EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000019214 (Gene tree)
Gene ID: -
Gene Symbol: smarcad1
Alias: -
Full Name: SWI/SNF-related%2C matrix-associated actin-dependent regulator of chromatin%2C subfamily a%2C containing DEAD/H box 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 46743 bases
Position: chrGL172870.1:8072-54814
Accession: XB-GENE-492700
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000059821	ResIII	PF04851.15	8.5e-08	1	1
ENSXETP00000041632	ResIII	PF04851.15	9.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000065122	-	2634	-	ENSXETP00000059821	877 (aa)	-	L7N498
ENSXETT00000041632	-	2715	-	ENSXETP00000041632	904 (aa)	-	L7N496

Gene Model

Click here to download ENSXETG00000019214's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000019214's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000019214	smarcad1	59	33.028	ENSXETG00000017194	CHD8	52	34.074
ENSXETG00000019214	smarcad1	57	31.298	ENSXETG00000026410	chd4	53	31.749

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000019214	smarcad1	100	65.529	ENSG00000163104	SMARCAD1	100	73.244	Homo_sapiens
ENSXETG00000019214	smarcad1	95	59.286	ENSAPOG00000011446	smarcad1a	80	60.264	Acanthochromis_polyacanthus
ENSXETG00000019214	smarcad1	100	65.909	ENSAMEG00000005844	SMARCAD1	84	66.023	Ailuropoda_melanoleuca
ENSXETG00000019214	smarcad1	80	63.858	ENSACIG00000018326	smarcad1a	100	63.858	Amphilophus_citrinellus
ENSXETG00000019214	smarcad1	94	60.593	ENSAOCG00000019762	smarcad1a	79	60.534	Amphiprion_ocellaris
ENSXETG00000019214	smarcad1	96	60.682	ENSAPEG00000003889	smarcad1a	79	60.682	Amphiprion_percula
ENSXETG00000019214	smarcad1	94	59.019	ENSATEG00000015608	smarcad1a	93	58.798	Anabas_testudineus
ENSXETG00000019214	smarcad1	100	65.643	ENSAPLG00000004630	SMARCAD1	91	65.045	Anas_platyrhynchos
ENSXETG00000019214	smarcad1	100	64.196	ENSACAG00000013554	SMARCAD1	85	64.237	Anolis_carolinensis
ENSXETG00000019214	smarcad1	100	65.529	ENSANAG00000020488	SMARCAD1	95	65.643	Aotus_nancymaae
ENSXETG00000019214	smarcad1	94	59.222	ENSACLG00000017063	smarcad1a	89	57.163	Astatotilapia_calliptera
ENSXETG00000019214	smarcad1	82	55.447	ENSAMXG00000015470	smarcad1a	94	58.247	Astyanax_mexicanus
ENSXETG00000019214	smarcad1	89	53.972	ENSAMXG00000019130	smarcad1b	84	54.477	Astyanax_mexicanus
ENSXETG00000019214	smarcad1	100	65.834	ENSBTAG00000017061	SMARCAD1	84	65.834	Bos_taurus
ENSXETG00000019214	smarcad1	74	38.450	WBGene00010845	M03C11.8	74	36.521	Caenorhabditis_elegans
ENSXETG00000019214	smarcad1	100	65.643	ENSCJAG00000006778	SMARCAD1	84	65.757	Callithrix_jacchus
ENSXETG00000019214	smarcad1	100	65.909	ENSCAFG00000010026	SMARCAD1	84	66.023	Canis_familiaris
ENSXETG00000019214	smarcad1	100	65.984	ENSCAFG00020003994	SMARCAD1	97	66.098	Canis_lupus_dingo
ENSXETG00000019214	smarcad1	100	65.682	ENSCHIG00000012905	SMARCAD1	84	65.682	Capra_hircus
ENSXETG00000019214	smarcad1	100	65.415	ENSTSYG00000002706	SMARCAD1	84	65.529	Carlito_syrichta
ENSXETG00000019214	smarcad1	95	56.611	ENSCAPG00000016744	SMARCAD1	89	57.332	Cavia_aperea
ENSXETG00000019214	smarcad1	100	65.870	ENSCPOG00000011398	SMARCAD1	84	65.870	Cavia_porcellus
ENSXETG00000019214	smarcad1	100	65.643	ENSCCAG00000022264	SMARCAD1	100	73.244	Cebus_capucinus
ENSXETG00000019214	smarcad1	100	65.643	ENSCATG00000035663	SMARCAD1	97	65.757	Cercocebus_atys
ENSXETG00000019214	smarcad1	97	65.574	ENSCSAG00000004186	SMARCAD1	100	65.691	Chlorocebus_sabaeus
ENSXETG00000019214	smarcad1	100	67.845	ENSCPBG00000013203	SMARCAD1	84	67.849	Chrysemys_picta_bellii
ENSXETG00000019214	smarcad1	75	48.286	ENSCING00000001688	-	99	48.286	Ciona_intestinalis
ENSXETG00000019214	smarcad1	100	65.643	ENSCANG00000003556	SMARCAD1	100	73.244	Colobus_angolensis_palliatus
ENSXETG00000019214	smarcad1	100	65.336	ENSCGRG00001015056	Smarcad1	84	65.450	Cricetulus_griseus_chok1gshd
ENSXETG00000019214	smarcad1	100	65.336	ENSCGRG00000014087	Smarcad1	84	65.450	Cricetulus_griseus_crigri
ENSXETG00000019214	smarcad1	97	57.410	ENSCSEG00000014419	-	95	48.099	Cynoglossus_semilaevis
ENSXETG00000019214	smarcad1	94	57.266	ENSCSEG00000017903	smarcad1a	83	55.495	Cynoglossus_semilaevis
ENSXETG00000019214	smarcad1	99	50.609	ENSDARG00000014041	smarcad1a	95	50.106	Danio_rerio
ENSXETG00000019214	smarcad1	92	54.321	ENSDARG00000073721	smarcad1b	84	54.233	Danio_rerio
ENSXETG00000019214	smarcad1	100	65.643	ENSDNOG00000000806	-	84	65.757	Dasypus_novemcinctus
ENSXETG00000019214	smarcad1	100	65.011	ENSDORG00000012331	Smarcad1	84	65.124	Dipodomys_ordii
ENSXETG00000019214	smarcad1	73	43.598	FBgn0032157	Etl1	87	40.572	Drosophila_melanogaster
ENSXETG00000019214	smarcad1	74	45.413	ENSEBUG00000003969	smarcad1a	96	45.894	Eptatretus_burgeri
ENSXETG00000019214	smarcad1	100	65.909	ENSEASG00005012382	SMARCAD1	84	66.023	Equus_asinus_asinus
ENSXETG00000019214	smarcad1	100	65.909	ENSECAG00000011562	SMARCAD1	84	66.023	Equus_caballus
ENSXETG00000019214	smarcad1	94	51.745	ENSELUG00000019154	smarcad1b	83	51.625	Esox_lucius
ENSXETG00000019214	smarcad1	100	51.908	ENSELUG00000018535	smarcad1a	89	52.236	Esox_lucius
ENSXETG00000019214	smarcad1	100	66.098	ENSFCAG00000003958	SMARCAD1	100	73.746	Felis_catus
ENSXETG00000019214	smarcad1	100	64.994	ENSFALG00000006089	SMARCAD1	85	64.140	Ficedula_albicollis
ENSXETG00000019214	smarcad1	100	65.643	ENSFDAG00000017027	SMARCAD1	84	65.757	Fukomys_damarensis
ENSXETG00000019214	smarcad1	100	59.556	ENSFHEG00000012778	smarcad1a	89	59.852	Fundulus_heteroclitus
ENSXETG00000019214	smarcad1	99	53.129	ENSGMOG00000018995	smarcad1a	97	52.787	Gadus_morhua
ENSXETG00000019214	smarcad1	89	66.881	ENSGALG00000037339	SMARCAD1	93	66.881	Gallus_gallus
ENSXETG00000019214	smarcad1	98	61.732	ENSGAFG00000013498	smarcad1a	63	59.820	Gambusia_affinis
ENSXETG00000019214	smarcad1	99	52.655	ENSGACG00000007327	smarcad1a	97	52.661	Gasterosteus_aculeatus
ENSXETG00000019214	smarcad1	100	66.933	ENSGAGG00000008582	SMARCAD1	84	67.162	Gopherus_agassizii
ENSXETG00000019214	smarcad1	100	65.643	ENSGGOG00000023001	SMARCAD1	84	65.757	Gorilla_gorilla
ENSXETG00000019214	smarcad1	94	59.222	ENSHBUG00000011042	smarcad1a	89	57.163	Haplochromis_burtoni
ENSXETG00000019214	smarcad1	100	65.643	ENSHGLG00000005070	SMARCAD1	84	65.757	Heterocephalus_glaber_female
ENSXETG00000019214	smarcad1	100	65.643	ENSHGLG00100006812	SMARCAD1	84	65.757	Heterocephalus_glaber_male
ENSXETG00000019214	smarcad1	73	60.031	ENSHCOG00000007848	smarcad1a	60	59.398	Hippocampus_comes
ENSXETG00000019214	smarcad1	100	47.858	ENSIPUG00000000242	smarcad1a	95	48.589	Ictalurus_punctatus
ENSXETG00000019214	smarcad1	89	55.371	ENSIPUG00000022817	smarcad1b	83	55.013	Ictalurus_punctatus
ENSXETG00000019214	smarcad1	100	65.529	ENSSTOG00000001227	SMARCAD1	84	65.643	Ictidomys_tridecemlineatus
ENSXETG00000019214	smarcad1	100	65.415	ENSJJAG00000022342	Smarcad1	84	65.529	Jaculus_jaculus
ENSXETG00000019214	smarcad1	90	59.125	ENSKMAG00000021351	smarcad1a	77	58.580	Kryptolebias_marmoratus
ENSXETG00000019214	smarcad1	94	59.856	ENSLBEG00000008088	smarcad1a	84	58.207	Labrus_bergylta
ENSXETG00000019214	smarcad1	100	56.404	ENSLOCG00000012909	smarcad1a	89	56.808	Lepisosteus_oculatus
ENSXETG00000019214	smarcad1	100	64.050	ENSLAFG00000000040	SMARCAD1	84	64.164	Loxodonta_africana
ENSXETG00000019214	smarcad1	100	65.757	ENSMFAG00000042606	SMARCAD1	97	65.870	Macaca_fascicularis
ENSXETG00000019214	smarcad1	100	65.757	ENSMMUG00000022242	SMARCAD1	97	65.870	Macaca_mulatta
ENSXETG00000019214	smarcad1	100	65.757	ENSMNEG00000038117	SMARCAD1	100	73.244	Macaca_nemestrina
ENSXETG00000019214	smarcad1	100	65.643	ENSMLEG00000038333	SMARCAD1	100	73.244	Mandrillus_leucophaeus
ENSXETG00000019214	smarcad1	100	59.637	ENSMAMG00000000933	smarcad1a	89	51.528	Mastacembelus_armatus
ENSXETG00000019214	smarcad1	100	51.025	ENSMZEG00005005203	smarcad1a	90	51.233	Maylandia_zebra
ENSXETG00000019214	smarcad1	100	58.539	ENSMGAG00000005577	SMARCAD1	90	58.539	Meleagris_gallopavo
ENSXETG00000019214	smarcad1	100	65.222	ENSMAUG00000008417	Smarcad1	84	65.336	Mesocricetus_auratus
ENSXETG00000019214	smarcad1	100	65.494	ENSMICG00000009746	SMARCAD1	84	65.607	Microcebus_murinus
ENSXETG00000019214	smarcad1	100	65.341	ENSMOCG00000017142	Smarcad1	84	65.455	Microtus_ochrogaster
ENSXETG00000019214	smarcad1	78	59.914	ENSMMOG00000000275	smarcad1a	93	59.704	Mola_mola
ENSXETG00000019214	smarcad1	100	66.021	ENSMODG00000019268	SMARCAD1	87	63.877	Monodelphis_domestica
ENSXETG00000019214	smarcad1	98	65.541	MGP_CAROLIEiJ_G0028458	-	67	65.541	Mus_caroli
ENSXETG00000019214	smarcad1	100	65.262	ENSMUSG00000029920	Smarcad1	88	62.324	Mus_musculus
ENSXETG00000019214	smarcad1	100	65.450	MGP_PahariEiJ_G0022198	Smarcad1	84	65.450	Mus_pahari
ENSXETG00000019214	smarcad1	100	65.336	MGP_SPRETEiJ_G0029462	Smarcad1	84	65.336	Mus_spretus
ENSXETG00000019214	smarcad1	100	65.795	ENSMPUG00000002111	SMARCAD1	84	65.909	Mustela_putorius_furo
ENSXETG00000019214	smarcad1	100	66.364	ENSMLUG00000000425	SMARCAD1	84	66.477	Myotis_lucifugus
ENSXETG00000019214	smarcad1	100	64.994	ENSNGAG00000000810	Smarcad1	88	63.274	Nannospalax_galili
ENSXETG00000019214	smarcad1	76	58.493	ENSNBRG00000012749	smarcad1a	87	54.993	Neolamprologus_brichardi
ENSXETG00000019214	smarcad1	100	65.643	ENSNLEG00000014225	SMARCAD1	100	73.244	Nomascus_leucogenys
ENSXETG00000019214	smarcad1	100	65.870	ENSODEG00000004334	SMARCAD1	88	63.428	Octodon_degus
ENSXETG00000019214	smarcad1	100	53.386	ENSONIG00000015059	smarcad1a	89	54.063	Oreochromis_niloticus
ENSXETG00000019214	smarcad1	95	68.503	ENSOANG00000013764	SMARCAD1	99	68.862	Ornithorhynchus_anatinus
ENSXETG00000019214	smarcad1	100	65.529	ENSOCUG00000017283	SMARCAD1	84	65.643	Oryctolagus_cuniculus
ENSXETG00000019214	smarcad1	100	54.141	ENSORLG00000004869	smarcad1a	90	54.047	Oryzias_latipes
ENSXETG00000019214	smarcad1	100	54.141	ENSORLG00020020569	smarcad1a	90	53.923	Oryzias_latipes_hni
ENSXETG00000019214	smarcad1	96	58.123	ENSORLG00015009045	smarcad1a	90	54.047	Oryzias_latipes_hsok
ENSXETG00000019214	smarcad1	100	60.968	ENSOMEG00000023032	smarcad1a	79	60.118	Oryzias_melastigma
ENSXETG00000019214	smarcad1	100	64.886	ENSOGAG00000011444	SMARCAD1	84	65.000	Otolemur_garnettii
ENSXETG00000019214	smarcad1	100	65.682	ENSOARG00000017851	SMARCAD1	84	65.682	Ovis_aries
ENSXETG00000019214	smarcad1	100	65.643	ENSPPAG00000035715	SMARCAD1	84	65.757	Pan_paniscus
ENSXETG00000019214	smarcad1	100	66.098	ENSPPRG00000024756	SMARCAD1	100	73.746	Panthera_pardus
ENSXETG00000019214	smarcad1	100	66.061	ENSPTIG00000017868	SMARCAD1	84	66.175	Panthera_tigris_altaica
ENSXETG00000019214	smarcad1	100	65.643	ENSPTRG00000023126	SMARCAD1	100	73.244	Pan_troglodytes
ENSXETG00000019214	smarcad1	100	64.512	ENSPANG00000019757	SMARCAD1	84	64.512	Papio_anubis
ENSXETG00000019214	smarcad1	100	66.363	ENSPSIG00000010255	SMARCAD1	83	66.363	Pelodiscus_sinensis
ENSXETG00000019214	smarcad1	73	61.550	ENSPMGG00000010735	smarcad1a	96	59.534	Periophthalmus_magnuspinnatus
ENSXETG00000019214	smarcad1	100	60.661	ENSPEMG00000001854	Smarcad1	86	61.379	Peromyscus_maniculatus_bairdii
ENSXETG00000019214	smarcad1	99	49.380	ENSPMAG00000003516	smarcad1a	89	48.116	Petromyzon_marinus
ENSXETG00000019214	smarcad1	89	70.000	ENSPCIG00000008137	SMARCAD1	98	70.532	Phascolarctos_cinereus
ENSXETG00000019214	smarcad1	99	59.909	ENSPFOG00000019116	smarcad1a	82	56.456	Poecilia_formosa
ENSXETG00000019214	smarcad1	99	59.909	ENSPLAG00000000108	smarcad1a	79	58.345	Poecilia_latipinna
ENSXETG00000019214	smarcad1	99	59.909	ENSPMEG00000009155	smarcad1a	79	58.345	Poecilia_mexicana
ENSXETG00000019214	smarcad1	100	58.069	ENSPREG00000018185	smarcad1a	89	55.972	Poecilia_reticulata
ENSXETG00000019214	smarcad1	100	65.494	ENSPPYG00000014935	SMARCAD1	84	65.607	Pongo_abelii
ENSXETG00000019214	smarcad1	83	60.383	ENSPCOG00000020478	SMARCAD1	81	60.383	Propithecus_coquereli
ENSXETG00000019214	smarcad1	100	65.306	ENSPVAG00000001760	SMARCAD1	84	65.420	Pteropus_vampyrus
ENSXETG00000019214	smarcad1	76	58.346	ENSPNYG00000010087	smarcad1a	85	56.276	Pundamilia_nyererei
ENSXETG00000019214	smarcad1	100	51.171	ENSPNAG00000001663	smarcad1a	95	49.893	Pygocentrus_nattereri
ENSXETG00000019214	smarcad1	89	55.429	ENSPNAG00000010099	smarcad1b	83	55.457	Pygocentrus_nattereri
ENSXETG00000019214	smarcad1	100	65.336	ENSRNOG00000006391	Smarcad1	84	65.336	Rattus_norvegicus
ENSXETG00000019214	smarcad1	100	65.643	ENSRBIG00000041989	SMARCAD1	84	65.757	Rhinopithecus_bieti
ENSXETG00000019214	smarcad1	100	65.643	ENSRROG00000035309	SMARCAD1	84	65.757	Rhinopithecus_roxellana
ENSXETG00000019214	smarcad1	100	65.643	ENSSBOG00000032114	SMARCAD1	100	73.244	Saimiri_boliviensis_boliviensis
ENSXETG00000019214	smarcad1	100	66.135	ENSSHAG00000001279	SMARCAD1	87	63.987	Sarcophilus_harrisii
ENSXETG00000019214	smarcad1	87	52.911	ENSSFOG00015020909	smarcad1a	100	53.342	Scleropages_formosus
ENSXETG00000019214	smarcad1	100	51.864	ENSSFOG00015016814	smarcad1b	89	51.641	Scleropages_formosus
ENSXETG00000019214	smarcad1	100	60.832	ENSSMAG00000001326	smarcad1a	90	58.687	Scophthalmus_maximus
ENSXETG00000019214	smarcad1	78	59.971	ENSSDUG00000022338	smarcad1a	82	60.058	Seriola_dumerili
ENSXETG00000019214	smarcad1	94	59.541	ENSSLDG00000024986	smarcad1a	79	59.797	Seriola_lalandi_dorsalis
ENSXETG00000019214	smarcad1	68	74.247	ENSSPUG00000004633	SMARCAD1	100	74.372	Sphenodon_punctatus
ENSXETG00000019214	smarcad1	92	61.333	ENSSPAG00000001970	smarcad1a	80	61.333	Stegastes_partitus
ENSXETG00000019214	smarcad1	100	65.909	ENSSSCG00000009193	SMARCAD1	100	65.965	Sus_scrofa
ENSXETG00000019214	smarcad1	89	68.926	ENSTGUG00000003127	SMARCAD1	99	68.414	Taeniopygia_guttata
ENSXETG00000019214	smarcad1	100	52.483	ENSTNIG00000017585	smarcad1a	99	51.964	Tetraodon_nigroviridis
ENSXETG00000019214	smarcad1	89	73.861	ENSTBEG00000002789	SMARCAD1	75	73.861	Tupaia_belangeri
ENSXETG00000019214	smarcad1	100	66.250	ENSTTRG00000000226	SMARCAD1	86	66.364	Tursiops_truncatus
ENSXETG00000019214	smarcad1	100	65.909	ENSUAMG00000022262	SMARCAD1	84	66.023	Ursus_americanus
ENSXETG00000019214	smarcad1	100	65.984	ENSUMAG00000004549	SMARCAD1	84	66.098	Ursus_maritimus
ENSXETG00000019214	smarcad1	100	65.795	ENSVVUG00000007271	SMARCAD1	100	65.848	Vulpes_vulpes
ENSXETG00000019214	smarcad1	87	53.595	ENSXCOG00000005232	smarcad1a	84	57.353	Xiphophorus_couchianus
ENSXETG00000019214	smarcad1	100	57.887	ENSXMAG00000015350	smarcad1a	78	58.272	Xiphophorus_maculatus