EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000017313 (Gene tree)
Gene ID: -
Gene Symbol: srl
Alias: -
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 33071 bases
Position: chrGL172663.1:1845767-1878837
Accession: XB-GENE-981745
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000037692	MMR_HSR1	PF01926.23	2.4e-08	1	1
ENSXETP00000063858	MMR_HSR1	PF01926.23	2.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000037692	-	3189	XM_002932431	ENSXETP00000037692	451 (aa)	XP_002932477	F7CF01
ENSXETT00000060805	-	3193	-	ENSXETP00000063858	471 (aa)	-	F7DNF4

Gene Model

Click here to download ENSXETG00000017313's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000017313's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000017313	srl	88	33.499	ENSXETG00000022070	ehd3	73	33.499
ENSXETG00000017313	srl	80	33.333	ENSXETG00000001638	ehd1	66	33.333
ENSXETG00000017313	srl	77	35.920	ENSXETG00000002783	ehd2	65	35.475
ENSXETG00000017313	srl	64	37.024	ENSXETG00000015794	ehd4	53	37.024

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000017313	srl	100	88.717	ENSG00000185739	SRL	99	90.698	Homo_sapiens
ENSXETG00000017313	srl	99	81.637	ENSAPOG00000018093	srl	99	82.540	Acanthochromis_polyacanthus
ENSXETG00000017313	srl	98	76.975	ENSAPOG00000012432	SRL	99	76.975	Acanthochromis_polyacanthus
ENSXETG00000017313	srl	100	89.381	ENSAMEG00000010862	SRL	52	88.621	Ailuropoda_melanoleuca
ENSXETG00000017313	srl	99	81.153	ENSACIG00000015799	srl	100	81.153	Amphilophus_citrinellus
ENSXETG00000017313	srl	98	75.676	ENSACIG00000015419	SRL	99	75.676	Amphilophus_citrinellus
ENSXETG00000017313	srl	96	82.448	ENSAOCG00000007574	srl	99	82.448	Amphiprion_ocellaris
ENSXETG00000017313	srl	98	76.577	ENSAOCG00000017049	SRL	97	76.577	Amphiprion_ocellaris
ENSXETG00000017313	srl	98	72.686	ENSAPEG00000006533	SRL	96	73.198	Amphiprion_percula
ENSXETG00000017313	srl	99	81.416	ENSAPEG00000006911	srl	99	78.891	Amphiprion_percula
ENSXETG00000017313	srl	98	73.684	ENSATEG00000009643	SRL	52	74.123	Anabas_testudineus
ENSXETG00000017313	srl	98	82.393	ENSATEG00000024315	srl	99	79.318	Anabas_testudineus
ENSXETG00000017313	srl	98	89.625	ENSACAG00000016380	SRL	88	85.833	Anolis_carolinensis
ENSXETG00000017313	srl	99	82.143	ENSACLG00000027685	srl	98	82.143	Astatotilapia_calliptera
ENSXETG00000017313	srl	98	73.523	ENSACLG00000024674	SRL	55	75.735	Astatotilapia_calliptera
ENSXETG00000017313	srl	99	82.366	ENSAMXG00000018789	srl	92	79.915	Astyanax_mexicanus
ENSXETG00000017313	srl	92	76.867	ENSAMXG00000038693	SRL	100	72.406	Astyanax_mexicanus
ENSXETG00000017313	srl	99	88.027	ENSBTAG00000001078	SRL	57	88.027	Bos_taurus
ENSXETG00000017313	srl	98	90.045	ENSCJAG00000019750	SRL	98	87.257	Callithrix_jacchus
ENSXETG00000017313	srl	100	88.938	ENSCAFG00000019233	SRL	84	88.938	Canis_familiaris
ENSXETG00000017313	srl	100	88.938	ENSCAFG00020025024	SRL	56	88.987	Canis_lupus_dingo
ENSXETG00000017313	srl	99	88.027	ENSCHIG00000017927	SRL	56	88.027	Capra_hircus
ENSXETG00000017313	srl	100	89.602	ENSTSYG00000007919	SRL	99	91.395	Carlito_syrichta
ENSXETG00000017313	srl	100	88.938	ENSCPOG00000012643	SRL	96	88.938	Cavia_porcellus
ENSXETG00000017313	srl	98	84.389	ENSCCAG00000032646	SRL	100	90.765	Cebus_capucinus
ENSXETG00000017313	srl	100	88.717	ENSCATG00000032227	-	98	87.257	Cercocebus_atys
ENSXETG00000017313	srl	100	88.717	ENSCLAG00000016242	SRL	96	88.717	Chinchilla_lanigera
ENSXETG00000017313	srl	85	91.948	ENSCHOG00000001618	SRL	52	91.948	Choloepus_hoffmanni
ENSXETG00000017313	srl	99	93.264	ENSCPBG00000026371	SRL	98	86.430	Chrysemys_picta_bellii
ENSXETG00000017313	srl	92	58.753	ENSCING00000005231	-	93	58.753	Ciona_intestinalis
ENSXETG00000017313	srl	100	88.717	ENSCANG00000035872	SRL	99	90.698	Colobus_angolensis_palliatus
ENSXETG00000017313	srl	100	89.159	ENSCGRG00001016630	Srl	96	89.159	Cricetulus_griseus_chok1gshd
ENSXETG00000017313	srl	100	89.159	ENSCGRG00000005458	Srl	96	89.159	Cricetulus_griseus_crigri
ENSXETG00000017313	srl	99	82.812	ENSCSEG00000016151	srl	99	80.342	Cynoglossus_semilaevis
ENSXETG00000017313	srl	100	72.124	ENSCSEG00000011866	SRL	92	71.397	Cynoglossus_semilaevis
ENSXETG00000017313	srl	98	75.442	ENSCVAG00000022465	SRL	60	75.442	Cyprinodon_variegatus
ENSXETG00000017313	srl	100	82.040	ENSCVAG00000003513	srl	97	82.222	Cyprinodon_variegatus
ENSXETG00000017313	srl	99	83.519	ENSDARG00000104587	srl	99	81.197	Danio_rerio
ENSXETG00000017313	srl	84	76.562	ENSDARG00000112959	CABZ01072309.1	100	76.562	Danio_rerio
ENSXETG00000017313	srl	99	89.357	ENSDNOG00000011643	SRL	54	89.183	Dasypus_novemcinctus
ENSXETG00000017313	srl	100	88.717	ENSDORG00000014807	Srl	96	88.717	Dipodomys_ordii
ENSXETG00000017313	srl	82	64.628	ENSEBUG00000015937	srl	95	64.628	Eptatretus_burgeri
ENSXETG00000017313	srl	99	89.111	ENSEASG00005000942	SRL	54	88.914	Equus_asinus_asinus
ENSXETG00000017313	srl	99	89.111	ENSECAG00000024219	SRL	97	87.636	Equus_caballus
ENSXETG00000017313	srl	99	79.318	ENSELUG00000015616	srl	99	77.479	Esox_lucius
ENSXETG00000017313	srl	98	89.819	ENSFCAG00000022075	SRL	96	89.159	Felis_catus
ENSXETG00000017313	srl	99	89.778	ENSFALG00000004328	SRL	64	89.778	Ficedula_albicollis
ENSXETG00000017313	srl	100	89.381	ENSFDAG00000006199	SRL	98	87.905	Fukomys_damarensis
ENSXETG00000017313	srl	98	76.471	ENSFHEG00000011854	SRL	98	76.471	Fundulus_heteroclitus
ENSXETG00000017313	srl	100	81.153	ENSFHEG00000011239	srl	97	81.333	Fundulus_heteroclitus
ENSXETG00000017313	srl	98	80.396	ENSGMOG00000014954	srl	100	80.396	Gadus_morhua
ENSXETG00000017313	srl	99	89.556	ENSGALG00000038884	SRL	98	87.284	Gallus_gallus
ENSXETG00000017313	srl	98	76.471	ENSGAFG00000016984	SRL	98	76.471	Gambusia_affinis
ENSXETG00000017313	srl	99	82.472	ENSGAFG00000000010	srl	99	81.046	Gambusia_affinis
ENSXETG00000017313	srl	98	80.396	ENSGACG00000011332	srl	99	80.574	Gasterosteus_aculeatus
ENSXETG00000017313	srl	100	88.717	ENSGGOG00000011312	-	98	87.257	Gorilla_gorilla
ENSXETG00000017313	srl	99	82.143	ENSHBUG00000007581	srl	98	82.143	Haplochromis_burtoni
ENSXETG00000017313	srl	98	73.304	ENSHBUG00000015710	SRL	57	73.304	Haplochromis_burtoni
ENSXETG00000017313	srl	100	89.602	ENSHGLG00000015271	SRL	96	89.602	Heterocephalus_glaber_female
ENSXETG00000017313	srl	100	89.602	ENSHGLG00100019378	SRL	96	89.602	Heterocephalus_glaber_male
ENSXETG00000017313	srl	99	81.250	ENSHCOG00000008687	srl	99	81.250	Hippocampus_comes
ENSXETG00000017313	srl	99	73.085	ENSHCOG00000001012	SRL	50	73.348	Hippocampus_comes
ENSXETG00000017313	srl	97	69.495	ENSIPUG00000011609	SRL	95	69.495	Ictalurus_punctatus
ENSXETG00000017313	srl	99	81.069	ENSIPUG00000012513	srl	99	78.419	Ictalurus_punctatus
ENSXETG00000017313	srl	100	89.381	ENSSTOG00000021151	-	96	89.381	Ictidomys_tridecemlineatus
ENSXETG00000017313	srl	100	89.381	ENSJJAG00000016400	Srl	96	89.381	Jaculus_jaculus
ENSXETG00000017313	srl	98	77.098	ENSKMAG00000019537	SRL	100	77.098	Kryptolebias_marmoratus
ENSXETG00000017313	srl	97	80.909	ENSKMAG00000014115	srl	93	83.373	Kryptolebias_marmoratus
ENSXETG00000017313	srl	98	76.471	ENSLBEG00000013811	SRL	95	76.471	Labrus_bergylta
ENSXETG00000017313	srl	99	81.737	ENSLBEG00000026643	srl	99	79.104	Labrus_bergylta
ENSXETG00000017313	srl	100	85.366	ENSLACG00000002825	SRL	100	85.177	Latimeria_chalumnae
ENSXETG00000017313	srl	100	84.257	ENSLOCG00000002644	srl	100	82.090	Lepisosteus_oculatus
ENSXETG00000017313	srl	100	89.159	ENSLAFG00000006329	SRL	52	88.235	Loxodonta_africana
ENSXETG00000017313	srl	95	90.698	ENSMFAG00000037383	SRL	99	90.698	Macaca_fascicularis
ENSXETG00000017313	srl	100	88.938	ENSMNEG00000019236	-	97	88.403	Macaca_nemestrina
ENSXETG00000017313	srl	100	81.195	ENSMLEG00000032156	SRL	98	79.914	Mandrillus_leucophaeus
ENSXETG00000017313	srl	98	74.342	ENSMAMG00000013756	SRL	53	74.454	Mastacembelus_armatus
ENSXETG00000017313	srl	98	82.167	ENSMAMG00000023322	srl	100	79.025	Mastacembelus_armatus
ENSXETG00000017313	srl	99	82.143	ENSMZEG00005004548	srl	98	82.143	Maylandia_zebra
ENSXETG00000017313	srl	98	73.523	ENSMZEG00005004010	SRL	57	73.523	Maylandia_zebra
ENSXETG00000017313	srl	99	89.333	ENSMGAG00000009342	SRL	95	90.400	Meleagris_gallopavo
ENSXETG00000017313	srl	100	89.602	ENSMICG00000032307	SRL	96	89.602	Microcebus_murinus
ENSXETG00000017313	srl	100	88.496	ENSMOCG00000008208	Srl	96	88.496	Microtus_ochrogaster
ENSXETG00000017313	srl	98	73.465	ENSMMOG00000021572	SRL	99	73.465	Mola_mola
ENSXETG00000017313	srl	98	81.674	ENSMMOG00000013970	srl	100	80.176	Mola_mola
ENSXETG00000017313	srl	99	89.556	ENSMODG00000016380	-	51	89.556	Monodelphis_domestica
ENSXETG00000017313	srl	93	77.327	ENSMALG00000000670	SRL	98	77.327	Monopterus_albus
ENSXETG00000017313	srl	98	81.264	ENSMALG00000005039	srl	98	81.264	Monopterus_albus
ENSXETG00000017313	srl	100	89.602	MGP_CAROLIEiJ_G0020400	Srl	96	89.602	Mus_caroli
ENSXETG00000017313	srl	100	89.602	ENSMUSG00000022519	Srl	96	89.602	Mus_musculus
ENSXETG00000017313	srl	98	90.498	MGP_PahariEiJ_G0016108	Srl	50	88.017	Mus_pahari
ENSXETG00000017313	srl	100	89.602	MGP_SPRETEiJ_G0021294	Srl	96	89.602	Mus_spretus
ENSXETG00000017313	srl	100	89.159	ENSMPUG00000015025	SRL	55	89.159	Mustela_putorius_furo
ENSXETG00000017313	srl	100	89.381	ENSMLUG00000030733	SRL	57	89.381	Myotis_lucifugus
ENSXETG00000017313	srl	100	89.159	ENSNGAG00000019741	Srl	96	89.159	Nannospalax_galili
ENSXETG00000017313	srl	98	73.085	ENSNBRG00000002422	SRL	60	70.450	Neolamprologus_brichardi
ENSXETG00000017313	srl	99	81.416	ENSNBRG00000023775	srl	97	81.099	Neolamprologus_brichardi
ENSXETG00000017313	srl	100	82.522	ENSNLEG00000029051	SRL	95	82.522	Nomascus_leucogenys
ENSXETG00000017313	srl	100	83.186	ENSOPRG00000000477	-	54	82.430	Ochotona_princeps
ENSXETG00000017313	srl	100	88.938	ENSODEG00000013256	SRL	96	88.938	Octodon_degus
ENSXETG00000017313	srl	99	81.920	ENSONIG00000005192	srl	98	80.000	Oreochromis_niloticus
ENSXETG00000017313	srl	100	88.938	ENSOCUG00000025140	SRL	50	88.938	Oryctolagus_cuniculus
ENSXETG00000017313	srl	98	81.941	ENSORLG00000008291	srl	92	84.794	Oryzias_latipes
ENSXETG00000017313	srl	99	74.554	ENSORLG00000015064	SRL	98	74.554	Oryzias_latipes
ENSXETG00000017313	srl	99	74.777	ENSORLG00020018173	SRL	98	74.777	Oryzias_latipes_hni
ENSXETG00000017313	srl	98	81.674	ENSORLG00020019784	srl	85	78.465	Oryzias_latipes_hni
ENSXETG00000017313	srl	99	74.777	ENSORLG00015019063	SRL	98	74.777	Oryzias_latipes_hsok
ENSXETG00000017313	srl	98	81.038	ENSORLG00015009342	srl	96	78.038	Oryzias_latipes_hsok
ENSXETG00000017313	srl	98	81.591	ENSOMEG00000010006	srl	98	81.591	Oryzias_melastigma
ENSXETG00000017313	srl	98	73.026	ENSOMEG00000005682	SRL	53	73.144	Oryzias_melastigma
ENSXETG00000017313	srl	100	88.938	ENSOGAG00000029266	SRL	55	88.938	Otolemur_garnettii
ENSXETG00000017313	srl	99	88.027	ENSOARG00000003074	SRL	57	88.027	Ovis_aries
ENSXETG00000017313	srl	100	88.717	ENSPPAG00000024919	-	99	90.698	Pan_paniscus
ENSXETG00000017313	srl	98	90.045	ENSPPRG00000010274	SRL	99	90.698	Panthera_pardus
ENSXETG00000017313	srl	98	90.045	ENSPTIG00000015162	SRL	99	90.698	Panthera_tigris_altaica
ENSXETG00000017313	srl	100	88.717	ENSPTRG00000007712	SRL	99	90.698	Pan_troglodytes
ENSXETG00000017313	srl	100	88.717	ENSPANG00000013804	SRL	100	87.312	Papio_anubis
ENSXETG00000017313	srl	98	76.018	ENSPKIG00000024974	SRL	88	76.018	Paramormyrops_kingsleyae
ENSXETG00000017313	srl	99	82.262	ENSPKIG00000006405	srl	99	79.618	Paramormyrops_kingsleyae
ENSXETG00000017313	srl	99	89.556	ENSPSIG00000008586	SRL	50	89.556	Pelodiscus_sinensis
ENSXETG00000017313	srl	99	82.851	ENSPMGG00000021081	srl	97	82.851	Periophthalmus_magnuspinnatus
ENSXETG00000017313	srl	98	73.982	ENSPMGG00000023505	-	99	73.982	Periophthalmus_magnuspinnatus
ENSXETG00000017313	srl	100	88.717	ENSPEMG00000015842	Srl	96	88.717	Peromyscus_maniculatus_bairdii
ENSXETG00000017313	srl	93	66.743	ENSPMAG00000004786	srl	99	66.743	Petromyzon_marinus
ENSXETG00000017313	srl	99	89.333	ENSPCIG00000012128	SRL	99	89.135	Phascolarctos_cinereus
ENSXETG00000017313	srl	99	80.306	ENSPFOG00000011408	srl	98	77.339	Poecilia_formosa
ENSXETG00000017313	srl	99	82.247	ENSPLAG00000008017	srl	99	80.828	Poecilia_latipinna
ENSXETG00000017313	srl	98	75.113	ENSPLAG00000002932	SRL	98	75.113	Poecilia_latipinna
ENSXETG00000017313	srl	99	82.247	ENSPMEG00000006745	srl	99	80.828	Poecilia_mexicana
ENSXETG00000017313	srl	98	73.304	ENSPMEG00000005890	SRL	59	73.626	Poecilia_mexicana
ENSXETG00000017313	srl	99	82.022	ENSPREG00000007751	srl	99	82.022	Poecilia_reticulata
ENSXETG00000017313	srl	98	76.018	ENSPREG00000000315	SRL	98	76.018	Poecilia_reticulata
ENSXETG00000017313	srl	93	90.931	ENSPPYG00000007053	SRL	98	90.931	Pongo_abelii
ENSXETG00000017313	srl	99	88.914	ENSPCAG00000003378	-	51	88.914	Procavia_capensis
ENSXETG00000017313	srl	100	89.602	ENSPCOG00000023135	SRL	99	91.163	Propithecus_coquereli
ENSXETG00000017313	srl	99	89.207	ENSPVAG00000006586	SRL	56	89.207	Pteropus_vampyrus
ENSXETG00000017313	srl	98	73.523	ENSPNYG00000003423	SRL	57	73.523	Pundamilia_nyererei
ENSXETG00000017313	srl	99	82.143	ENSPNYG00000001200	srl	98	82.143	Pundamilia_nyererei
ENSXETG00000017313	srl	99	74.497	ENSPNAG00000007361	-	92	74.497	Pygocentrus_nattereri
ENSXETG00000017313	srl	99	81.514	ENSPNAG00000023106	srl	99	78.891	Pygocentrus_nattereri
ENSXETG00000017313	srl	100	89.159	ENSRNOG00000005269	Srl	50	89.159	Rattus_norvegicus
ENSXETG00000017313	srl	100	88.717	ENSRBIG00000042358	SRL	50	88.717	Rhinopithecus_bieti
ENSXETG00000017313	srl	98	90.045	ENSSBOG00000029273	SRL	98	87.257	Saimiri_boliviensis_boliviensis
ENSXETG00000017313	srl	99	89.111	ENSSHAG00000011715	-	51	89.111	Sarcophilus_harrisii
ENSXETG00000017313	srl	98	75.566	ENSSFOG00015021327	SRL	51	74.123	Scleropages_formosus
ENSXETG00000017313	srl	98	82.353	ENSSFOG00015009773	srl	99	78.846	Scleropages_formosus
ENSXETG00000017313	srl	99	81.292	ENSSMAG00000016274	srl	98	81.292	Scophthalmus_maximus
ENSXETG00000017313	srl	98	73.846	ENSSMAG00000002232	SRL	50	74.066	Scophthalmus_maximus
ENSXETG00000017313	srl	98	76.392	ENSSDUG00000009161	SRL	98	76.392	Seriola_dumerili
ENSXETG00000017313	srl	98	82.619	ENSSDUG00000010808	srl	98	82.619	Seriola_dumerili
ENSXETG00000017313	srl	99	82.183	ENSSLDG00000022024	srl	97	82.183	Seriola_lalandi_dorsalis
ENSXETG00000017313	srl	98	75.930	ENSSLDG00000014601	SRL	99	75.930	Seriola_lalandi_dorsalis
ENSXETG00000017313	srl	99	88.914	ENSSPUG00000016859	SRL	99	88.914	Sphenodon_punctatus
ENSXETG00000017313	srl	99	81.818	ENSSPAG00000019105	srl	99	79.406	Stegastes_partitus
ENSXETG00000017313	srl	98	77.427	ENSSPAG00000014254	SRL	99	77.427	Stegastes_partitus
ENSXETG00000017313	srl	99	88.989	ENSSSCG00000007949	SRL	99	88.989	Sus_scrofa
ENSXETG00000017313	srl	99	90.000	ENSTGUG00000003951	-	99	90.000	Taeniopygia_guttata
ENSXETG00000017313	srl	80	92.541	ENSTGUG00000016121	-	100	92.541	Taeniopygia_guttata
ENSXETG00000017313	srl	93	76.611	ENSTRUG00000013310	SRL	55	76.611	Takifugu_rubripes
ENSXETG00000017313	srl	98	82.393	ENSTRUG00000006005	srl	99	79.274	Takifugu_rubripes
ENSXETG00000017313	srl	98	82.167	ENSTNIG00000009739	srl	99	79.570	Tetraodon_nigroviridis
ENSXETG00000017313	srl	100	89.381	ENSUAMG00000005701	SRL	56	89.381	Ursus_americanus
ENSXETG00000017313	srl	100	89.381	ENSUMAG00000002574	SRL	56	89.381	Ursus_maritimus
ENSXETG00000017313	srl	100	88.938	ENSVVUG00000016331	-	50	88.987	Vulpes_vulpes
ENSXETG00000017313	srl	93	84.086	ENSXCOG00000010424	srl	97	84.086	Xiphophorus_couchianus
ENSXETG00000017313	srl	98	75.792	ENSXCOG00000014584	SRL	98	75.792	Xiphophorus_couchianus
ENSXETG00000017313	srl	98	73.846	ENSXMAG00000027598	SRL	62	73.961	Xiphophorus_maculatus
ENSXETG00000017313	srl	99	82.472	ENSXMAG00000004625	srl	95	80.300	Xiphophorus_maculatus