EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000017937 (Gene tree)
Gene ID: -
Gene Symbol: srsf5a
Alias: -
Full Name: serine/arginine-rich splicing factor 5 alpha
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 9829 bases
Position: chrGL172781.1:680098-689926
Accession: XB-GENE-5954653
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000038885	RRM_1	PF00076.22	7.1e-33	1	2
ENSXETP00000038885	RRM_1	PF00076.22	7.1e-33	2	2
ENSXETP00000022818	RRM_1	PF00076.22	9.3e-33	1	2
ENSXETP00000022818	RRM_1	PF00076.22	9.3e-33	2	2
ENSXETP00000038885	RRM_3	PF08777.11	1e-07	1	1
ENSXETP00000022818	RRM_3	PF08777.11	2.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000038885	-	1650	XM_012968195	ENSXETP00000038885	262 (aa)	XP_012823649	Q6GL71
ENSXETT00000022818	-	1719	-	ENSXETP00000022818	285 (aa)	-	F6UTD6

Gene Model

Click here to download ENSXETG00000017937's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000017937's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000017937	srsf5a	73	70.000	ENSXETG00000002211	srsf5	99	57.840
ENSXETG00000017937	srsf5a	67	45.161	ENSXETG00000008954	srsf1	67	46.154
ENSXETG00000017937	srsf5a	66	39.227	ENSXETG00000026940	srsf9	71	38.251

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000017937	srsf5a	72	77.128	ENSAPOG00000017395	srsf5a	99	62.162	Acanthochromis_polyacanthus
ENSXETG00000017937	srsf5a	72	80.851	ENSACIG00000011892	srsf5a	96	80.741	Amphilophus_citrinellus
ENSXETG00000017937	srsf5a	72	77.660	ENSAOCG00000014967	srsf5a	62	80.851	Amphiprion_ocellaris
ENSXETG00000017937	srsf5a	72	77.660	ENSAPEG00000009297	srsf5a	62	80.851	Amphiprion_percula
ENSXETG00000017937	srsf5a	72	81.915	ENSATEG00000000198	srsf5a	65	81.915	Anabas_testudineus
ENSXETG00000017937	srsf5a	72	78.947	ENSAPLG00000002469	-	100	71.642	Anas_platyrhynchos
ENSXETG00000017937	srsf5a	90	71.429	ENSACAG00000029015	-	100	72.826	Anolis_carolinensis
ENSXETG00000017937	srsf5a	72	78.125	ENSACLG00000027166	srsf5a	99	62.542	Astatotilapia_calliptera
ENSXETG00000017937	srsf5a	72	82.540	ENSAMXG00000030476	srsf5a	72	78.607	Astyanax_mexicanus
ENSXETG00000017937	srsf5a	89	81.624	ENSCPBG00000021518	-	100	77.444	Chrysemys_picta_bellii
ENSXETG00000017937	srsf5a	72	57.653	ENSCSAVG00000011376	-	83	55.769	Ciona_savignyi
ENSXETG00000017937	srsf5a	72	77.835	ENSCSEG00000008109	srsf5a	85	66.791	Cynoglossus_semilaevis
ENSXETG00000017937	srsf5a	70	72.340	ENSCVAG00000016982	srsf5a	96	67.376	Cyprinodon_variegatus
ENSXETG00000017937	srsf5a	73	80.628	ENSDARG00000029818	srsf5a	95	84.733	Danio_rerio
ENSXETG00000017937	srsf5a	72	81.347	ENSELUG00000020439	srsf5a	66	78.431	Esox_lucius
ENSXETG00000017937	srsf5a	72	77.660	ENSFALG00000005098	-	99	66.323	Ficedula_albicollis
ENSXETG00000017937	srsf5a	71	70.500	ENSFHEG00000003955	srsf5a	97	68.966	Fundulus_heteroclitus
ENSXETG00000017937	srsf5a	72	74.468	ENSGMOG00000000869	srsf5a	94	76.596	Gadus_morhua
ENSXETG00000017937	srsf5a	72	77.660	ENSGALG00000033259	SRSF5A	99	66.436	Gallus_gallus
ENSXETG00000017937	srsf5a	72	67.553	ENSGAFG00000018237	srsf5a	99	54.088	Gambusia_affinis
ENSXETG00000017937	srsf5a	72	79.787	ENSGACG00000011761	srsf5a	76	76.733	Gasterosteus_aculeatus
ENSXETG00000017937	srsf5a	89	81.624	ENSGAGG00000007312	-	100	77.444	Gopherus_agassizii
ENSXETG00000017937	srsf5a	72	79.058	ENSHBUG00000014048	srsf5a	99	62.081	Haplochromis_burtoni
ENSXETG00000017937	srsf5a	72	80.851	ENSHCOG00000017557	srsf5a	65	77.387	Hippocampus_comes
ENSXETG00000017937	srsf5a	72	82.723	ENSIPUG00000003439	srsf5a	97	65.385	Ictalurus_punctatus
ENSXETG00000017937	srsf5a	72	73.958	ENSKMAG00000014937	srsf5a	99	60.494	Kryptolebias_marmoratus
ENSXETG00000017937	srsf5a	72	76.923	ENSLBEG00000017153	srsf5a	74	72.059	Labrus_bergylta
ENSXETG00000017937	srsf5a	89	79.487	ENSLACG00000017874	-	97	76.834	Latimeria_chalumnae
ENSXETG00000017937	srsf5a	72	83.069	ENSLOCG00000014075	srsf5a	92	68.085	Lepisosteus_oculatus
ENSXETG00000017937	srsf5a	72	79.787	ENSMAMG00000000192	srsf5a	99	60.870	Mastacembelus_armatus
ENSXETG00000017937	srsf5a	72	79.058	ENSMZEG00005010485	srsf5a	99	62.081	Maylandia_zebra
ENSXETG00000017937	srsf5a	76	75.622	ENSMGAG00000011888	-	96	76.471	Meleagris_gallopavo
ENSXETG00000017937	srsf5a	72	79.255	ENSMMOG00000009793	srsf5a	61	79.474	Mola_mola
ENSXETG00000017937	srsf5a	72	75.532	ENSMALG00000021194	srsf5a	63	76.064	Monopterus_albus
ENSXETG00000017937	srsf5a	72	79.474	ENSNBRG00000000771	srsf5a	99	62.290	Neolamprologus_brichardi
ENSXETG00000017937	srsf5a	72	79.474	ENSONIG00000019583	srsf5a	99	62.290	Oreochromis_niloticus
ENSXETG00000017937	srsf5a	72	77.487	ENSORLG00000009268	srsf5a	67	77.368	Oryzias_latipes
ENSXETG00000017937	srsf5a	72	77.487	ENSORLG00020003281	srsf5	67	77.368	Oryzias_latipes_hni
ENSXETG00000017937	srsf5a	72	77.487	ENSORLG00015023075	srsf5	67	77.368	Oryzias_latipes_hsok
ENSXETG00000017937	srsf5a	72	77.128	ENSOMEG00000000628	srsf5a	69	75.897	Oryzias_melastigma
ENSXETG00000017937	srsf5a	72	81.481	ENSPKIG00000002054	srsf5a	68	80.952	Paramormyrops_kingsleyae
ENSXETG00000017937	srsf5a	89	76.891	ENSPSIG00000008238	-	100	70.741	Pelodiscus_sinensis
ENSXETG00000017937	srsf5a	73	76.316	ENSPMGG00000020125	srsf5a	58	73.367	Periophthalmus_magnuspinnatus
ENSXETG00000017937	srsf5a	72	75.521	ENSPFOG00000022993	srsf5a	60	71.500	Poecilia_formosa
ENSXETG00000017937	srsf5a	71	75.393	ENSPLAG00000005508	srsf5a	60	70.500	Poecilia_latipinna
ENSXETG00000017937	srsf5a	72	75.521	ENSPMEG00000016339	srsf5a	60	71.500	Poecilia_mexicana
ENSXETG00000017937	srsf5a	72	75.130	ENSPREG00000018091	srsf5a	61	71.144	Poecilia_reticulata
ENSXETG00000017937	srsf5a	72	79.058	ENSPNYG00000021245	srsf5a	99	62.081	Pundamilia_nyererei
ENSXETG00000017937	srsf5a	72	80.851	ENSPNAG00000021333	srsf5a	70	77.114	Pygocentrus_nattereri
ENSXETG00000017937	srsf5a	72	83.069	ENSSFOG00015008377	srsf5	66	82.540	Scleropages_formosus
ENSXETG00000017937	srsf5a	72	76.617	ENSSMAG00000010899	srsf5a	66	77.612	Scophthalmus_maximus
ENSXETG00000017937	srsf5a	72	76.596	ENSSDUG00000006103	srsf5a	99	61.512	Seriola_dumerili
ENSXETG00000017937	srsf5a	72	76.596	ENSSLDG00000004146	srsf5a	99	62.329	Seriola_lalandi_dorsalis
ENSXETG00000017937	srsf5a	96	72.374	ENSSPUG00000002052	-	100	64.815	Sphenodon_punctatus
ENSXETG00000017937	srsf5a	72	77.660	ENSSPAG00000002821	srsf5a	99	62.126	Stegastes_partitus
ENSXETG00000017937	srsf5a	72	79.787	ENSTGUG00000011492	-	94	68.582	Taeniopygia_guttata
ENSXETG00000017937	srsf5a	72	77.202	ENSTRUG00000022908	srsf5a	65	79.793	Takifugu_rubripes
ENSXETG00000017937	srsf5a	72	71.282	ENSXCOG00000015338	srsf5a	61	71.282	Xiphophorus_couchianus
ENSXETG00000017937	srsf5a	72	76.289	ENSXMAG00000012823	srsf5a	61	75.897	Xiphophorus_maculatus