Notamacropus_eugenii
ENSXETG00000016239	ybx3	75	54.656	ENSODEG00000017957	YBX3	84	57.627	Octodon_degus
ENSXETG00000016239	ybx3	99	48.148	ENSOCUG00000001889	YBX3	83	53.716	Oryctolagus_cuniculus
ENSXETG00000016239	ybx3	94	55.272	ENSOGAG00000013245	YBX3	71	68.712	Otolemur_garnettii
ENSXETG00000016239	ybx3	82	89.474	ENSOARG00000020919	YBX3	66	92.222	Ovis_aries
ENSXETG00000016239	ybx3	90	68.304	ENSPPAG00000039068	YBX3	76	72.072	Pan_paniscus
ENSXETG00000016239	ybx3	90	69.469	ENSPPRG00000005859	YBX3	53	92.222	Panthera_pardus
ENSXETG00000016239	ybx3	89	54.515	ENSPTIG00000005322	YBX3	55	92.045	Panthera_tigris_altaica
ENSXETG00000016239	ybx3	90	68.142	ENSPTRG00000004681	YBX3	53	92.222	Pan_troglodytes
ENSXETG00000016239	ybx3	90	64.602	ENSPANG00000010280	YBX3	53	92.222	Papio_anubis
ENSXETG00000016239	ybx3	87	74.537	ENSPSIG00000009247	YBX3	99	75.463	Pelodiscus_sinensis
ENSXETG00000016239	ybx3	94	69.787	ENSPEMG00000012132	-	87	72.273	Peromyscus_maniculatus_bairdii
ENSXETG00000016239	ybx3	94	69.787	ENSPEMG00000010391	-	82	72.273	Peromyscus_maniculatus_bairdii
ENSXETG00000016239	ybx3	81	53.409	ENSPCIG00000029949	YBX3	92	70.248	Phascolarctos_cinereus
ENSXETG00000016239	ybx3	92	55.333	ENSPPYG00000004279	YBX3	53	92.222	Pongo_abelii
ENSXETG00000016239	ybx3	66	61.111	ENSPCAG00000001397	YBX3	72	63.084	Procavia_capensis
ENSXETG00000016239	ybx3	94	46.497	ENSPVAG00000006740	YBX3	77	50.000	Pteropus_vampyrus
ENSXETG00000016239	ybx3	86	83.810	ENSRNOG00000005480	Ybx3	74	73.182	Rattus_norvegicus
ENSXETG00000016239	ybx3	90	65.179	ENSRBIG00000039208	YBX3	73	71.622	Rhinopithecus_bieti
ENSXETG00000016239	ybx3	90	65.044	ENSRROG00000029638	YBX3	73	71.622	Rhinopithecus_roxellana
ENSXETG00000016239	ybx3	89	68.919	ENSSBOG00000030573	YBX3	56	92.045	Saimiri_boliviensis_boliviensis
ENSXETG00000016239	ybx3	56	83.571	ENSSPUG00000009911	-	67	83.099	Sphenodon_punctatus
ENSXETG00000016239	ybx3	89	69.369	ENSSSCG00000000633	YBX3	52	92.222	Sus_scrofa
ENSXETG00000016239	ybx3	78	92.593	ENSTGUG00000012047	YBX3	69	93.023	Taeniopygia_guttata
ENSXETG00000016239	ybx3	91	52.145	ENSTBEG00000012570	YBX3	54	90.000	Tupaia_belangeri
ENSXETG00000016239	ybx3	82	50.000	ENSTTRG00000008045	YBX3	99	57.143	Tursiops_truncatus
ENSXETG00000016239	ybx3	87	52.740	ENSUAMG00000016662	YBX3	99	56.690	Ursus_americanus
ENSXETG00000016239	ybx3	89	53.846	ENSUMAG00000016118	YBX3	64	92.045	Ursus_maritimus
ENSXETG00000016239	ybx3	87	51.712	ENSVVUG00000004956	YBX3	90	63.889	Vulpes_vulpes