EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000022831 (Gene tree)
Gene ID: -
Gene Symbol: pabpc1l
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 19251 bases
Position: chrGL172970.1:987386-1006636
Accession: XB-GENE-5742459
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000049382	PABP	PF00658.18	1.2e-31	1	1
ENSXETP00000058706	PABP	PF00658.18	3.5e-29	1	1
ENSXETP00000058706	RRM_1	PF00076.22	6e-84	1	4
ENSXETP00000058706	RRM_1	PF00076.22	6e-84	2	4
ENSXETP00000058706	RRM_1	PF00076.22	6e-84	3	4
ENSXETP00000058706	RRM_1	PF00076.22	6e-84	4	4
ENSXETP00000049382	RRM_1	PF00076.22	1.9e-83	1	4
ENSXETP00000049382	RRM_1	PF00076.22	1.9e-83	2	4
ENSXETP00000049382	RRM_1	PF00076.22	1.9e-83	3	4
ENSXETP00000049382	RRM_1	PF00076.22	1.9e-83	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000049382	-	1893	-	ENSXETP00000049382	630 (aa)	-	F7D793
ENSXETT00000060599	-	1893	-	ENSXETP00000058706	630 (aa)	-	F6SW00

Gene Model

Click here to download ENSXETG00000022831's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000022831's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000022831	pabpc1l	55	37.333	ENSXETG00000017668	rbm19	52	37.333
ENSXETG00000022831	pabpc1l	61	30.464	ENSXETG00000009387	elavl2	99	30.496
ENSXETG00000022831	pabpc1l	58	86.310	ENSXETG00000027221	-	100	86.310
ENSXETG00000022831	pabpc1l	99	65.764	ENSXETG00000010946	pabpc4	98	65.764
ENSXETG00000022831	pabpc1l	51	38.462	ENSXETG00000014344	celf5	55	37.349
ENSXETG00000022831	pabpc1l	58	33.721	ENSXETG00000008752	elavl1	95	33.721
ENSXETG00000022831	pabpc1l	61	30.588	ENSXETG00000016741	elavl3	90	30.588
ENSXETG00000022831	pabpc1l	97	38.657	ENSXETG00000015439	-	96	38.657
ENSXETG00000022831	pabpc1l	58	39.205	ENSXETG00000011038	sf3b4	51	37.037
ENSXETG00000022831	pabpc1l	99	68.927	ENSXETG00000006635	pabpc1	99	68.927

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000022831	pabpc1l	98	70.048	ENSG00000101104	PABPC1L	98	73.457	Homo_sapiens
ENSXETG00000022831	pabpc1l	99	68.631	ENSAPOG00000010842	pabpc1l	99	68.631	Acanthochromis_polyacanthus
ENSXETG00000022831	pabpc1l	98	65.432	ENSAMEG00000004099	PABPC1L	100	65.741	Ailuropoda_melanoleuca
ENSXETG00000022831	pabpc1l	99	69.634	ENSACIG00000021004	-	99	71.991	Amphilophus_citrinellus
ENSXETG00000022831	pabpc1l	99	68.504	ENSAOCG00000006167	-	99	68.661	Amphiprion_ocellaris
ENSXETG00000022831	pabpc1l	99	69.316	ENSAPEG00000010558	-	97	83.568	Amphiprion_percula
ENSXETG00000022831	pabpc1l	99	70.747	ENSATEG00000007428	pabpc1l	99	70.906	Anabas_testudineus
ENSXETG00000022831	pabpc1l	97	75.767	ENSAPLG00000008415	PABPC1L	99	75.845	Anas_platyrhynchos
ENSXETG00000022831	pabpc1l	100	75.868	ENSACAG00000011841	PABPC1L	99	75.868	Anolis_carolinensis
ENSXETG00000022831	pabpc1l	98	69.712	ENSANAG00000026826	PABPC1L	99	69.712	Aotus_nancymaae
ENSXETG00000022831	pabpc1l	99	70.411	ENSACLG00000024791	pabpc1l	99	70.411	Astatotilapia_calliptera
ENSXETG00000022831	pabpc1l	99	71.542	ENSAMXG00000013552	pabpc1l	99	71.542	Astyanax_mexicanus
ENSXETG00000022831	pabpc1l	60	66.122	ENSBTAG00000016849	PABPC1L	74	66.122	Bos_taurus
ENSXETG00000022831	pabpc1l	54	91.667	ENSBTAG00000055300	-	100	91.667	Bos_taurus
ENSXETG00000022831	pabpc1l	55	79.310	ENSCJAG00000038506	-	100	79.310	Callithrix_jacchus
ENSXETG00000022831	pabpc1l	98	69.712	ENSCJAG00000017628	PABPC1L	99	69.712	Callithrix_jacchus
ENSXETG00000022831	pabpc1l	98	63.957	ENSCAFG00000009573	PABPC1L	100	63.957	Canis_familiaris
ENSXETG00000022831	pabpc1l	98	69.181	ENSCAFG00020013828	PABPC1L	99	69.181	Canis_lupus_dingo
ENSXETG00000022831	pabpc1l	97	69.281	ENSCHIG00000025759	PABPC1L	91	69.281	Capra_hircus
ENSXETG00000022831	pabpc1l	98	68.211	ENSTSYG00000006645	PABPC1L	99	68.211	Carlito_syrichta
ENSXETG00000022831	pabpc1l	97	63.538	ENSCAPG00000014519	PABPC1L	99	63.538	Cavia_aperea
ENSXETG00000022831	pabpc1l	98	67.252	ENSCPOG00000013633	PABPC1L	99	67.252	Cavia_porcellus
ENSXETG00000022831	pabpc1l	98	69.071	ENSCCAG00000023338	PABPC1L	99	69.872	Cebus_capucinus
ENSXETG00000022831	pabpc1l	98	70.048	ENSCATG00000034065	PABPC1L	99	70.032	Cercocebus_atys
ENSXETG00000022831	pabpc1l	98	66.029	ENSCLAG00000005298	PABPC1L	99	66.986	Chinchilla_lanigera
ENSXETG00000022831	pabpc1l	98	69.887	ENSCSAG00000014242	PABPC1L	99	69.872	Chlorocebus_sabaeus
ENSXETG00000022831	pabpc1l	55	84.733	ENSCPBG00000007810	-	94	84.733	Chrysemys_picta_bellii
ENSXETG00000022831	pabpc1l	70	83.747	ENSCPBG00000017755	-	99	83.747	Chrysemys_picta_bellii
ENSXETG00000022831	pabpc1l	96	49.405	ENSCING00000002796	-	97	49.200	Ciona_intestinalis
ENSXETG00000022831	pabpc1l	98	54.518	ENSCSAVG00000003102	-	100	81.879	Ciona_savignyi
ENSXETG00000022831	pabpc1l	98	58.320	ENSCSAVG00000004246	-	89	70.199	Ciona_savignyi
ENSXETG00000022831	pabpc1l	98	66.984	ENSCANG00000037530	PABPC1L	99	66.983	Colobus_angolensis_palliatus
ENSXETG00000022831	pabpc1l	99	60.890	ENSCGRG00001021938	Pabpc1l	99	60.890	Cricetulus_griseus_chok1gshd
ENSXETG00000022831	pabpc1l	99	60.890	ENSCGRG00000007946	Pabpc1l	99	60.890	Cricetulus_griseus_crigri
ENSXETG00000022831	pabpc1l	85	78.947	ENSCSEG00000021295	pabpc1l	94	78.947	Cynoglossus_semilaevis
ENSXETG00000022831	pabpc1l	99	69.600	ENSCVAG00000015943	-	86	90.076	Cyprinodon_variegatus
ENSXETG00000022831	pabpc1l	99	71.224	ENSDARG00000002597	pabpc1l	88	90.000	Danio_rerio
ENSXETG00000022831	pabpc1l	98	71.314	ENSDNOG00000048450	PABPC1L	99	71.314	Dasypus_novemcinctus
ENSXETG00000022831	pabpc1l	98	67.255	ENSDORG00000001067	Pabpc1l	99	67.255	Dipodomys_ordii
ENSXETG00000022831	pabpc1l	94	80.894	ENSETEG00000009969	PABPC1L	72	80.894	Echinops_telfairi
ENSXETG00000022831	pabpc1l	54	91.667	ENSEASG00005023408	-	100	91.667	Equus_asinus_asinus
ENSXETG00000022831	pabpc1l	56	61.692	ENSEASG00005023407	-	79	62.500	Equus_asinus_asinus
ENSXETG00000022831	pabpc1l	64	66.228	ENSECAG00000040139	-	81	66.228	Equus_caballus
ENSXETG00000022831	pabpc1l	99	67.147	ENSEEUG00000005978	PABPC1L	99	67.147	Erinaceus_europaeus
ENSXETG00000022831	pabpc1l	99	72.742	ENSELUG00000001811	pabpc1l	96	81.553	Esox_lucius
ENSXETG00000022831	pabpc1l	98	70.465	ENSFCAG00000011692	PABPC1L	99	70.465	Felis_catus
ENSXETG00000022831	pabpc1l	85	75.791	ENSFALG00000005372	PABPC1L	90	75.791	Ficedula_albicollis
ENSXETG00000022831	pabpc1l	98	65.273	ENSFDAG00000008291	PABPC1L	99	65.329	Fukomys_damarensis
ENSXETG00000022831	pabpc1l	99	70.095	ENSFHEG00000003398	pabpc1l	99	70.095	Fundulus_heteroclitus
ENSXETG00000022831	pabpc1l	100	70.932	ENSGMOG00000004437	pabpc1l	100	70.932	Gadus_morhua
ENSXETG00000022831	pabpc1l	85	81.053	ENSGALG00000004123	PABPC1L	98	83.535	Gallus_gallus
ENSXETG00000022831	pabpc1l	99	66.316	ENSGAFG00000021057	pabpc1l	99	66.316	Gambusia_affinis
ENSXETG00000022831	pabpc1l	99	69.572	ENSGACG00000002792	pabpc1l	100	69.572	Gasterosteus_aculeatus
ENSXETG00000022831	pabpc1l	100	79.937	ENSGAGG00000000589	PABPC1L	99	79.937	Gopherus_agassizii
ENSXETG00000022831	pabpc1l	98	69.887	ENSGGOG00000004584	PABPC1L	99	70.032	Gorilla_gorilla
ENSXETG00000022831	pabpc1l	99	70.253	ENSHBUG00000006134	pabpc1l	99	70.253	Haplochromis_burtoni
ENSXETG00000022831	pabpc1l	98	66.827	ENSHGLG00000008434	PABPC1L	99	66.987	Heterocephalus_glaber_female
ENSXETG00000022831	pabpc1l	98	66.827	ENSHGLG00100012151	PABPC1L	99	66.987	Heterocephalus_glaber_male
ENSXETG00000022831	pabpc1l	57	84.270	ENSHGLG00100019506	-	100	84.270	Heterocephalus_glaber_male
ENSXETG00000022831	pabpc1l	98	67.987	ENSHCOG00000009270	pabpc1l	99	67.987	Hippocampus_comes
ENSXETG00000022831	pabpc1l	99	72.178	ENSIPUG00000012602	pabpc1l	99	72.178	Ictalurus_punctatus
ENSXETG00000022831	pabpc1l	58	63.793	ENSIPUG00000006760	-	87	63.793	Ictalurus_punctatus
ENSXETG00000022831	pabpc1l	58	63.793	ENSIPUG00000006780	-	84	63.793	Ictalurus_punctatus
ENSXETG00000022831	pabpc1l	98	68.599	ENSSTOG00000003739	PABPC1L	99	68.599	Ictidomys_tridecemlineatus
ENSXETG00000022831	pabpc1l	98	52.773	ENSJJAG00000022406	Pabpc1l	99	51.364	Jaculus_jaculus
ENSXETG00000022831	pabpc1l	99	69.537	ENSKMAG00000016847	pabpc1l	100	69.537	Kryptolebias_marmoratus
ENSXETG00000022831	pabpc1l	99	71.044	ENSLBEG00000010084	pabpc1l	99	71.044	Labrus_bergylta
ENSXETG00000022831	pabpc1l	99	73.742	ENSLACG00000005762	PABPC1L	98	75.279	Latimeria_chalumnae
ENSXETG00000022831	pabpc1l	99	74.686	ENSLOCG00000007519	pabpc1l	99	74.686	Lepisosteus_oculatus
ENSXETG00000022831	pabpc1l	98	68.800	ENSLAFG00000003553	PABPC1L	100	68.800	Loxodonta_africana
ENSXETG00000022831	pabpc1l	98	70.209	ENSMFAG00000040365	PABPC1L	99	70.192	Macaca_fascicularis
ENSXETG00000022831	pabpc1l	98	68.599	ENSMNEG00000032298	PABPC1L	99	68.590	Macaca_nemestrina
ENSXETG00000022831	pabpc1l	98	70.048	ENSMLEG00000043139	PABPC1L	99	70.032	Mandrillus_leucophaeus
ENSXETG00000022831	pabpc1l	96	70.608	ENSMAMG00000011854	pabpc1l	97	70.608	Mastacembelus_armatus
ENSXETG00000022831	pabpc1l	99	70.411	ENSMZEG00005023713	pabpc1l	99	70.411	Maylandia_zebra
ENSXETG00000022831	pabpc1l	99	77.070	ENSMGAG00000003674	PABPC1L	99	77.070	Meleagris_gallopavo
ENSXETG00000022831	pabpc1l	99	59.683	ENSMOCG00000013186	Pabpc1l	99	59.683	Microtus_ochrogaster
ENSXETG00000022831	pabpc1l	99	70.175	ENSMMOG00000020574	-	90	90.769	Mola_mola
ENSXETG00000022831	pabpc1l	96	73.083	ENSMODG00000016198	PABPC1L	99	73.083	Monodelphis_domestica
ENSXETG00000022831	pabpc1l	96	68.954	ENSMALG00000021622	pabpc1l	100	68.954	Monopterus_albus
ENSXETG00000022831	pabpc1l	99	60.383	MGP_CAROLIEiJ_G0024627	Pabpc1l	100	60.383	Mus_caroli
ENSXETG00000022831	pabpc1l	99	60.383	ENSMUSG00000054582	Pabpc1l	100	60.383	Mus_musculus
ENSXETG00000022831	pabpc1l	99	61.648	MGP_PahariEiJ_G0026071	Pabpc1l	99	61.648	Mus_pahari
ENSXETG00000022831	pabpc1l	99	60.383	MGP_SPRETEiJ_G0025549	Pabpc1l	100	60.383	Mus_spretus
ENSXETG00000022831	pabpc1l	98	70.192	ENSMPUG00000017646	PABPC1L	99	70.192	Mustela_putorius_furo
ENSXETG00000022831	pabpc1l	97	66.827	ENSMLUG00000006324	PABPC1L	98	66.827	Myotis_lucifugus
ENSXETG00000022831	pabpc1l	98	62.179	ENSNGAG00000010458	Pabpc1l	99	62.179	Nannospalax_galili
ENSXETG00000022831	pabpc1l	99	70.654	ENSNBRG00000016633	pabpc1l	99	72.477	Neolamprologus_brichardi
ENSXETG00000022831	pabpc1l	89	67.021	ENSMEUG00000007905	-	89	67.021	Notamacropus_eugenii
ENSXETG00000022831	pabpc1l	99	67.250	ENSOPRG00000011846	PABPC1L	100	67.250	Ochotona_princeps
ENSXETG00000022831	pabpc1l	98	61.514	ENSODEG00000015482	PABPC1L	99	61.514	Octodon_degus
ENSXETG00000022831	pabpc1l	57	77.500	ENSODEG00000002920	-	97	77.500	Octodon_degus
ENSXETG00000022831	pabpc1l	99	70.411	ENSONIG00000017314	pabpc1l	99	70.411	Oreochromis_niloticus
ENSXETG00000022831	pabpc1l	89	63.139	ENSOANG00000015793	-	100	63.139	Ornithorhynchus_anatinus
ENSXETG00000022831	pabpc1l	98	63.328	ENSOCUG00000003005	PABPC1L	99	63.328	Oryctolagus_cuniculus
ENSXETG00000022831	pabpc1l	99	69.489	ENSORLG00000010322	pabpc1l	99	72.158	Oryzias_latipes
ENSXETG00000022831	pabpc1l	99	69.697	ENSORLG00020021193	pabpc1l	99	72.158	Oryzias_latipes_hni
ENSXETG00000022831	pabpc1l	99	69.329	ENSORLG00015017018	pabpc1l	99	72.158	Oryzias_latipes_hsok
ENSXETG00000022831	pabpc1l	99	66.112	ENSOMEG00000010789	pabpc1l	99	66.112	Oryzias_melastigma
ENSXETG00000022831	pabpc1l	99	69.683	ENSOGAG00000032999	PABPC1L	100	69.683	Otolemur_garnettii
ENSXETG00000022831	pabpc1l	98	69.293	ENSOARG00000004578	PABPC1L	99	69.293	Ovis_aries
ENSXETG00000022831	pabpc1l	98	70.209	ENSPPAG00000039677	PABPC1L	99	70.192	Pan_paniscus
ENSXETG00000022831	pabpc1l	61	71.827	ENSPPRG00000019327	-	98	71.827	Panthera_pardus
ENSXETG00000022831	pabpc1l	97	70.502	ENSPTIG00000006524	PABPC1L	99	70.502	Panthera_tigris_altaica
ENSXETG00000022831	pabpc1l	61	73.765	ENSPTRG00000013531	PABPC1L	98	73.765	Pan_troglodytes
ENSXETG00000022831	pabpc1l	98	70.048	ENSPANG00000018788	PABPC1L	99	70.032	Papio_anubis
ENSXETG00000022831	pabpc1l	52	83.969	ENSPKIG00000016810	-	93	83.969	Paramormyrops_kingsleyae
ENSXETG00000022831	pabpc1l	99	73.046	ENSPKIG00000007322	pabpc1l	99	73.046	Paramormyrops_kingsleyae
ENSXETG00000022831	pabpc1l	66	83.933	ENSPSIG00000013289	PABPC1L	99	83.933	Pelodiscus_sinensis
ENSXETG00000022831	pabpc1l	70	60.000	ENSPMGG00000023121	-	90	60.000	Periophthalmus_magnuspinnatus
ENSXETG00000022831	pabpc1l	60	85.581	ENSPMGG00000023117	pabpc1l	97	85.581	Periophthalmus_magnuspinnatus
ENSXETG00000022831	pabpc1l	98	59.486	ENSPEMG00000020671	Pabpc1l	99	59.744	Peromyscus_maniculatus_bairdii
ENSXETG00000022831	pabpc1l	99	69.826	ENSPFOG00000013241	pabpc1l	99	69.826	Poecilia_formosa
ENSXETG00000022831	pabpc1l	99	69.668	ENSPLAG00000017490	-	99	69.668	Poecilia_latipinna
ENSXETG00000022831	pabpc1l	52	91.538	ENSPLAG00000023686	-	92	91.538	Poecilia_latipinna
ENSXETG00000022831	pabpc1l	52	91.538	ENSPMEG00000009185	-	88	91.538	Poecilia_mexicana
ENSXETG00000022831	pabpc1l	99	70.206	ENSPMEG00000007677	pabpc1l	99	70.206	Poecilia_mexicana
ENSXETG00000022831	pabpc1l	64	78.325	ENSPREG00000015886	pabpc1l	99	78.325	Poecilia_reticulata
ENSXETG00000022831	pabpc1l	98	69.887	ENSPPYG00000011042	PABPC1L	99	69.872	Pongo_abelii
ENSXETG00000022831	pabpc1l	66	89.062	ENSPCAG00000011787	-	75	89.062	Procavia_capensis
ENSXETG00000022831	pabpc1l	98	69.565	ENSPCOG00000020630	PABPC1L	99	69.551	Propithecus_coquereli
ENSXETG00000022831	pabpc1l	99	67.250	ENSPVAG00000012663	PABPC1L	99	67.250	Pteropus_vampyrus
ENSXETG00000022831	pabpc1l	99	67.891	ENSPNYG00000004101	pabpc1l	99	72.477	Pundamilia_nyererei
ENSXETG00000022831	pabpc1l	99	65.924	ENSPNAG00000021248	pabpc1l	99	65.924	Pygocentrus_nattereri
ENSXETG00000022831	pabpc1l	99	60.514	ENSRNOG00000012750	Pabpc1l	99	61.146	Rattus_norvegicus
ENSXETG00000022831	pabpc1l	98	70.048	ENSRBIG00000035381	PABPC1L	99	70.032	Rhinopithecus_bieti
ENSXETG00000022831	pabpc1l	98	69.887	ENSRROG00000044498	PABPC1L	99	69.872	Rhinopithecus_roxellana
ENSXETG00000022831	pabpc1l	98	69.551	ENSSBOG00000009532	-	99	69.551	Saimiri_boliviensis_boliviensis
ENSXETG00000022831	pabpc1l	97	66.329	ENSSHAG00000011446	PABPC1L	100	66.329	Sarcophilus_harrisii
ENSXETG00000022831	pabpc1l	98	74.157	ENSSFOG00015017304	pabpc1l	99	74.157	Scleropages_formosus
ENSXETG00000022831	pabpc1l	99	69.904	ENSSMAG00000010516	pabpc1l	93	90.698	Scophthalmus_maximus
ENSXETG00000022831	pabpc1l	99	71.111	ENSSDUG00000014743	pabpc1l	99	71.111	Seriola_dumerili
ENSXETG00000022831	pabpc1l	96	69.421	ENSSLDG00000006981	pabpc1l	99	87.560	Seriola_lalandi_dorsalis
ENSXETG00000022831	pabpc1l	100	77.287	ENSSPUG00000004233	PABPC1L	99	77.287	Sphenodon_punctatus
ENSXETG00000022831	pabpc1l	99	64.263	ENSSPAG00000017137	pabpc1l	99	64.263	Stegastes_partitus
ENSXETG00000022831	pabpc1l	98	68.640	ENSSSCG00000007382	PABPC1L	99	68.640	Sus_scrofa
ENSXETG00000022831	pabpc1l	99	74.922	ENSTGUG00000005114	PABPC1L	100	74.922	Taeniopygia_guttata
ENSXETG00000022831	pabpc1l	96	69.558	ENSTRUG00000011085	pabpc1l	97	69.558	Takifugu_rubripes
ENSXETG00000022831	pabpc1l	99	67.244	ENSTNIG00000017903	pabpc1l	99	67.244	Tetraodon_nigroviridis
ENSXETG00000022831	pabpc1l	93	75.265	ENSTBEG00000002851	PABPC1L	78	75.265	Tupaia_belangeri
ENSXETG00000022831	pabpc1l	93	67.966	ENSTTRG00000007618	PABPC1L	100	68.152	Tursiops_truncatus
ENSXETG00000022831	pabpc1l	98	67.788	ENSUAMG00000017682	PABPC1L	99	67.788	Ursus_americanus
ENSXETG00000022831	pabpc1l	65	74.373	ENSUMAG00000025436	PABPC1L	92	74.373	Ursus_maritimus
ENSXETG00000022831	pabpc1l	97	69.170	ENSVVUG00000018939	PABPC1L	98	69.170	Vulpes_vulpes
ENSXETG00000022831	pabpc1l	99	69.108	ENSXCOG00000005459	pabpc1l	99	86.525	Xiphophorus_couchianus
ENSXETG00000022831	pabpc1l	99	69.194	ENSXMAG00000017135	pabpc1l	99	69.194	Xiphophorus_maculatus