EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000017960 (Gene tree)
Gene ID: -
Gene Symbol: ythdc1
Alias: -
Full Name: Xenopus tropicalis YTH domain containing 1 (ythdc1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 28043 bases
Position: chrGL172850.1:1105309-1133351
Accession: NM_001008120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000054717	YTH	PF04146.15	1.1e-40	1	1
ENSXETP00000038938	YTH	PF04146.15	1.1e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000054717	-	3095	-	ENSXETP00000054717	673 (aa)	-	Q66IJ3
ENSXETT00000038938	-	3122	-	ENSXETP00000038938	682 (aa)	-	F6XU94

Gene Model

Click here to download ENSXETG00000017960's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000017960's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000017960	ythdc1	91	72.768	ENSG00000083896	YTHDC1	82	92.105	Homo_sapiens
ENSXETG00000017960	ythdc1	57	65.633	ENSAPOG00000013997	ythdc1	93	55.365	Acanthochromis_polyacanthus
ENSXETG00000017960	ythdc1	91	71.429	ENSAMEG00000005688	YTHDC1	92	73.185	Ailuropoda_melanoleuca
ENSXETG00000017960	ythdc1	71	64.524	ENSACIG00000019728	ythdc1	93	50.000	Amphilophus_citrinellus
ENSXETG00000017960	ythdc1	57	66.912	ENSAOCG00000000239	ythdc1	94	57.402	Amphiprion_ocellaris
ENSXETG00000017960	ythdc1	53	65.940	ENSAPEG00000000618	ythdc1	91	57.546	Amphiprion_percula
ENSXETG00000017960	ythdc1	52	65.470	ENSATEG00000023007	ythdc1	95	56.792	Anabas_testudineus
ENSXETG00000017960	ythdc1	91	78.019	ENSAPLG00000009921	YTHDC1	92	77.864	Anas_platyrhynchos
ENSXETG00000017960	ythdc1	93	74.363	ENSACAG00000009697	YTHDC1	93	74.586	Anolis_carolinensis
ENSXETG00000017960	ythdc1	91	72.699	ENSANAG00000001522	YTHDC1	92	74.036	Aotus_nancymaae
ENSXETG00000017960	ythdc1	57	64.951	ENSACLG00000019371	ythdc1	94	57.078	Astatotilapia_calliptera
ENSXETG00000017960	ythdc1	91	67.555	ENSAMXG00000006978	ythdc1	91	67.712	Astyanax_mexicanus
ENSXETG00000017960	ythdc1	91	71.493	ENSBTAG00000015572	YTHDC1	92	73.591	Bos_taurus
ENSXETG00000017960	ythdc1	91	72.546	ENSCJAG00000009934	YTHDC1	92	74.184	Callithrix_jacchus
ENSXETG00000017960	ythdc1	91	71.429	ENSCAFG00000002821	YTHDC1	92	73.185	Canis_familiaris
ENSXETG00000017960	ythdc1	91	71.429	ENSCAFG00020027112	YTHDC1	92	73.185	Canis_lupus_dingo
ENSXETG00000017960	ythdc1	91	68.779	ENSCHIG00000004810	YTHDC1	95	70.058	Capra_hircus
ENSXETG00000017960	ythdc1	91	72.917	ENSTSYG00000011668	YTHDC1	92	74.443	Carlito_syrichta
ENSXETG00000017960	ythdc1	90	54.389	ENSCAPG00000008722	YTHDC1	90	54.317	Cavia_aperea
ENSXETG00000017960	ythdc1	91	65.923	ENSCPOG00000010929	YTHDC1	91	66.865	Cavia_porcellus
ENSXETG00000017960	ythdc1	91	74.069	ENSCCAG00000035754	YTHDC1	92	74.516	Cebus_capucinus
ENSXETG00000017960	ythdc1	91	72.546	ENSCATG00000036320	YTHDC1	97	70.229	Cercocebus_atys
ENSXETG00000017960	ythdc1	91	73.412	ENSCLAG00000005482	YTHDC1	92	73.481	Chinchilla_lanigera
ENSXETG00000017960	ythdc1	91	72.090	ENSCSAG00000005252	YTHDC1	92	74.184	Chlorocebus_sabaeus
ENSXETG00000017960	ythdc1	92	78.537	ENSCPBG00000021965	YTHDC1	94	78.185	Chrysemys_picta_bellii
ENSXETG00000017960	ythdc1	91	72.546	ENSCANG00000004769	YTHDC1	97	70.019	Colobus_angolensis_palliatus
ENSXETG00000017960	ythdc1	91	73.235	ENSCGRG00001000816	Ythdc1	92	73.088	Cricetulus_griseus_chok1gshd
ENSXETG00000017960	ythdc1	91	74.030	ENSCGRG00000009807	Ythdc1	92	73.881	Cricetulus_griseus_crigri
ENSXETG00000017960	ythdc1	57	65.248	ENSCSEG00000020404	ythdc1	94	57.686	Cynoglossus_semilaevis
ENSXETG00000017960	ythdc1	57	65.083	ENSCVAG00000022349	ythdc1	94	56.815	Cyprinodon_variegatus
ENSXETG00000017960	ythdc1	91	67.035	ENSDARG00000051953	ythdc1	91	66.561	Danio_rerio
ENSXETG00000017960	ythdc1	91	73.692	ENSDNOG00000004949	YTHDC1	92	73.613	Dasypus_novemcinctus
ENSXETG00000017960	ythdc1	91	72.308	ENSDORG00000013045	Ythdc1	92	73.731	Dipodomys_ordii
ENSXETG00000017960	ythdc1	74	88.559	ENSETEG00000001878	YTHDC1	70	89.333	Echinops_telfairi
ENSXETG00000017960	ythdc1	91	71.726	ENSEASG00005018383	YTHDC1	92	72.741	Equus_asinus_asinus
ENSXETG00000017960	ythdc1	91	89.167	ENSECAG00000018303	YTHDC1	80	90.778	Equus_caballus
ENSXETG00000017960	ythdc1	91	71.513	ENSEEUG00000015466	YTHDC1	92	72.107	Erinaceus_europaeus
ENSXETG00000017960	ythdc1	91	63.567	ENSELUG00000014029	ythdc1	93	63.419	Esox_lucius
ENSXETG00000017960	ythdc1	91	71.822	ENSFCAG00000026791	YTHDC1	92	72.889	Felis_catus
ENSXETG00000017960	ythdc1	72	85.253	ENSFALG00000006581	YTHDC1	86	90.816	Ficedula_albicollis
ENSXETG00000017960	ythdc1	91	74.063	ENSFDAG00000018560	YTHDC1	92	73.913	Fukomys_damarensis
ENSXETG00000017960	ythdc1	92	41.807	ENSFHEG00000001286	ythdc1	93	42.550	Fundulus_heteroclitus
ENSXETG00000017960	ythdc1	59	73.246	ENSGMOG00000018815	ythdc1	68	73.246	Gadus_morhua
ENSXETG00000017960	ythdc1	91	77.623	ENSGALG00000035906	YTHDC1	85	77.554	Gallus_gallus
ENSXETG00000017960	ythdc1	68	72.549	ENSGACG00000015486	ythdc1	94	50.000	Gasterosteus_aculeatus
ENSXETG00000017960	ythdc1	92	79.107	ENSGAGG00000007108	YTHDC1	92	78.914	Gopherus_agassizii
ENSXETG00000017960	ythdc1	91	72.393	ENSGGOG00000021958	YTHDC1	97	70.095	Gorilla_gorilla
ENSXETG00000017960	ythdc1	57	64.951	ENSHBUG00000019288	ythdc1	93	57.078	Haplochromis_burtoni
ENSXETG00000017960	ythdc1	93	60.587	ENSHGLG00000003239	-	86	61.164	Heterocephalus_glaber_female
ENSXETG00000017960	ythdc1	91	73.373	ENSHGLG00000006319	-	92	73.225	Heterocephalus_glaber_female
ENSXETG00000017960	ythdc1	93	58.923	ENSHGLG00100008060	-	86	59.468	Heterocephalus_glaber_male
ENSXETG00000017960	ythdc1	91	73.105	ENSHGLG00100001556	-	92	72.957	Heterocephalus_glaber_male
ENSXETG00000017960	ythdc1	56	64.583	ENSHCOG00000001520	ythdc1	84	64.583	Hippocampus_comes
ENSXETG00000017960	ythdc1	91	65.777	ENSIPUG00000018136	ythdc1	91	65.649	Ictalurus_punctatus
ENSXETG00000017960	ythdc1	91	70.713	ENSSTOG00000013652	YTHDC1	92	72.981	Ictidomys_tridecemlineatus
ENSXETG00000017960	ythdc1	91	71.651	ENSJJAG00000010268	Ythdc1	93	74.107	Jaculus_jaculus
ENSXETG00000017960	ythdc1	57	65.122	ENSKMAG00000006483	ythdc1	85	68.537	Kryptolebias_marmoratus
ENSXETG00000017960	ythdc1	71	60.377	ENSLBEG00000020831	ythdc1	78	68.889	Labrus_bergylta
ENSXETG00000017960	ythdc1	86	66.822	ENSLACG00000004893	YTHDC1	92	68.504	Latimeria_chalumnae
ENSXETG00000017960	ythdc1	91	72.857	ENSLOCG00000003045	ythdc1	91	72.178	Lepisosteus_oculatus
ENSXETG00000017960	ythdc1	91	73.778	ENSLAFG00000021592	YTHDC1	99	75.357	Loxodonta_africana
ENSXETG00000017960	ythdc1	91	72.546	ENSMFAG00000031927	YTHDC1	97	70.019	Macaca_fascicularis
ENSXETG00000017960	ythdc1	91	72.546	ENSMMUG00000002265	YTHDC1	92	74.184	Macaca_mulatta
ENSXETG00000017960	ythdc1	91	72.546	ENSMNEG00000033751	YTHDC1	97	70.019	Macaca_nemestrina
ENSXETG00000017960	ythdc1	91	72.546	ENSMLEG00000042147	YTHDC1	97	70.019	Mandrillus_leucophaeus
ENSXETG00000017960	ythdc1	57	66.585	ENSMAMG00000013122	ythdc1	92	58.245	Mastacembelus_armatus
ENSXETG00000017960	ythdc1	57	64.951	ENSMZEG00005023173	ythdc1	93	57.078	Maylandia_zebra
ENSXETG00000017960	ythdc1	91	76.840	ENSMGAG00000010391	YTHDC1	91	77.335	Meleagris_gallopavo
ENSXETG00000017960	ythdc1	91	73.235	ENSMAUG00000001286	Ythdc1	92	73.088	Mesocricetus_auratus
ENSXETG00000017960	ythdc1	91	74.627	ENSMICG00000034640	YTHDC1	92	73.599	Microcebus_murinus
ENSXETG00000017960	ythdc1	91	73.887	ENSMOCG00000020201	Ythdc1	92	74.189	Microtus_ochrogaster
ENSXETG00000017960	ythdc1	76	52.311	ENSMMOG00000021200	ythdc1	92	51.142	Mola_mola
ENSXETG00000017960	ythdc1	91	75.076	ENSMODG00000020754	-	91	76.829	Monodelphis_domestica
ENSXETG00000017960	ythdc1	68	55.460	ENSMODG00000009173	-	84	58.081	Monodelphis_domestica
ENSXETG00000017960	ythdc1	96	54.160	ENSMODG00000014337	-	95	54.502	Monodelphis_domestica
ENSXETG00000017960	ythdc1	93	45.706	ENSMODG00000010076	-	95	45.072	Monodelphis_domestica
ENSXETG00000017960	ythdc1	54	67.204	ENSMALG00000013412	ythdc1	93	57.627	Monopterus_albus
ENSXETG00000017960	ythdc1	91	73.591	MGP_CAROLIEiJ_G0027347	Ythdc1	92	73.887	Mus_caroli
ENSXETG00000017960	ythdc1	91	73.855	ENSMUSG00000035851	Ythdc1	92	74.294	Mus_musculus
ENSXETG00000017960	ythdc1	91	73.412	MGP_PahariEiJ_G0017126	Ythdc1	92	73.848	Mus_pahari
ENSXETG00000017960	ythdc1	91	73.739	MGP_SPRETEiJ_G0028339	Ythdc1	92	73.997	Mus_spretus
ENSXETG00000017960	ythdc1	72	89.167	ENSMPUG00000001743	YTHDC1	71	90.576	Mustela_putorius_furo
ENSXETG00000017960	ythdc1	91	74.024	ENSMLUG00000016300	YTHDC1	92	74.024	Myotis_lucifugus
ENSXETG00000017960	ythdc1	58	63.146	ENSNGAG00000024000	Ythdc1	93	62.588	Nannospalax_galili
ENSXETG00000017960	ythdc1	57	64.662	ENSNBRG00000007663	ythdc1	91	55.254	Neolamprologus_brichardi
ENSXETG00000017960	ythdc1	91	71.576	ENSNLEG00000009202	YTHDC1	97	69.392	Nomascus_leucogenys
ENSXETG00000017960	ythdc1	71	76.254	ENSMEUG00000007128	YTHDC1	68	75.748	Notamacropus_eugenii
ENSXETG00000017960	ythdc1	71	92.053	ENSOPRG00000008986	YTHDC1	67	91.973	Ochotona_princeps
ENSXETG00000017960	ythdc1	91	73.842	ENSODEG00000001715	YTHDC1	92	74.290	Octodon_degus
ENSXETG00000017960	ythdc1	92	50.890	ENSONIG00000012651	ythdc1	90	67.391	Oreochromis_niloticus
ENSXETG00000017960	ythdc1	88	65.701	ENSOANG00000014398	YTHDC1	72	88.732	Ornithorhynchus_anatinus
ENSXETG00000017960	ythdc1	92	89.340	ENSOCUG00000015886	YTHDC1	76	89.717	Oryctolagus_cuniculus
ENSXETG00000017960	ythdc1	92	55.743	ENSORLG00000030544	ythdc1	94	58.473	Oryzias_latipes
ENSXETG00000017960	ythdc1	92	55.046	ENSORLG00020019316	ythdc1	94	57.663	Oryzias_latipes_hni
ENSXETG00000017960	ythdc1	92	55.778	ENSOMEG00000000551	ythdc1	94	57.846	Oryzias_melastigma
ENSXETG00000017960	ythdc1	91	73.214	ENSOGAG00000003362	YTHDC1	92	73.997	Otolemur_garnettii
ENSXETG00000017960	ythdc1	91	71.493	ENSOARG00000008633	YTHDC1	92	73.591	Ovis_aries
ENSXETG00000017960	ythdc1	91	72.504	ENSPPAG00000041315	YTHDC1	97	70.229	Pan_paniscus
ENSXETG00000017960	ythdc1	91	71.975	ENSPPRG00000011979	YTHDC1	92	72.366	Panthera_pardus
ENSXETG00000017960	ythdc1	91	71.736	ENSPTIG00000015527	YTHDC1	93	72.271	Panthera_tigris_altaica
ENSXETG00000017960	ythdc1	91	72.504	ENSPTRG00000016105	YTHDC1	97	70.229	Pan_troglodytes
ENSXETG00000017960	ythdc1	91	72.546	ENSPANG00000021590	YTHDC1	96	70.095	Papio_anubis
ENSXETG00000017960	ythdc1	93	64.845	ENSPKIG00000018497	ythdc1	93	65.583	Paramormyrops_kingsleyae
ENSXETG00000017960	ythdc1	91	77.196	ENSPSIG00000002782	YTHDC1	92	77.589	Pelodiscus_sinensis
ENSXETG00000017960	ythdc1	57	62.769	ENSPMGG00000000970	-	73	70.000	Periophthalmus_magnuspinnatus
ENSXETG00000017960	ythdc1	91	73.204	ENSPEMG00000013850	Ythdc1	92	73.842	Peromyscus_maniculatus_bairdii
ENSXETG00000017960	ythdc1	91	74.771	ENSPCIG00000006870	YTHDC1	91	76.524	Phascolarctos_cinereus
ENSXETG00000017960	ythdc1	57	64.692	ENSPFOG00000013404	ythdc1	94	57.099	Poecilia_formosa
ENSXETG00000017960	ythdc1	57	64.692	ENSPLAG00000011079	ythdc1	85	69.212	Poecilia_latipinna
ENSXETG00000017960	ythdc1	57	64.692	ENSPMEG00000009238	ythdc1	94	56.288	Poecilia_mexicana
ENSXETG00000017960	ythdc1	57	66.237	ENSPREG00000016973	ythdc1	93	54.016	Poecilia_reticulata
ENSXETG00000017960	ythdc1	62	89.336	ENSPPYG00000014726	YTHDC1	91	74.742	Pongo_abelii
ENSXETG00000017960	ythdc1	75	81.364	ENSPCAG00000009607	YTHDC1	76	81.364	Procavia_capensis
ENSXETG00000017960	ythdc1	91	71.362	ENSPCOG00000019105	YTHDC1	91	71.674	Propithecus_coquereli
ENSXETG00000017960	ythdc1	91	69.094	ENSPVAG00000015551	YTHDC1	92	69.912	Pteropus_vampyrus
ENSXETG00000017960	ythdc1	57	64.951	ENSPNYG00000011687	ythdc1	94	57.078	Pundamilia_nyererei
ENSXETG00000017960	ythdc1	91	67.863	ENSPNAG00000028365	ythdc1	91	67.913	Pygocentrus_nattereri
ENSXETG00000017960	ythdc1	91	70.485	ENSRNOG00000001996	Ythdc1	92	72.434	Rattus_norvegicus
ENSXETG00000017960	ythdc1	91	70.501	ENSRBIG00000028279	YTHDC1	97	68.691	Rhinopithecus_bieti
ENSXETG00000017960	ythdc1	91	72.546	ENSRROG00000035028	YTHDC1	97	70.019	Rhinopithecus_roxellana
ENSXETG00000017960	ythdc1	91	72.546	ENSSBOG00000022353	YTHDC1	97	70.019	Saimiri_boliviensis_boliviensis
ENSXETG00000017960	ythdc1	91	75.269	ENSSHAG00000002538	YTHDC1	91	77.029	Sarcophilus_harrisii
ENSXETG00000017960	ythdc1	91	66.613	ENSSFOG00015003298	ythdc1	92	65.496	Scleropages_formosus
ENSXETG00000017960	ythdc1	57	65.783	ENSSMAG00000009086	ythdc1	94	57.903	Scophthalmus_maximus
ENSXETG00000017960	ythdc1	57	66.502	ENSSDUG00000022008	ythdc1	94	57.658	Seriola_dumerili
ENSXETG00000017960	ythdc1	57	66.502	ENSSLDG00000007926	ythdc1	94	57.958	Seriola_lalandi_dorsalis
ENSXETG00000017960	ythdc1	67	78.740	ENSSARG00000010960	YTHDC1	78	84.802	Sorex_araneus
ENSXETG00000017960	ythdc1	93	75.680	ENSSPUG00000009357	YTHDC1	94	75.781	Sphenodon_punctatus
ENSXETG00000017960	ythdc1	57	66.912	ENSSPAG00000011449	ythdc1	94	58.859	Stegastes_partitus
ENSXETG00000017960	ythdc1	91	70.925	ENSSSCG00000035505	YTHDC1	92	72.076	Sus_scrofa
ENSXETG00000017960	ythdc1	92	76.408	ENSTGUG00000004452	-	92	76.336	Taeniopygia_guttata
ENSXETG00000017960	ythdc1	91	47.450	ENSTRUG00000010142	ythdc1	92	50.155	Takifugu_rubripes
ENSXETG00000017960	ythdc1	92	55.714	ENSTNIG00000013243	ythdc1	91	56.757	Tetraodon_nigroviridis
ENSXETG00000017960	ythdc1	91	69.231	ENSTBEG00000011546	YTHDC1	92	70.136	Tupaia_belangeri
ENSXETG00000017960	ythdc1	91	70.939	ENSTTRG00000005083	YTHDC1	92	72.849	Tursiops_truncatus
ENSXETG00000017960	ythdc1	85	70.984	ENSUAMG00000010388	YTHDC1	92	72.222	Ursus_americanus
ENSXETG00000017960	ythdc1	92	67.939	ENSUMAG00000013668	YTHDC1	91	68.252	Ursus_maritimus
ENSXETG00000017960	ythdc1	91	72.350	ENSVPAG00000009040	YTHDC1	92	72.350	Vicugna_pacos
ENSXETG00000017960	ythdc1	91	70.545	ENSVVUG00000005387	YTHDC1	92	71.746	Vulpes_vulpes
ENSXETG00000017960	ythdc1	57	63.981	ENSXMAG00000005196	ythdc1	94	55.061	Xiphophorus_maculatus