EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000021829 (Gene tree)
Gene ID: -
Gene Symbol: lsm8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 6514 bases
Position: chrGL172757.1:1135744-1142257
Accession: XB-GENE-986008
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000047201	LSM	PF01423.22	1.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000047201	-	294	-	ENSXETP00000047201	97 (aa)	-	F6VGY7

Gene Model

Click here to download ENSXETG00000021829's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000021829's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000021829	lsm8	87	34.091	ENSXETG00000009004	lsm1	64	34.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000021829	lsm8	92	96.629	ENSG00000128534	LSM8	100	97.333	Homo_sapiens
ENSXETG00000021829	lsm8	92	94.382	ENSAPOG00000008649	lsm8	93	94.382	Acanthochromis_polyacanthus
ENSXETG00000021829	lsm8	92	96.629	ENSAMEG00000001162	LSM8	93	96.629	Ailuropoda_melanoleuca
ENSXETG00000021829	lsm8	77	97.333	ENSACIG00000014694	lsm8	100	97.333	Amphilophus_citrinellus
ENSXETG00000021829	lsm8	92	94.382	ENSAOCG00000013926	lsm8	93	94.382	Amphiprion_ocellaris
ENSXETG00000021829	lsm8	92	94.382	ENSAPEG00000023502	lsm8	93	94.382	Amphiprion_percula
ENSXETG00000021829	lsm8	77	97.333	ENSATEG00000023432	lsm8	100	97.333	Anabas_testudineus
ENSXETG00000021829	lsm8	88	98.824	ENSAPLG00000005115	LSM8	86	98.824	Anas_platyrhynchos
ENSXETG00000021829	lsm8	92	96.629	ENSANAG00000027771	LSM8	100	94.595	Aotus_nancymaae
ENSXETG00000021829	lsm8	92	94.382	ENSACLG00000011253	lsm8	93	94.382	Astatotilapia_calliptera
ENSXETG00000021829	lsm8	92	96.629	ENSAMXG00000042902	lsm8	93	96.629	Astyanax_mexicanus
ENSXETG00000021829	lsm8	92	96.629	ENSBTAG00000012649	LSM8	93	96.629	Bos_taurus
ENSXETG00000021829	lsm8	90	57.471	WBGene00003082	lsm-8	89	57.471	Caenorhabditis_elegans
ENSXETG00000021829	lsm8	92	96.629	ENSCJAG00000046406	LSM8	100	94.595	Callithrix_jacchus
ENSXETG00000021829	lsm8	90	98.851	ENSCAFG00000016459	LSM8	88	98.851	Canis_familiaris
ENSXETG00000021829	lsm8	92	96.629	ENSCAFG00020007643	-	93	96.629	Canis_lupus_dingo
ENSXETG00000021829	lsm8	80	97.436	ENSCAFG00020012800	-	61	97.436	Canis_lupus_dingo
ENSXETG00000021829	lsm8	96	89.247	ENSCHIG00000014201	LSM8	99	89.247	Capra_hircus
ENSXETG00000021829	lsm8	92	96.629	ENSTSYG00000032434	LSM8	93	96.629	Carlito_syrichta
ENSXETG00000021829	lsm8	76	95.946	ENSCAPG00000008253	LSM8	100	95.946	Cavia_aperea
ENSXETG00000021829	lsm8	92	96.629	ENSCPOG00000035673	LSM8	93	96.629	Cavia_porcellus
ENSXETG00000021829	lsm8	92	96.629	ENSCCAG00000021329	LSM8	100	94.595	Cebus_capucinus
ENSXETG00000021829	lsm8	92	96.629	ENSCATG00000045302	LSM8	100	94.595	Cercocebus_atys
ENSXETG00000021829	lsm8	92	96.629	ENSCLAG00000003726	LSM8	93	96.629	Chinchilla_lanigera
ENSXETG00000021829	lsm8	92	96.629	ENSCSAG00000010802	-	93	96.629	Chlorocebus_sabaeus
ENSXETG00000021829	lsm8	92	92.135	ENSCSAG00000019007	-	93	92.135	Chlorocebus_sabaeus
ENSXETG00000021829	lsm8	88	97.647	ENSCPBG00000008154	LSM8	87	97.647	Chrysemys_picta_bellii
ENSXETG00000021829	lsm8	91	73.864	ENSCING00000024877	-	92	73.864	Ciona_intestinalis
ENSXETG00000021829	lsm8	92	96.629	ENSCANG00000040728	LSM8	100	94.595	Colobus_angolensis_palliatus
ENSXETG00000021829	lsm8	92	96.629	ENSCGRG00001000450	Lsm8	93	96.629	Cricetulus_griseus_chok1gshd
ENSXETG00000021829	lsm8	88	97.647	ENSCGRG00000005587	Lsm8	100	97.647	Cricetulus_griseus_crigri
ENSXETG00000021829	lsm8	92	82.022	ENSCSEG00000004164	lsm8	92	82.022	Cynoglossus_semilaevis
ENSXETG00000021829	lsm8	92	93.258	ENSCVAG00000020547	lsm8	93	93.258	Cyprinodon_variegatus
ENSXETG00000021829	lsm8	92	94.382	ENSDARG00000091656	lsm8	93	94.382	Danio_rerio
ENSXETG00000021829	lsm8	92	96.629	ENSDNOG00000034613	LSM8	93	96.629	Dasypus_novemcinctus
ENSXETG00000021829	lsm8	92	96.629	ENSDORG00000027868	Lsm8	93	96.629	Dipodomys_ordii
ENSXETG00000021829	lsm8	92	68.539	FBgn0035271	CG2021	94	68.539	Drosophila_melanogaster
ENSXETG00000021829	lsm8	92	97.753	ENSETEG00000011594	LSM8	93	97.753	Echinops_telfairi
ENSXETG00000021829	lsm8	76	91.892	ENSEBUG00000012017	lsm8	100	91.892	Eptatretus_burgeri
ENSXETG00000021829	lsm8	92	96.629	ENSEASG00005008932	LSM8	58	96.629	Equus_asinus_asinus
ENSXETG00000021829	lsm8	88	97.647	ENSECAG00000024025	LSM8	77	97.647	Equus_caballus
ENSXETG00000021829	lsm8	92	93.258	ENSELUG00000010138	lsm8	93	93.258	Esox_lucius
ENSXETG00000021829	lsm8	88	70.588	ENSFCAG00000044794	-	87	70.588	Felis_catus
ENSXETG00000021829	lsm8	92	96.629	ENSFCAG00000036620	-	93	96.629	Felis_catus
ENSXETG00000021829	lsm8	92	97.753	ENSFALG00000010023	LSM8	93	97.753	Ficedula_albicollis
ENSXETG00000021829	lsm8	92	96.629	ENSFDAG00000019530	LSM8	93	96.629	Fukomys_damarensis
ENSXETG00000021829	lsm8	92	94.382	ENSFHEG00000013729	lsm8	93	94.382	Fundulus_heteroclitus
ENSXETG00000021829	lsm8	92	97.753	ENSGALG00000009110	LSM8	93	97.753	Gallus_gallus
ENSXETG00000021829	lsm8	92	93.258	ENSGAFG00000001135	lsm8	93	93.258	Gambusia_affinis
ENSXETG00000021829	lsm8	92	96.629	ENSGAGG00000017366	LSM8	93	96.629	Gopherus_agassizii
ENSXETG00000021829	lsm8	92	96.629	ENSGGOG00000041883	LSM8	93	96.629	Gorilla_gorilla
ENSXETG00000021829	lsm8	92	94.382	ENSHBUG00000003646	lsm8	93	94.382	Haplochromis_burtoni
ENSXETG00000021829	lsm8	90	93.103	ENSHGLG00000019782	-	91	93.103	Heterocephalus_glaber_female
ENSXETG00000021829	lsm8	63	98.361	ENSHGLG00000001988	-	88	98.361	Heterocephalus_glaber_female
ENSXETG00000021829	lsm8	90	96.552	ENSHGLG00100003934	-	87	96.552	Heterocephalus_glaber_male
ENSXETG00000021829	lsm8	92	92.135	ENSHGLG00100012166	-	93	92.135	Heterocephalus_glaber_male
ENSXETG00000021829	lsm8	92	93.258	ENSHCOG00000005037	lsm8	93	93.258	Hippocampus_comes
ENSXETG00000021829	lsm8	92	96.629	ENSIPUG00000019811	NAA38	93	96.629	Ictalurus_punctatus
ENSXETG00000021829	lsm8	92	96.629	ENSSTOG00000009039	LSM8	93	96.629	Ictidomys_tridecemlineatus
ENSXETG00000021829	lsm8	91	84.091	ENSSTOG00000034801	-	81	84.091	Ictidomys_tridecemlineatus
ENSXETG00000021829	lsm8	92	96.629	ENSJJAG00000009031	Lsm8	92	96.629	Jaculus_jaculus
ENSXETG00000021829	lsm8	92	94.382	ENSKMAG00000018983	lsm8	93	94.382	Kryptolebias_marmoratus
ENSXETG00000021829	lsm8	92	94.382	ENSLACG00000010231	LSM8	93	94.382	Latimeria_chalumnae
ENSXETG00000021829	lsm8	92	95.506	ENSLOCG00000015580	lsm8	93	95.506	Lepisosteus_oculatus
ENSXETG00000021829	lsm8	90	96.552	ENSLAFG00000011242	LSM8	90	96.552	Loxodonta_africana
ENSXETG00000021829	lsm8	92	92.135	ENSMFAG00000013044	-	93	92.135	Macaca_fascicularis
ENSXETG00000021829	lsm8	92	96.629	ENSMFAG00000035798	LSM8	100	94.595	Macaca_fascicularis
ENSXETG00000021829	lsm8	92	96.629	ENSMMUG00000046401	LSM8	100	94.595	Macaca_mulatta
ENSXETG00000021829	lsm8	92	96.629	ENSMNEG00000036764	-	100	94.595	Macaca_nemestrina
ENSXETG00000021829	lsm8	77	93.333	ENSMNEG00000011141	-	100	93.333	Macaca_nemestrina
ENSXETG00000021829	lsm8	92	96.629	ENSMLEG00000035828	-	100	94.595	Mandrillus_leucophaeus
ENSXETG00000021829	lsm8	92	79.775	ENSMLEG00000039324	-	92	79.775	Mandrillus_leucophaeus
ENSXETG00000021829	lsm8	77	97.333	ENSMAMG00000018839	lsm8	100	97.333	Mastacembelus_armatus
ENSXETG00000021829	lsm8	92	94.382	ENSMZEG00005019138	lsm8	93	94.382	Maylandia_zebra
ENSXETG00000021829	lsm8	92	97.753	ENSMGAG00000008808	LSM8	93	97.753	Meleagris_gallopavo
ENSXETG00000021829	lsm8	90	79.310	ENSMAUG00000015356	-	89	79.310	Mesocricetus_auratus
ENSXETG00000021829	lsm8	85	96.341	ENSMAUG00000015721	-	86	96.341	Mesocricetus_auratus
ENSXETG00000021829	lsm8	74	90.278	ENSMAUG00000020287	-	100	87.838	Mesocricetus_auratus
ENSXETG00000021829	lsm8	92	96.629	ENSMICG00000042730	LSM8	93	96.629	Microcebus_murinus
ENSXETG00000021829	lsm8	92	96.629	ENSMOCG00000001688	Lsm8	93	96.629	Microtus_ochrogaster
ENSXETG00000021829	lsm8	77	97.333	ENSMMOG00000006046	lsm8	100	97.333	Mola_mola
ENSXETG00000021829	lsm8	75	86.667	ENSMODG00000015729	LSM8	96	86.667	Monodelphis_domestica
ENSXETG00000021829	lsm8	92	95.506	ENSMALG00000000405	lsm8	93	95.506	Monopterus_albus
ENSXETG00000021829	lsm8	92	96.629	MGP_CAROLIEiJ_G0028125	-	93	96.629	Mus_caroli
ENSXETG00000021829	lsm8	92	96.629	ENSMUSG00000044155	Lsm8	93	96.629	Mus_musculus
ENSXETG00000021829	lsm8	92	96.629	MGP_PahariEiJ_G0021881	Lsm8	100	97.333	Mus_pahari
ENSXETG00000021829	lsm8	92	96.629	MGP_SPRETEiJ_G0029125	-	93	96.629	Mus_spretus
ENSXETG00000021829	lsm8	92	95.506	ENSMLUG00000027762	-	93	95.506	Myotis_lucifugus
ENSXETG00000021829	lsm8	92	96.629	ENSMLUG00000006837	-	93	96.629	Myotis_lucifugus
ENSXETG00000021829	lsm8	92	96.629	ENSNGAG00000016554	Lsm8	93	96.629	Nannospalax_galili
ENSXETG00000021829	lsm8	92	94.382	ENSNBRG00000014441	lsm8	93	94.382	Neolamprologus_brichardi
ENSXETG00000021829	lsm8	92	96.629	ENSNLEG00000011768	LSM8	93	96.629	Nomascus_leucogenys
ENSXETG00000021829	lsm8	92	84.270	ENSMEUG00000007801	LSM8	93	84.270	Notamacropus_eugenii
ENSXETG00000021829	lsm8	88	97.647	ENSOPRG00000014809	LSM8	100	97.647	Ochotona_princeps
ENSXETG00000021829	lsm8	92	96.629	ENSODEG00000000418	-	93	96.629	Octodon_degus
ENSXETG00000021829	lsm8	81	82.278	ENSODEG00000020290	-	92	82.278	Octodon_degus
ENSXETG00000021829	lsm8	92	95.506	ENSOANG00000014536	LSM8	93	95.506	Ornithorhynchus_anatinus
ENSXETG00000021829	lsm8	90	96.552	ENSOCUG00000017359	LSM8	90	96.552	Oryctolagus_cuniculus
ENSXETG00000021829	lsm8	92	83.146	ENSORLG00000017432	lsm8	93	83.146	Oryzias_latipes
ENSXETG00000021829	lsm8	92	83.146	ENSORLG00020004376	lsm8	93	83.146	Oryzias_latipes_hni
ENSXETG00000021829	lsm8	92	94.382	ENSORLG00015003757	lsm8	93	94.382	Oryzias_latipes_hsok
ENSXETG00000021829	lsm8	71	97.101	ENSOMEG00000022509	lsm8	92	82.022	Oryzias_melastigma
ENSXETG00000021829	lsm8	92	96.629	ENSOGAG00000013377	LSM8	93	96.629	Otolemur_garnettii
ENSXETG00000021829	lsm8	92	96.629	ENSOARG00000017974	LSM8	93	96.629	Ovis_aries
ENSXETG00000021829	lsm8	77	97.333	ENSPPAG00000043228	-	100	97.333	Pan_paniscus
ENSXETG00000021829	lsm8	92	96.629	ENSPPRG00000006444	LSM8	93	96.629	Panthera_pardus
ENSXETG00000021829	lsm8	92	96.629	ENSPTIG00000004722	LSM8	93	96.629	Panthera_tigris_altaica
ENSXETG00000021829	lsm8	77	97.333	ENSPTRG00000046596	-	100	97.333	Pan_troglodytes
ENSXETG00000021829	lsm8	92	91.011	ENSPANG00000019395	-	93	91.011	Papio_anubis
ENSXETG00000021829	lsm8	92	96.629	ENSPANG00000035470	-	100	94.595	Papio_anubis
ENSXETG00000021829	lsm8	88	97.647	ENSPKIG00000006092	lsm8	86	97.647	Paramormyrops_kingsleyae
ENSXETG00000021829	lsm8	77	97.333	ENSPSIG00000017054	LSM8	100	97.333	Pelodiscus_sinensis
ENSXETG00000021829	lsm8	77	97.333	ENSPMGG00000016442	lsm8	100	97.333	Periophthalmus_magnuspinnatus
ENSXETG00000021829	lsm8	76	94.595	ENSPEMG00000009153	Lsm8	100	94.595	Peromyscus_maniculatus_bairdii
ENSXETG00000021829	lsm8	89	98.837	ENSPCIG00000021467	LSM8	91	98.837	Phascolarctos_cinereus
ENSXETG00000021829	lsm8	92	93.258	ENSPFOG00000012340	lsm8	93	93.258	Poecilia_formosa
ENSXETG00000021829	lsm8	88	94.118	ENSPLAG00000000516	lsm8	89	94.118	Poecilia_latipinna
ENSXETG00000021829	lsm8	92	93.258	ENSPMEG00000022567	lsm8	93	93.258	Poecilia_mexicana
ENSXETG00000021829	lsm8	75	85.000	ENSPREG00000005527	lsm8	72	85.000	Poecilia_reticulata
ENSXETG00000021829	lsm8	92	96.629	ENSPPYG00000017942	LSM8	93	96.629	Pongo_abelii
ENSXETG00000021829	lsm8	92	96.629	ENSPCOG00000003309	-	93	96.629	Propithecus_coquereli
ENSXETG00000021829	lsm8	89	76.744	ENSPCOG00000017982	-	88	76.744	Propithecus_coquereli
ENSXETG00000021829	lsm8	88	96.471	ENSPVAG00000000990	LSM8	100	96.471	Pteropus_vampyrus
ENSXETG00000021829	lsm8	92	94.382	ENSPNYG00000011448	lsm8	93	94.382	Pundamilia_nyererei
ENSXETG00000021829	lsm8	92	96.629	ENSPNAG00000010252	lsm8	93	96.629	Pygocentrus_nattereri
ENSXETG00000021829	lsm8	92	96.629	ENSRNOG00000058677	Lsm8	93	96.629	Rattus_norvegicus
ENSXETG00000021829	lsm8	92	96.629	ENSRBIG00000032851	LSM8	100	94.595	Rhinopithecus_bieti
ENSXETG00000021829	lsm8	92	96.629	ENSRROG00000039618	LSM8	100	94.595	Rhinopithecus_roxellana
ENSXETG00000021829	lsm8	92	96.629	ENSSBOG00000023223	LSM8	100	94.595	Saimiri_boliviensis_boliviensis
ENSXETG00000021829	lsm8	92	96.629	ENSSHAG00000018435	-	93	96.629	Sarcophilus_harrisii
ENSXETG00000021829	lsm8	92	93.258	ENSSFOG00015004412	lsm8	93	93.258	Scleropages_formosus
ENSXETG00000021829	lsm8	77	94.667	ENSSMAG00000009458	lsm8	100	94.667	Scophthalmus_maximus
ENSXETG00000021829	lsm8	92	94.382	ENSSDUG00000014702	lsm8	93	94.382	Seriola_dumerili
ENSXETG00000021829	lsm8	77	97.333	ENSSLDG00000016870	lsm8	100	97.333	Seriola_lalandi_dorsalis
ENSXETG00000021829	lsm8	74	97.222	ENSSARG00000009628	-	100	97.222	Sorex_araneus
ENSXETG00000021829	lsm8	92	96.629	ENSSPUG00000017419	LSM8	93	96.629	Sphenodon_punctatus
ENSXETG00000021829	lsm8	92	94.382	ENSSPAG00000021422	lsm8	93	94.382	Stegastes_partitus
ENSXETG00000021829	lsm8	92	96.629	ENSSSCG00000021652	LSM8	93	96.629	Sus_scrofa
ENSXETG00000021829	lsm8	92	96.629	ENSTGUG00000016823	-	93	96.629	Taeniopygia_guttata
ENSXETG00000021829	lsm8	92	97.753	ENSTGUG00000004730	-	93	97.753	Taeniopygia_guttata
ENSXETG00000021829	lsm8	92	94.382	ENSTRUG00000025192	lsm8	93	94.382	Takifugu_rubripes
ENSXETG00000021829	lsm8	92	94.382	ENSTNIG00000002864	lsm8	93	94.382	Tetraodon_nigroviridis
ENSXETG00000021829	lsm8	92	96.629	ENSTTRG00000001023	LSM8	93	96.629	Tursiops_truncatus
ENSXETG00000021829	lsm8	88	97.647	ENSUAMG00000006943	-	89	97.647	Ursus_americanus
ENSXETG00000021829	lsm8	88	97.647	ENSUMAG00000003073	LSM8	90	97.647	Ursus_maritimus
ENSXETG00000021829	lsm8	92	96.629	ENSVPAG00000001530	LSM8	93	96.629	Vicugna_pacos
ENSXETG00000021829	lsm8	77	94.667	ENSVVUG00000013248	-	82	94.667	Vulpes_vulpes
ENSXETG00000021829	lsm8	94	87.912	ENSXCOG00000012938	lsm8	96	87.912	Xiphophorus_couchianus
ENSXETG00000021829	lsm8	92	93.258	ENSXMAG00000025919	lsm8	93	93.258	Xiphophorus_maculatus