EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000017744 (Gene tree)
Gene ID: -
Gene Symbol: 42Sp50
Alias: -
Full Name: Xenopus tropicalis Elongation factor 1-alpha (42Sp50)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 5512 bases
Position: chrGL173095.1:262215-267726
Accession: NM_001011438
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000038508	GTP_EFTU	PF00009.27	1.4e-54	1	1
ENSXETP00000038508	MMR_HSR1	PF01926.23	6.7e-06	1	1
ENSXETP00000038508	GTP_EFTU_D2	PF03144.25	3e-13	1	1
ENSXETP00000038508	GTP_EFTU_D3	PF03143.17	6.9e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000038508	-	1561	-	ENSXETP00000038508	463 (aa)	-	Q5I0C1

Gene Model

Click here to download ENSXETG00000017744's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000017744's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000017744	42Sp50	98	72.907	ENSXETG00000019567	eef1a2	95	73.923
ENSXETG00000017744	42Sp50	94	36.446	ENSXETG00000005540	gspt1	76	36.136
ENSXETG00000017744	42Sp50	94	37.900	ENSXETG00000003726	hbs1l	63	37.813
ENSXETG00000017744	42Sp50	98	71.366	ENSXETG00000001182	eef1a1	95	72.336
ENSXETG00000017744	42Sp50	97	70.917	ENSXETG00000022604	eef1a1o	96	71.655

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000017744	42Sp50	95	76.484	ENSAPOG00000016459	si:dkey-37o8.1	96	76.484	Acanthochromis_polyacanthus
ENSXETG00000017744	42Sp50	98	70.742	ENSACIG00000020985	si:dkey-37o8.1	81	73.272	Amphilophus_citrinellus
ENSXETG00000017744	42Sp50	97	75.831	ENSAOCG00000002663	si:dkey-37o8.1	96	77.626	Amphiprion_ocellaris
ENSXETG00000017744	42Sp50	97	75.831	ENSAPEG00000012670	si:dkey-37o8.1	96	77.626	Amphiprion_percula
ENSXETG00000017744	42Sp50	90	77.088	ENSATEG00000002217	si:dkey-37o8.1	98	77.088	Anabas_testudineus
ENSXETG00000017744	42Sp50	96	74.775	ENSACLG00000003519	si:dkey-37o8.1	96	75.399	Astatotilapia_calliptera
ENSXETG00000017744	42Sp50	95	78.360	ENSAMXG00000002728	si:dkey-37o8.1	96	78.360	Astyanax_mexicanus
ENSXETG00000017744	42Sp50	99	77.681	ENSCPBG00000020570	-	90	77.681	Chrysemys_picta_bellii
ENSXETG00000017744	42Sp50	96	72.098	ENSCSEG00000019807	si:dkey-37o8.1	96	72.584	Cynoglossus_semilaevis
ENSXETG00000017744	42Sp50	97	73.836	ENSCVAG00000009828	si:dkey-37o8.1	96	75.399	Cyprinodon_variegatus
ENSXETG00000017744	42Sp50	98	71.586	ENSDARG00000071727	si:dkey-37o8.1	91	73.121	Danio_rerio
ENSXETG00000017744	42Sp50	98	75.664	ENSELUG00000007495	si:dkey-37o8.1	96	76.993	Esox_lucius
ENSXETG00000017744	42Sp50	97	74.501	ENSFHEG00000017452	si:dkey-37o8.1	96	75.854	Fundulus_heteroclitus
ENSXETG00000017744	42Sp50	97	70.288	ENSGMOG00000006122	si:dkey-37o8.1	97	71.982	Gadus_morhua
ENSXETG00000017744	42Sp50	96	70.045	ENSGAFG00000000367	si:dkey-37o8.1	97	70.615	Gambusia_affinis
ENSXETG00000017744	42Sp50	99	72.867	ENSGACG00000004505	si:dkey-37o8.1	99	72.867	Gasterosteus_aculeatus
ENSXETG00000017744	42Sp50	99	78.556	ENSGAGG00000007724	-	98	83.810	Gopherus_agassizii
ENSXETG00000017744	42Sp50	96	75.000	ENSHBUG00000015515	si:dkey-37o8.1	96	75.626	Haplochromis_burtoni
ENSXETG00000017744	42Sp50	95	71.298	ENSHCOG00000001215	si:dkey-37o8.1	97	71.298	Hippocampus_comes
ENSXETG00000017744	42Sp50	99	75.930	ENSIPUG00000004067	si:dkey-37o8.1	96	77.449	Ictalurus_punctatus
ENSXETG00000017744	42Sp50	97	74.723	ENSKMAG00000015910	si:dkey-37o8.1	96	76.082	Kryptolebias_marmoratus
ENSXETG00000017744	42Sp50	95	76.993	ENSLBEG00000021334	si:dkey-37o8.1	87	76.993	Labrus_bergylta
ENSXETG00000017744	42Sp50	98	78.242	ENSLACG00000003948	si:dkey-37o8.1	99	78.242	Latimeria_chalumnae
ENSXETG00000017744	42Sp50	97	76.053	ENSLOCG00000011245	si:dkey-37o8.1	95	77.626	Lepisosteus_oculatus
ENSXETG00000017744	42Sp50	97	68.736	ENSMAMG00000009907	si:dkey-37o8.1	92	69.863	Mastacembelus_armatus
ENSXETG00000017744	42Sp50	96	74.775	ENSMZEG00005018358	si:dkey-37o8.1	96	75.399	Maylandia_zebra
ENSXETG00000017744	42Sp50	97	74.049	ENSMMOG00000004111	si:dkey-37o8.1	96	75.171	Mola_mola
ENSXETG00000017744	42Sp50	94	73.973	ENSMALG00000017152	si:dkey-37o8.1	99	73.973	Monopterus_albus
ENSXETG00000017744	42Sp50	96	74.775	ENSNBRG00000013552	si:dkey-37o8.1	96	75.399	Neolamprologus_brichardi
ENSXETG00000017744	42Sp50	96	74.775	ENSONIG00000006165	si:dkey-37o8.1	96	75.399	Oreochromis_niloticus
ENSXETG00000017744	42Sp50	97	74.554	ENSORLG00000019066	si:dkey-37o8.1	96	75.626	Oryzias_latipes
ENSXETG00000017744	42Sp50	97	74.554	ENSORLG00020008094	si:dkey-37o8.1	96	75.626	Oryzias_latipes_hni
ENSXETG00000017744	42Sp50	97	74.554	ENSORLG00015008410	si:dkey-37o8.1	96	75.626	Oryzias_latipes_hsok
ENSXETG00000017744	42Sp50	97	75.000	ENSOMEG00000001868	si:dkey-37o8.1	96	76.310	Oryzias_melastigma
ENSXETG00000017744	42Sp50	95	76.765	ENSPKIG00000017246	si:dkey-37o8.1	96	76.765	Paramormyrops_kingsleyae
ENSXETG00000017744	42Sp50	60	72.792	ENSPSIG00000008080	-	99	72.792	Pelodiscus_sinensis
ENSXETG00000017744	42Sp50	97	74.058	ENSPFOG00000013173	si:dkey-37o8.1	96	75.399	Poecilia_formosa
ENSXETG00000017744	42Sp50	95	73.516	ENSPLAG00000010405	si:dkey-37o8.1	96	74.715	Poecilia_latipinna
ENSXETG00000017744	42Sp50	97	74.501	ENSPMEG00000015233	si:dkey-37o8.1	96	75.854	Poecilia_mexicana
ENSXETG00000017744	42Sp50	97	73.392	ENSPREG00000006280	si:dkey-37o8.1	97	74.715	Poecilia_reticulata
ENSXETG00000017744	42Sp50	96	74.775	ENSPNYG00000002059	si:dkey-37o8.1	96	75.399	Pundamilia_nyererei
ENSXETG00000017744	42Sp50	99	77.024	ENSPNAG00000009990	si:dkey-37o8.1	96	78.588	Pygocentrus_nattereri
ENSXETG00000017744	42Sp50	97	75.556	ENSSFOG00015019070	si:dkey-37o8.1	96	76.256	Scleropages_formosus
ENSXETG00000017744	42Sp50	96	76.577	ENSSMAG00000016143	si:dkey-37o8.1	96	77.221	Scophthalmus_maximus
ENSXETG00000017744	42Sp50	97	76.497	ENSSDUG00000009163	si:dkey-37o8.1	96	78.132	Seriola_dumerili
ENSXETG00000017744	42Sp50	97	76.718	ENSSLDG00000023761	si:dkey-37o8.1	96	78.360	Seriola_lalandi_dorsalis
ENSXETG00000017744	42Sp50	100	75.699	ENSSPUG00000007467	-	100	75.699	Sphenodon_punctatus
ENSXETG00000017744	42Sp50	95	77.626	ENSSPAG00000013856	si:dkey-37o8.1	96	77.626	Stegastes_partitus
ENSXETG00000017744	42Sp50	96	75.676	ENSTRUG00000009006	si:dkey-37o8.1	98	76.310	Takifugu_rubripes
ENSXETG00000017744	42Sp50	96	75.000	ENSTNIG00000017138	si:dkey-37o8.1	95	75.626	Tetraodon_nigroviridis
ENSXETG00000017744	42Sp50	97	73.836	ENSXCOG00000012296	si:dkey-37o8.1	97	75.171	Xiphophorus_couchianus
ENSXETG00000017744	42Sp50	97	74.279	ENSXMAG00000001998	si:dkey-37o8.1	96	75.626	Xiphophorus_maculatus