EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000019330 (Gene tree)
Gene ID: -
Gene Symbol: r3hdm1
Alias: -
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 35961 bases
Position: chrGL172713.1:3005223-3041183
Accession: XB-GENE-984253
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000041886	R3H	PF01424.22	3.6e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000041886	-	2925	-	ENSXETP00000041886	975 (aa)	-	F6UF17

Gene Model

Click here to download ENSXETG00000019330's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000019330's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000019330	r3hdm1	96	49.351	ENSXETG00000017153	r3hdm2	83	53.483

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000019330	r3hdm1	100	67.472	ENSG00000048991	R3HDM1	87	89.041	Homo_sapiens
ENSXETG00000019330	r3hdm1	100	67.505	ENSAMEG00000014886	R3HDM1	89	67.706	Ailuropoda_melanoleuca
ENSXETG00000019330	r3hdm1	99	43.293	ENSAOCG00000005192	r3hdm1	99	41.551	Amphiprion_ocellaris
ENSXETG00000019330	r3hdm1	88	46.702	ENSAPEG00000016108	r3hdm1	94	45.636	Amphiprion_percula
ENSXETG00000019330	r3hdm1	87	46.344	ENSATEG00000000232	r3hdm1	93	45.474	Anabas_testudineus
ENSXETG00000019330	r3hdm1	100	69.919	ENSAPLG00000015231	R3HDM1	89	70.020	Anas_platyrhynchos
ENSXETG00000019330	r3hdm1	100	66.146	ENSACAG00000001676	R3HDM1	90	66.244	Anolis_carolinensis
ENSXETG00000019330	r3hdm1	100	67.404	ENSANAG00000035334	R3HDM1	90	67.606	Aotus_nancymaae
ENSXETG00000019330	r3hdm1	87	46.919	ENSACLG00000027282	r3hdm1	94	46.336	Astatotilapia_calliptera
ENSXETG00000019330	r3hdm1	75	38.151	ENSAMXG00000020587	arpp21	82	39.042	Astyanax_mexicanus
ENSXETG00000019330	r3hdm1	99	52.521	ENSAMXG00000003536	r3hdm1	90	53.366	Astyanax_mexicanus
ENSXETG00000019330	r3hdm1	100	60.000	ENSAMXG00000012861	R3HDM1	90	60.119	Astyanax_mexicanus
ENSXETG00000019330	r3hdm1	100	65.455	ENSBTAG00000013302	R3HDM1	90	65.918	Bos_taurus
ENSXETG00000019330	r3hdm1	100	67.339	ENSCJAG00000011718	R3HDM1	90	67.540	Callithrix_jacchus
ENSXETG00000019330	r3hdm1	100	67.706	ENSCAFG00000005075	R3HDM1	89	67.907	Canis_familiaris
ENSXETG00000019330	r3hdm1	100	67.706	ENSCAFG00020016119	R3HDM1	94	72.658	Canis_lupus_dingo
ENSXETG00000019330	r3hdm1	100	67.915	ENSCHIG00000020851	R3HDM1	89	68.219	Capra_hircus
ENSXETG00000019330	r3hdm1	100	63.046	ENSCPOG00000012784	R3HDM1	88	80.760	Cavia_porcellus
ENSXETG00000019330	r3hdm1	100	66.969	ENSCCAG00000027199	R3HDM1	90	67.170	Cebus_capucinus
ENSXETG00000019330	r3hdm1	99	73.269	ENSCATG00000023642	R3HDM1	90	67.472	Cercocebus_atys
ENSXETG00000019330	r3hdm1	100	64.591	ENSCLAG00000007962	R3HDM1	86	82.898	Chinchilla_lanigera
ENSXETG00000019330	r3hdm1	100	65.078	ENSCSAG00000016356	R3HDM1	90	65.433	Chlorocebus_sabaeus
ENSXETG00000019330	r3hdm1	75	76.336	ENSCHOG00000013638	R3HDM1	70	76.336	Choloepus_hoffmanni
ENSXETG00000019330	r3hdm1	77	88.971	ENSCPBG00000009645	R3HDM1	88	75.621	Chrysemys_picta_bellii
ENSXETG00000019330	r3hdm1	100	67.304	ENSCANG00000034748	R3HDM1	90	67.505	Colobus_angolensis_palliatus
ENSXETG00000019330	r3hdm1	100	64.113	ENSCGRG00001012357	R3hdm1	87	64.202	Cricetulus_griseus_chok1gshd
ENSXETG00000019330	r3hdm1	100	66.566	ENSCGRG00000012080	R3hdm1	86	82.423	Cricetulus_griseus_crigri
ENSXETG00000019330	r3hdm1	91	42.111	ENSCSEG00000008944	r3hdm1	94	41.341	Cynoglossus_semilaevis
ENSXETG00000019330	r3hdm1	99	44.455	ENSCVAG00000007582	r3hdm1	99	44.273	Cyprinodon_variegatus
ENSXETG00000019330	r3hdm1	60	35.135	ENSDARG00000061081	arpp21	82	37.702	Danio_rerio
ENSXETG00000019330	r3hdm1	100	65.226	ENSDNOG00000000771	R3HDM1	89	65.528	Dasypus_novemcinctus
ENSXETG00000019330	r3hdm1	100	60.526	ENSETEG00000013606	R3HDM1	89	60.729	Echinops_telfairi
ENSXETG00000019330	r3hdm1	74	39.495	ENSEBUG00000014746	arpp21	97	42.212	Eptatretus_burgeri
ENSXETG00000019330	r3hdm1	100	67.475	ENSEASG00005007392	R3HDM1	89	67.778	Equus_asinus_asinus
ENSXETG00000019330	r3hdm1	100	67.540	ENSECAG00000019114	R3HDM1	89	67.742	Equus_caballus
ENSXETG00000019330	r3hdm1	89	66.348	ENSEEUG00000012589	R3HDM1	68	66.219	Erinaceus_europaeus
ENSXETG00000019330	r3hdm1	99	55.981	ENSELUG00000004909	R3HDM1	90	56.298	Esox_lucius
ENSXETG00000019330	r3hdm1	92	50.886	ENSELUG00000014413	r3hdm1	83	53.238	Esox_lucius
ENSXETG00000019330	r3hdm1	100	67.677	ENSFCAG00000027113	R3HDM1	89	67.980	Felis_catus
ENSXETG00000019330	r3hdm1	99	64.982	ENSFALG00000013731	R3HDM1	91	60.817	Ficedula_albicollis
ENSXETG00000019330	r3hdm1	100	64.597	ENSFDAG00000016478	R3HDM1	86	82.185	Fukomys_damarensis
ENSXETG00000019330	r3hdm1	99	42.711	ENSFHEG00000018713	r3hdm1	100	42.389	Fundulus_heteroclitus
ENSXETG00000019330	r3hdm1	66	60.649	ENSGMOG00000006042	-	79	58.052	Gadus_morhua
ENSXETG00000019330	r3hdm1	81	81.046	ENSGALG00000012246	R3HDM1	87	81.250	Gallus_gallus
ENSXETG00000019330	r3hdm1	90	46.032	ENSGAFG00000006203	r3hdm1	94	45.659	Gambusia_affinis
ENSXETG00000019330	r3hdm1	92	43.948	ENSGACG00000014925	r3hdm1	92	45.473	Gasterosteus_aculeatus
ENSXETG00000019330	r3hdm1	100	70.000	ENSGAGG00000007840	R3HDM1	89	69.898	Gopherus_agassizii
ENSXETG00000019330	r3hdm1	100	67.372	ENSGGOG00000008156	R3HDM1	100	67.152	Gorilla_gorilla
ENSXETG00000019330	r3hdm1	100	64.460	ENSHGLG00000015718	R3HDM1	86	82.423	Heterocephalus_glaber_female
ENSXETG00000019330	r3hdm1	87	58.817	ENSHGLG00100015374	-	85	58.960	Heterocephalus_glaber_male
ENSXETG00000019330	r3hdm1	100	64.362	ENSHGLG00100003184	-	86	82.423	Heterocephalus_glaber_male
ENSXETG00000019330	r3hdm1	87	42.591	ENSHCOG00000013366	r3hdm1	87	58.911	Hippocampus_comes
ENSXETG00000019330	r3hdm1	82	66.462	ENSIPUG00000013629	r3hdm1	83	68.269	Ictalurus_punctatus
ENSXETG00000019330	r3hdm1	99	55.865	ENSIPUG00000001676	R3HDM1	99	54.771	Ictalurus_punctatus
ENSXETG00000019330	r3hdm1	100	67.404	ENSSTOG00000007572	R3HDM1	86	82.423	Ictidomys_tridecemlineatus
ENSXETG00000019330	r3hdm1	92	66.632	ENSLACG00000005334	R3HDM1	87	66.910	Latimeria_chalumnae
ENSXETG00000019330	r3hdm1	100	63.100	ENSLOCG00000001641	r3hdm1	90	62.900	Lepisosteus_oculatus
ENSXETG00000019330	r3hdm1	100	64.981	ENSLAFG00000009065	R3HDM1	90	65.692	Loxodonta_africana
ENSXETG00000019330	r3hdm1	100	67.472	ENSMFAG00000030331	R3HDM1	90	67.674	Macaca_fascicularis
ENSXETG00000019330	r3hdm1	100	67.372	ENSMMUG00000009844	R3HDM1	90	67.573	Macaca_mulatta
ENSXETG00000019330	r3hdm1	100	67.372	ENSMNEG00000027793	R3HDM1	90	67.573	Macaca_nemestrina
ENSXETG00000019330	r3hdm1	100	67.472	ENSMLEG00000043189	R3HDM1	90	67.674	Mandrillus_leucophaeus
ENSXETG00000019330	r3hdm1	99	44.765	ENSMAMG00000004532	r3hdm1	87	60.628	Mastacembelus_armatus
ENSXETG00000019330	r3hdm1	91	45.890	ENSMZEG00005003157	r3hdm1	94	44.136	Maylandia_zebra
ENSXETG00000019330	r3hdm1	100	70.133	ENSMGAG00000012461	R3HDM1	89	70.234	Meleagris_gallopavo
ENSXETG00000019330	r3hdm1	100	63.830	ENSMAUG00000010315	R3hdm1	86	81.710	Mesocricetus_auratus
ENSXETG00000019330	r3hdm1	100	66.066	ENSMICG00000005900	-	89	66.165	Microcebus_murinus
ENSXETG00000019330	r3hdm1	54	71.702	ENSMOCG00000019833	-	86	80.998	Microtus_ochrogaster
ENSXETG00000019330	r3hdm1	99	64.340	ENSMODG00000000923	R3HDM1	96	65.514	Monodelphis_domestica
ENSXETG00000019330	r3hdm1	99	43.870	ENSMALG00000009000	r3hdm1	90	43.074	Monopterus_albus
ENSXETG00000019330	r3hdm1	100	64.043	MGP_CAROLIEiJ_G0014543	R3hdm1	100	67.774	Mus_caroli
ENSXETG00000019330	r3hdm1	100	63.654	ENSMUSG00000056211	R3hdm1	100	67.774	Mus_musculus
ENSXETG00000019330	r3hdm1	100	63.751	MGP_PahariEiJ_G0027779	R3hdm1	100	67.442	Mus_pahari
ENSXETG00000019330	r3hdm1	100	63.654	MGP_SPRETEiJ_G0015350	R3hdm1	100	67.774	Mus_spretus
ENSXETG00000019330	r3hdm1	100	67.137	ENSMPUG00000002412	R3HDM1	89	67.339	Mustela_putorius_furo
ENSXETG00000019330	r3hdm1	100	67.001	ENSMLUG00000013824	R3HDM1	90	66.901	Myotis_lucifugus
ENSXETG00000019330	r3hdm1	100	67.271	ENSNLEG00000008622	R3HDM1	90	67.472	Nomascus_leucogenys
ENSXETG00000019330	r3hdm1	99	59.631	ENSMEUG00000011784	R3HDM1	93	66.379	Notamacropus_eugenii
ENSXETG00000019330	r3hdm1	100	63.071	ENSODEG00000008607	R3HDM1	86	81.948	Octodon_degus
ENSXETG00000019330	r3hdm1	92	45.483	ENSONIG00000012017	r3hdm1	85	45.784	Oreochromis_niloticus
ENSXETG00000019330	r3hdm1	100	68.256	ENSOANG00000007987	R3HDM1	89	68.357	Ornithorhynchus_anatinus
ENSXETG00000019330	r3hdm1	99	67.105	ENSOCUG00000017366	R3HDM1	98	67.308	Oryctolagus_cuniculus
ENSXETG00000019330	r3hdm1	87	45.815	ENSORLG00000004297	r3hdm1	93	45.485	Oryzias_latipes
ENSXETG00000019330	r3hdm1	99	43.500	ENSORLG00015017355	r3hdm1	99	43.500	Oryzias_latipes_hsok
ENSXETG00000019330	r3hdm1	100	67.003	ENSOGAG00000003136	R3HDM1	89	67.003	Otolemur_garnettii
ENSXETG00000019330	r3hdm1	100	67.984	ENSOARG00000010788	R3HDM1	89	68.288	Ovis_aries
ENSXETG00000019330	r3hdm1	100	67.337	ENSPPAG00000027858	R3HDM1	90	67.337	Pan_paniscus
ENSXETG00000019330	r3hdm1	100	67.475	ENSPPRG00000002626	R3HDM1	89	67.778	Panthera_pardus
ENSXETG00000019330	r3hdm1	100	67.475	ENSPTIG00000016581	R3HDM1	89	67.778	Panthera_tigris_altaica
ENSXETG00000019330	r3hdm1	100	67.337	ENSPTRG00000012494	R3HDM1	90	67.337	Pan_troglodytes
ENSXETG00000019330	r3hdm1	100	67.372	ENSPANG00000026448	R3HDM1	90	67.573	Papio_anubis
ENSXETG00000019330	r3hdm1	56	55.009	ENSPKIG00000011224	R3HDM1	90	61.369	Paramormyrops_kingsleyae
ENSXETG00000019330	r3hdm1	85	67.877	ENSPKIG00000004328	r3hdm1	83	69.429	Paramormyrops_kingsleyae
ENSXETG00000019330	r3hdm1	100	69.857	ENSPSIG00000012915	R3HDM1	89	69.756	Pelodiscus_sinensis
ENSXETG00000019330	r3hdm1	100	63.654	ENSPEMG00000015187	R3hdm1	86	81.235	Peromyscus_maniculatus_bairdii
ENSXETG00000019330	r3hdm1	93	42.030	ENSPMAG00000003369	-	95	42.004	Petromyzon_marinus
ENSXETG00000019330	r3hdm1	100	69.332	ENSPCIG00000002491	R3HDM1	89	69.534	Phascolarctos_cinereus
ENSXETG00000019330	r3hdm1	99	42.764	ENSPFOG00000015036	r3hdm1	99	42.052	Poecilia_formosa
ENSXETG00000019330	r3hdm1	89	46.802	ENSPLAG00000018042	r3hdm1	95	46.072	Poecilia_latipinna
ENSXETG00000019330	r3hdm1	89	46.989	ENSPMEG00000023947	r3hdm1	95	46.253	Poecilia_mexicana
ENSXETG00000019330	r3hdm1	99	44.712	ENSPREG00000007902	r3hdm1	89	61.416	Poecilia_reticulata
ENSXETG00000019330	r3hdm1	100	66.700	ENSPPYG00000012815	R3HDM1	90	66.901	Pongo_abelii
ENSXETG00000019330	r3hdm1	100	56.680	ENSPCAG00000006208	R3HDM1	83	64.557	Procavia_capensis
ENSXETG00000019330	r3hdm1	77	87.454	ENSPCOG00000012698	R3HDM1	83	71.096	Propithecus_coquereli
ENSXETG00000019330	r3hdm1	100	59.759	ENSPVAG00000006098	R3HDM1	89	59.960	Pteropus_vampyrus
ENSXETG00000019330	r3hdm1	96	53.791	ENSPNAG00000013952	r3hdm1	90	53.379	Pygocentrus_nattereri
ENSXETG00000019330	r3hdm1	81	74.441	ENSPNAG00000005436	R3HDM1	88	74.598	Pygocentrus_nattereri
ENSXETG00000019330	r3hdm1	100	63.751	ENSRNOG00000004099	R3hdm1	90	63.743	Rattus_norvegicus
ENSXETG00000019330	r3hdm1	100	66.231	ENSRBIG00000033317	R3HDM1	88	71.279	Rhinopithecus_bieti
ENSXETG00000019330	r3hdm1	100	67.372	ENSRROG00000034534	R3HDM1	90	67.304	Rhinopithecus_roxellana
ENSXETG00000019330	r3hdm1	100	67.271	ENSSBOG00000020389	R3HDM1	90	67.472	Saimiri_boliviensis_boliviensis
ENSXETG00000019330	r3hdm1	100	69.583	ENSSHAG00000016999	R3HDM1	89	69.685	Sarcophilus_harrisii
ENSXETG00000019330	r3hdm1	100	58.635	ENSSFOG00015014134	r3hdm1	89	66.180	Scleropages_formosus
ENSXETG00000019330	r3hdm1	99	55.135	ENSSFOG00015019851	-	95	53.568	Scleropages_formosus
ENSXETG00000019330	r3hdm1	99	43.425	ENSSMAG00000001669	r3hdm1	90	42.697	Scophthalmus_maximus
ENSXETG00000019330	r3hdm1	91	45.343	ENSSDUG00000010749	r3hdm1	99	43.165	Seriola_dumerili
ENSXETG00000019330	r3hdm1	92	45.885	ENSSLDG00000004499	r3hdm1	90	43.503	Seriola_lalandi_dorsalis
ENSXETG00000019330	r3hdm1	60	59.091	ENSSARG00000000352	-	53	59.091	Sorex_araneus
ENSXETG00000019330	r3hdm1	100	69.959	ENSSPUG00000004167	R3HDM1	89	69.857	Sphenodon_punctatus
ENSXETG00000019330	r3hdm1	99	45.524	ENSSPAG00000004648	r3hdm1	99	44.413	Stegastes_partitus
ENSXETG00000019330	r3hdm1	100	67.843	ENSSSCG00000015692	R3HDM1	89	68.044	Sus_scrofa
ENSXETG00000019330	r3hdm1	100	66.362	ENSTGUG00000011750	R3HDM1	90	66.159	Taeniopygia_guttata
ENSXETG00000019330	r3hdm1	87	45.230	ENSTRUG00000011654	r3hdm1	92	43.717	Takifugu_rubripes
ENSXETG00000019330	r3hdm1	96	42.901	ENSTNIG00000010362	r3hdm1	91	43.568	Tetraodon_nigroviridis
ENSXETG00000019330	r3hdm1	100	64.575	ENSTTRG00000003935	R3HDM1	89	64.879	Tursiops_truncatus
ENSXETG00000019330	r3hdm1	79	67.436	ENSUAMG00000024806	R3HDM1	94	71.401	Ursus_americanus
ENSXETG00000019330	r3hdm1	100	65.927	ENSUMAG00000005552	R3HDM1	89	66.129	Ursus_maritimus
ENSXETG00000019330	r3hdm1	83	70.343	ENSVPAG00000007333	R3HDM1	74	70.330	Vicugna_pacos
ENSXETG00000019330	r3hdm1	100	66.667	ENSVVUG00000006457	R3HDM1	89	66.868	Vulpes_vulpes
ENSXETG00000019330	r3hdm1	74	49.347	ENSXCOG00000017448	r3hdm1	92	48.549	Xiphophorus_couchianus
ENSXETG00000019330	r3hdm1	99	43.231	ENSXMAG00000007885	r3hdm1	99	42.272	Xiphophorus_maculatus