EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000022166 (Gene tree)
Gene ID: -
Gene Symbol: lsm7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 6497 bases
Position: chrGL173191.1:555587-562083
Accession: XB-GENE-1008123
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000047968	LSM	PF01423.22	1.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000047968	-	693	-	ENSXETP00000047968	101 (aa)	-	F7DRD0

Gene Model

Click here to download ENSXETG00000022166's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000022166's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000022166	lsm7	70	35.211	ENSXETG00000008512	snrpg	83	35.211

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000022166	lsm7	100	95.050	ENSG00000130332	LSM7	100	93.878	Homo_sapiens
ENSXETG00000022166	lsm7	97	92.857	ENSAPOG00000015573	lsm7	84	92.857	Acanthochromis_polyacanthus
ENSXETG00000022166	lsm7	100	94.059	ENSAMEG00000005484	LSM7	98	94.059	Ailuropoda_melanoleuca
ENSXETG00000022166	lsm7	96	94.845	ENSACIG00000006498	lsm7	77	94.845	Amphilophus_citrinellus
ENSXETG00000022166	lsm7	100	95.050	ENSAOCG00000001077	lsm7	92	95.050	Amphiprion_ocellaris
ENSXETG00000022166	lsm7	100	95.050	ENSAPEG00000000694	lsm7	98	95.050	Amphiprion_percula
ENSXETG00000022166	lsm7	100	95.050	ENSAPEG00000024447	lsm7	92	95.050	Amphiprion_percula
ENSXETG00000022166	lsm7	100	95.050	ENSATEG00000008557	lsm7	98	95.050	Anabas_testudineus
ENSXETG00000022166	lsm7	100	86.139	ENSANAG00000022222	-	98	86.139	Aotus_nancymaae
ENSXETG00000022166	lsm7	100	95.050	ENSANAG00000037196	-	98	95.050	Aotus_nancymaae
ENSXETG00000022166	lsm7	100	94.059	ENSACLG00000021021	lsm7	98	94.059	Astatotilapia_calliptera
ENSXETG00000022166	lsm7	100	95.050	ENSAMXG00000037622	lsm7	98	95.050	Astyanax_mexicanus
ENSXETG00000022166	lsm7	100	95.050	ENSBTAG00000004521	LSM7	98	95.050	Bos_taurus
ENSXETG00000022166	lsm7	99	59.000	WBGene00003081	lsm-7	96	59.000	Caenorhabditis_elegans
ENSXETG00000022166	lsm7	53	96.296	ENSCJAG00000039713	-	66	96.296	Callithrix_jacchus
ENSXETG00000022166	lsm7	100	94.059	ENSCAFG00000019409	LSM7	98	94.059	Canis_familiaris
ENSXETG00000022166	lsm7	100	94.059	ENSCAFG00020018168	LSM7	74	95.000	Canis_lupus_dingo
ENSXETG00000022166	lsm7	100	95.050	ENSCHIG00000023663	LSM7	98	95.050	Capra_hircus
ENSXETG00000022166	lsm7	70	94.366	ENSCAPG00000014534	LSM7	100	94.366	Cavia_aperea
ENSXETG00000022166	lsm7	100	95.050	ENSCPOG00000014025	LSM7	100	95.050	Cavia_porcellus
ENSXETG00000022166	lsm7	100	95.050	ENSCCAG00000035456	LSM7	99	95.050	Cebus_capucinus
ENSXETG00000022166	lsm7	100	95.050	ENSCATG00000023543	LSM7	98	95.050	Cercocebus_atys
ENSXETG00000022166	lsm7	100	95.050	ENSCLAG00000011635	LSM7	98	95.050	Chinchilla_lanigera
ENSXETG00000022166	lsm7	100	95.050	ENSCSAG00000011599	LSM7	98	95.050	Chlorocebus_sabaeus
ENSXETG00000022166	lsm7	71	97.222	ENSCPBG00000021317	LSM7	77	97.222	Chrysemys_picta_bellii
ENSXETG00000022166	lsm7	95	82.292	ENSCING00000022134	-	97	82.292	Ciona_intestinalis
ENSXETG00000022166	lsm7	100	95.050	ENSCANG00000035525	LSM7	98	95.050	Colobus_angolensis_palliatus
ENSXETG00000022166	lsm7	89	86.667	ENSCGRG00001016005	-	92	86.667	Cricetulus_griseus_chok1gshd
ENSXETG00000022166	lsm7	100	96.040	ENSCGRG00001000807	-	98	96.040	Cricetulus_griseus_chok1gshd
ENSXETG00000022166	lsm7	89	86.667	ENSCGRG00000006821	-	92	86.667	Cricetulus_griseus_crigri
ENSXETG00000022166	lsm7	100	96.040	ENSCGRG00000014355	-	97	96.040	Cricetulus_griseus_crigri
ENSXETG00000022166	lsm7	100	95.050	ENSCSEG00000014900	lsm7	86	95.050	Cynoglossus_semilaevis
ENSXETG00000022166	lsm7	100	95.050	ENSCVAG00000021091	lsm7	94	95.050	Cyprinodon_variegatus
ENSXETG00000022166	lsm7	100	95.050	ENSDARG00000058328	lsm7	98	95.050	Danio_rerio
ENSXETG00000022166	lsm7	100	95.050	ENSDORG00000024460	Lsm7	99	95.050	Dipodomys_ordii
ENSXETG00000022166	lsm7	96	74.490	FBgn0261068	LSm7	89	74.490	Drosophila_melanogaster
ENSXETG00000022166	lsm7	100	92.079	ENSETEG00000012788	LSM7	99	92.079	Echinops_telfairi
ENSXETG00000022166	lsm7	100	84.158	ENSEBUG00000016992	lsm7	97	84.158	Eptatretus_burgeri
ENSXETG00000022166	lsm7	82	60.241	ENSEBUG00000010470	-	79	60.241	Eptatretus_burgeri
ENSXETG00000022166	lsm7	100	95.050	ENSECAG00000001440	LSM7	65	95.050	Equus_caballus
ENSXETG00000022166	lsm7	100	94.059	ENSFCAG00000003445	LSM7	98	94.059	Felis_catus
ENSXETG00000022166	lsm7	100	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSXETG00000022166	lsm7	95	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSXETG00000022166	lsm7	91	94.565	ENSFHEG00000006349	lsm7	90	95.050	Fundulus_heteroclitus
ENSXETG00000022166	lsm7	100	95.050	ENSGMOG00000013320	lsm7	98	95.050	Gadus_morhua
ENSXETG00000022166	lsm7	100	95.050	ENSGAFG00000013902	lsm7	98	95.050	Gambusia_affinis
ENSXETG00000022166	lsm7	100	96.040	ENSGACG00000010390	lsm7	98	96.040	Gasterosteus_aculeatus
ENSXETG00000022166	lsm7	100	95.050	ENSGGOG00000010172	LSM7	98	95.050	Gorilla_gorilla
ENSXETG00000022166	lsm7	100	94.059	ENSHBUG00000004616	lsm7	98	94.059	Haplochromis_burtoni
ENSXETG00000022166	lsm7	100	95.050	ENSHGLG00000010587	LSM7	98	95.050	Heterocephalus_glaber_female
ENSXETG00000022166	lsm7	100	95.050	ENSHGLG00100000852	LSM7	98	95.050	Heterocephalus_glaber_male
ENSXETG00000022166	lsm7	100	94.059	ENSHCOG00000020252	lsm7	100	94.059	Hippocampus_comes
ENSXETG00000022166	lsm7	100	96.040	ENSIPUG00000024724	lsm7	98	96.040	Ictalurus_punctatus
ENSXETG00000022166	lsm7	100	95.050	ENSSTOG00000028372	LSM7	99	95.050	Ictidomys_tridecemlineatus
ENSXETG00000022166	lsm7	99	97.000	ENSJJAG00000001936	Lsm7	97	97.000	Jaculus_jaculus
ENSXETG00000022166	lsm7	100	95.050	ENSKMAG00000022151	lsm7	98	95.050	Kryptolebias_marmoratus
ENSXETG00000022166	lsm7	100	95.050	ENSLBEG00000005203	lsm7	98	95.050	Labrus_bergylta
ENSXETG00000022166	lsm7	100	96.040	ENSLACG00000015700	LSM7	98	96.040	Latimeria_chalumnae
ENSXETG00000022166	lsm7	100	95.050	ENSLOCG00000004356	lsm7	98	95.050	Lepisosteus_oculatus
ENSXETG00000022166	lsm7	100	95.050	ENSLAFG00000029302	LSM7	98	95.050	Loxodonta_africana
ENSXETG00000022166	lsm7	100	95.050	ENSMFAG00000044572	LSM7	98	95.050	Macaca_fascicularis
ENSXETG00000022166	lsm7	100	95.050	ENSMMUG00000000452	LSM7	99	95.050	Macaca_mulatta
ENSXETG00000022166	lsm7	100	95.050	ENSMNEG00000004393	LSM7	98	95.050	Macaca_nemestrina
ENSXETG00000022166	lsm7	100	95.050	ENSMLEG00000030852	LSM7	100	95.050	Mandrillus_leucophaeus
ENSXETG00000022166	lsm7	100	94.059	ENSMAMG00000005410	lsm7	98	94.059	Mastacembelus_armatus
ENSXETG00000022166	lsm7	100	94.059	ENSMZEG00005028055	lsm7	98	94.059	Maylandia_zebra
ENSXETG00000022166	lsm7	100	97.030	ENSMGAG00000000750	LSM7	87	97.030	Meleagris_gallopavo
ENSXETG00000022166	lsm7	100	96.040	ENSMAUG00000009276	Lsm7	98	96.040	Mesocricetus_auratus
ENSXETG00000022166	lsm7	100	95.050	ENSMICG00000009988	-	98	95.050	Microcebus_murinus
ENSXETG00000022166	lsm7	100	95.050	ENSMICG00000028619	-	98	95.050	Microcebus_murinus
ENSXETG00000022166	lsm7	100	96.040	ENSMOCG00000016925	Lsm7	98	96.040	Microtus_ochrogaster
ENSXETG00000022166	lsm7	100	95.050	ENSMMOG00000019645	lsm7	96	95.050	Mola_mola
ENSXETG00000022166	lsm7	100	96.040	ENSMODG00000004722	LSM7	98	96.040	Monodelphis_domestica
ENSXETG00000022166	lsm7	100	94.059	ENSMALG00000014511	lsm7	78	94.059	Monopterus_albus
ENSXETG00000022166	lsm7	99	96.000	MGP_CAROLIEiJ_G0015607	Lsm7	97	96.000	Mus_caroli
ENSXETG00000022166	lsm7	99	96.000	ENSMUSG00000035215	Lsm7	97	96.000	Mus_musculus
ENSXETG00000022166	lsm7	99	96.000	MGP_PahariEiJ_G0031020	Lsm7	97	96.000	Mus_pahari
ENSXETG00000022166	lsm7	99	96.000	MGP_SPRETEiJ_G0016425	Lsm7	97	96.000	Mus_spretus
ENSXETG00000022166	lsm7	100	96.040	ENSMLUG00000013097	-	98	96.040	Myotis_lucifugus
ENSXETG00000022166	lsm7	99	91.000	ENSMLUG00000024002	-	92	91.000	Myotis_lucifugus
ENSXETG00000022166	lsm7	100	95.050	ENSNGAG00000021637	Lsm7	98	95.050	Nannospalax_galili
ENSXETG00000022166	lsm7	100	94.059	ENSNBRG00000015770	lsm7	87	94.059	Neolamprologus_brichardi
ENSXETG00000022166	lsm7	93	94.681	ENSNBRG00000001237	-	81	94.059	Neolamprologus_brichardi
ENSXETG00000022166	lsm7	100	95.050	ENSNLEG00000002265	LSM7	98	95.050	Nomascus_leucogenys
ENSXETG00000022166	lsm7	100	95.050	ENSODEG00000013590	-	98	95.050	Octodon_degus
ENSXETG00000022166	lsm7	100	88.119	ENSODEG00000018769	-	98	88.119	Octodon_degus
ENSXETG00000022166	lsm7	100	75.248	ENSODEG00000008190	-	98	75.248	Octodon_degus
ENSXETG00000022166	lsm7	100	94.059	ENSONIG00000001801	lsm7	87	94.059	Oreochromis_niloticus
ENSXETG00000022166	lsm7	100	95.050	ENSORLG00000023951	lsm7	98	95.050	Oryzias_latipes
ENSXETG00000022166	lsm7	100	95.050	ENSORLG00020022226	lsm7	98	95.050	Oryzias_latipes_hni
ENSXETG00000022166	lsm7	100	95.050	ENSORLG00015020044	lsm7	94	95.050	Oryzias_latipes_hsok
ENSXETG00000022166	lsm7	100	95.050	ENSOMEG00000012806	lsm7	98	95.050	Oryzias_melastigma
ENSXETG00000022166	lsm7	100	85.149	ENSOGAG00000024373	-	98	85.149	Otolemur_garnettii
ENSXETG00000022166	lsm7	100	95.050	ENSOGAG00000000144	-	99	95.050	Otolemur_garnettii
ENSXETG00000022166	lsm7	100	95.050	ENSOARG00000014013	LSM7	98	95.050	Ovis_aries
ENSXETG00000022166	lsm7	100	95.050	ENSPPAG00000026500	LSM7	98	95.050	Pan_paniscus
ENSXETG00000022166	lsm7	100	94.059	ENSPPRG00000008624	LSM7	98	94.059	Panthera_pardus
ENSXETG00000022166	lsm7	100	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSXETG00000022166	lsm7	100	95.050	ENSPTRG00000010233	LSM7	98	95.050	Pan_troglodytes
ENSXETG00000022166	lsm7	100	95.050	ENSPANG00000020668	LSM7	98	95.050	Papio_anubis
ENSXETG00000022166	lsm7	100	96.040	ENSPKIG00000011325	lsm7	98	96.040	Paramormyrops_kingsleyae
ENSXETG00000022166	lsm7	100	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSXETG00000022166	lsm7	100	95.050	ENSPMGG00000006498	lsm7	98	95.050	Periophthalmus_magnuspinnatus
ENSXETG00000022166	lsm7	100	96.040	ENSPCIG00000030454	LSM7	99	96.040	Phascolarctos_cinereus
ENSXETG00000022166	lsm7	100	94.059	ENSPFOG00000012467	lsm7	89	94.059	Poecilia_formosa
ENSXETG00000022166	lsm7	100	94.059	ENSPLAG00000000252	lsm7	94	94.059	Poecilia_latipinna
ENSXETG00000022166	lsm7	100	94.059	ENSPMEG00000000587	lsm7	94	94.059	Poecilia_mexicana
ENSXETG00000022166	lsm7	77	75.949	ENSPREG00000016718	lsm7	63	75.949	Poecilia_reticulata
ENSXETG00000022166	lsm7	72	93.151	ENSPPYG00000009348	-	50	93.151	Pongo_abelii
ENSXETG00000022166	lsm7	100	95.050	ENSPCOG00000017177	LSM7	99	95.050	Propithecus_coquereli
ENSXETG00000022166	lsm7	100	94.059	ENSPNYG00000006938	lsm7	98	94.059	Pundamilia_nyererei
ENSXETG00000022166	lsm7	100	95.050	ENSPNAG00000010141	lsm7	99	95.050	Pygocentrus_nattereri
ENSXETG00000022166	lsm7	99	97.000	ENSRNOG00000019552	Lsm7	97	97.000	Rattus_norvegicus
ENSXETG00000022166	lsm7	100	95.050	ENSRBIG00000035978	LSM7	98	95.050	Rhinopithecus_bieti
ENSXETG00000022166	lsm7	100	95.050	ENSRROG00000034044	LSM7	98	95.050	Rhinopithecus_roxellana
ENSXETG00000022166	lsm7	85	49.438	YNL147W	-	77	49.438	Saccharomyces_cerevisiae
ENSXETG00000022166	lsm7	100	95.050	ENSSBOG00000034899	LSM7	98	95.050	Saimiri_boliviensis_boliviensis
ENSXETG00000022166	lsm7	100	94.059	ENSSFOG00015006728	lsm7	98	94.059	Scleropages_formosus
ENSXETG00000022166	lsm7	100	95.050	ENSSMAG00000004195	lsm7	93	95.050	Scophthalmus_maximus
ENSXETG00000022166	lsm7	100	95.050	ENSSDUG00000001863	lsm7	98	95.050	Seriola_dumerili
ENSXETG00000022166	lsm7	100	95.050	ENSSLDG00000016339	lsm7	98	95.050	Seriola_lalandi_dorsalis
ENSXETG00000022166	lsm7	100	95.050	ENSSPAG00000015221	lsm7	98	95.050	Stegastes_partitus
ENSXETG00000022166	lsm7	100	95.050	ENSSSCG00000013463	LSM7	99	95.050	Sus_scrofa
ENSXETG00000022166	lsm7	100	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSXETG00000022166	lsm7	100	95.050	ENSTRUG00000022913	lsm7	98	95.050	Takifugu_rubripes
ENSXETG00000022166	lsm7	100	95.050	ENSTNIG00000015525	lsm7	98	95.050	Tetraodon_nigroviridis
ENSXETG00000022166	lsm7	69	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSXETG00000022166	lsm7	100	94.059	ENSUAMG00000000912	LSM7	84	94.059	Ursus_americanus
ENSXETG00000022166	lsm7	100	94.059	ENSUMAG00000006556	LSM7	78	95.000	Ursus_maritimus
ENSXETG00000022166	lsm7	70	92.958	ENSVVUG00000002640	LSM7	65	92.958	Vulpes_vulpes
ENSXETG00000022166	lsm7	100	95.050	ENSXCOG00000002572	lsm7	99	95.050	Xiphophorus_couchianus
ENSXETG00000022166	lsm7	100	95.050	ENSXMAG00000018630	lsm7	98	95.050	Xiphophorus_maculatus