EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000023043 (Gene tree)
Gene ID: -
Gene Symbol: snd1
Alias: -
Full Name: staphylococcal nuclease and tudor domain containing protein 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 356692 bases
Position: chrGL173116.1:49500-406191
Accession: XB-GENE-5756796
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000049810	TUDOR	PF00567.24	1.3e-21	1	1
ENSXETP00000058373	TUDOR	PF00567.24	1.5e-21	1	1
ENSXETP00000049810	SNase	PF00565.17	4.1e-64	1	4
ENSXETP00000049810	SNase	PF00565.17	4.1e-64	2	4
ENSXETP00000049810	SNase	PF00565.17	4.1e-64	3	4
ENSXETP00000049810	SNase	PF00565.17	4.1e-64	4	4
ENSXETP00000058373	SNase	PF00565.17	7.8e-64	1	4
ENSXETP00000058373	SNase	PF00565.17	7.8e-64	2	4
ENSXETP00000058373	SNase	PF00565.17	7.8e-64	3	4
ENSXETP00000058373	SNase	PF00565.17	7.8e-64	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000049810	-	2595	-	ENSXETP00000049810	865 (aa)	-	F6SAJ8
ENSXETT00000063879	-	2652	-	ENSXETP00000058373	884 (aa)	-	F6RDJ2

Gene Model

Click here to download ENSXETG00000023043's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000023043's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000023043	snd1	100	85.566	ENSG00000197157	SND1	97	84.633	Homo_sapiens
ENSXETG00000023043	snd1	100	79.909	ENSAPOG00000017599	snd1	97	80.158	Acanthochromis_polyacanthus
ENSXETG00000023043	snd1	100	84.817	ENSAMEG00000004664	SND1	92	84.893	Ailuropoda_melanoleuca
ENSXETG00000023043	snd1	100	78.057	ENSACIG00000003551	snd1	97	78.104	Amphilophus_citrinellus
ENSXETG00000023043	snd1	100	79.909	ENSAOCG00000014166	snd1	97	80.158	Amphiprion_ocellaris
ENSXETG00000023043	snd1	100	79.909	ENSAPEG00000007067	snd1	97	80.158	Amphiprion_percula
ENSXETG00000023043	snd1	100	80.708	ENSATEG00000018475	snd1	87	81.933	Anabas_testudineus
ENSXETG00000023043	snd1	100	84.668	ENSANAG00000034463	SND1	99	84.746	Aotus_nancymaae
ENSXETG00000023043	snd1	100	80.936	ENSACLG00000022897	snd1	97	80.947	Astatotilapia_calliptera
ENSXETG00000023043	snd1	100	79.841	ENSAMXG00000016318	snd1	97	79.865	Astyanax_mexicanus
ENSXETG00000023043	snd1	100	84.554	ENSBTAG00000010692	SND1	97	84.633	Bos_taurus
ENSXETG00000023043	snd1	100	44.932	WBGene00006626	tsn-1	96	44.932	Caenorhabditis_elegans
ENSXETG00000023043	snd1	100	84.783	ENSCJAG00000017668	SND1	99	84.859	Callithrix_jacchus
ENSXETG00000023043	snd1	100	84.783	ENSCAFG00000001700	SND1	97	84.859	Canis_familiaris
ENSXETG00000023043	snd1	100	84.783	ENSCAFG00020021639	SND1	97	84.859	Canis_lupus_dingo
ENSXETG00000023043	snd1	100	84.783	ENSCHIG00000023390	SND1	98	84.859	Capra_hircus
ENSXETG00000023043	snd1	76	91.197	ENSTSYG00000004979	SND1	96	91.197	Carlito_syrichta
ENSXETG00000023043	snd1	100	73.973	ENSCAPG00000010677	SND1	97	73.244	Cavia_aperea
ENSXETG00000023043	snd1	100	84.439	ENSCPOG00000006251	SND1	97	84.407	Cavia_porcellus
ENSXETG00000023043	snd1	100	84.668	ENSCCAG00000036847	SND1	98	84.746	Cebus_capucinus
ENSXETG00000023043	snd1	100	84.668	ENSCATG00000035214	SND1	99	84.746	Cercocebus_atys
ENSXETG00000023043	snd1	100	84.783	ENSCLAG00000011796	SND1	93	91.197	Chinchilla_lanigera
ENSXETG00000023043	snd1	100	84.668	ENSCSAG00000010182	SND1	97	84.746	Chlorocebus_sabaeus
ENSXETG00000023043	snd1	80	68.078	ENSCHOG00000002218	SND1	86	68.078	Choloepus_hoffmanni
ENSXETG00000023043	snd1	100	85.240	ENSCPBG00000018094	SND1	97	85.198	Chrysemys_picta_bellii
ENSXETG00000023043	snd1	100	54.721	ENSCING00000000524	-	97	53.898	Ciona_intestinalis
ENSXETG00000023043	snd1	100	55.224	ENSCSAVG00000008807	-	97	54.157	Ciona_savignyi
ENSXETG00000023043	snd1	100	84.668	ENSCANG00000035119	SND1	97	84.746	Colobus_angolensis_palliatus
ENSXETG00000023043	snd1	100	83.982	ENSCGRG00001022514	Snd1	93	90.493	Cricetulus_griseus_chok1gshd
ENSXETG00000023043	snd1	100	83.982	ENSCGRG00000012277	Snd1	99	83.973	Cricetulus_griseus_crigri
ENSXETG00000023043	snd1	100	78.881	ENSCSEG00000008661	snd1	97	79.358	Cynoglossus_semilaevis
ENSXETG00000023043	snd1	100	79.795	ENSCVAG00000010316	snd1	98	78.984	Cyprinodon_variegatus
ENSXETG00000023043	snd1	100	80.160	ENSDARG00000006766	snd1	93	87.079	Danio_rerio
ENSXETG00000023043	snd1	100	82.534	ENSDNOG00000006795	SND1	99	82.638	Dasypus_novemcinctus
ENSXETG00000023043	snd1	100	84.325	ENSDORG00000000336	Snd1	97	84.407	Dipodomys_ordii
ENSXETG00000023043	snd1	100	49.391	FBgn0035121	Tudor-SN	96	48.837	Drosophila_melanogaster
ENSXETG00000023043	snd1	88	67.318	ENSETEG00000000375	SND1	88	67.263	Echinops_telfairi
ENSXETG00000023043	snd1	63	66.142	ENSEBUG00000014201	-	84	76.503	Eptatretus_burgeri
ENSXETG00000023043	snd1	98	86.275	ENSEASG00005008513	SND1	97	83.463	Equus_asinus_asinus
ENSXETG00000023043	snd1	100	84.783	ENSECAG00000011451	SND1	97	84.407	Equus_caballus
ENSXETG00000023043	snd1	98	77.804	ENSEEUG00000014737	SND1	93	79.059	Erinaceus_europaeus
ENSXETG00000023043	snd1	100	79.157	ENSELUG00000001805	snd1	94	79.190	Esox_lucius
ENSXETG00000023043	snd1	100	84.668	ENSFCAG00000008289	SND1	97	84.746	Felis_catus
ENSXETG00000023043	snd1	100	85.219	ENSFDAG00000015881	SND1	97	84.520	Fukomys_damarensis
ENSXETG00000023043	snd1	98	80.653	ENSFHEG00000004093	snd1	96	81.808	Fundulus_heteroclitus
ENSXETG00000023043	snd1	70	66.197	ENSGMOG00000018932	snd1	62	66.197	Gadus_morhua
ENSXETG00000023043	snd1	100	80.023	ENSGAFG00000008421	snd1	99	80.158	Gambusia_affinis
ENSXETG00000023043	snd1	100	49.887	ENSGACG00000019793	snd1	97	49.723	Gasterosteus_aculeatus
ENSXETG00000023043	snd1	100	84.668	ENSGGOG00000009614	SND1	99	84.746	Gorilla_gorilla
ENSXETG00000023043	snd1	100	81.050	ENSHBUG00000019135	snd1	97	81.060	Haplochromis_burtoni
ENSXETG00000023043	snd1	100	84.325	ENSHGLG00000003618	SND1	93	90.669	Heterocephalus_glaber_female
ENSXETG00000023043	snd1	100	84.325	ENSHGLG00100012449	SND1	97	84.407	Heterocephalus_glaber_male
ENSXETG00000023043	snd1	100	79.338	ENSHCOG00000005266	snd1	97	79.481	Hippocampus_comes
ENSXETG00000023043	snd1	100	80.000	ENSIPUG00000013279	snd1	97	79.190	Ictalurus_punctatus
ENSXETG00000023043	snd1	100	84.668	ENSSTOG00000002140	SND1	97	84.746	Ictidomys_tridecemlineatus
ENSXETG00000023043	snd1	100	84.897	ENSJJAG00000009561	Snd1	97	84.972	Jaculus_jaculus
ENSXETG00000023043	snd1	100	80.023	ENSKMAG00000016997	snd1	97	80.158	Kryptolebias_marmoratus
ENSXETG00000023043	snd1	100	84.912	ENSLBEG00000013563	snd1	97	84.912	Labrus_bergylta
ENSXETG00000023043	snd1	100	81.279	ENSLOCG00000015537	snd1	97	80.670	Lepisosteus_oculatus
ENSXETG00000023043	snd1	100	84.783	ENSLAFG00000009696	SND1	97	84.859	Loxodonta_africana
ENSXETG00000023043	snd1	100	84.668	ENSMFAG00000038114	SND1	99	84.746	Macaca_fascicularis
ENSXETG00000023043	snd1	100	84.668	ENSMMUG00000015432	SND1	93	91.327	Macaca_mulatta
ENSXETG00000023043	snd1	100	84.668	ENSMNEG00000039808	SND1	97	91.327	Macaca_nemestrina
ENSXETG00000023043	snd1	100	84.554	ENSMLEG00000029040	SND1	97	91.327	Mandrillus_leucophaeus
ENSXETG00000023043	snd1	100	80.594	ENSMAMG00000011739	snd1	97	80.722	Mastacembelus_armatus
ENSXETG00000023043	snd1	100	80.936	ENSMZEG00005005681	snd1	97	80.947	Maylandia_zebra
ENSXETG00000023043	snd1	100	84.325	ENSMICG00000000097	SND1	97	84.407	Microcebus_murinus
ENSXETG00000023043	snd1	100	84.096	ENSMOCG00000005040	Snd1	97	84.181	Microtus_ochrogaster
ENSXETG00000023043	snd1	100	80.023	ENSMMOG00000001795	snd1	97	80.158	Mola_mola
ENSXETG00000023043	snd1	100	84.211	ENSMODG00000015182	SND1	97	84.294	Monodelphis_domestica
ENSXETG00000023043	snd1	100	79.452	ENSMALG00000012071	snd1	97	79.707	Monopterus_albus
ENSXETG00000023043	snd1	100	83.867	MGP_CAROLIEiJ_G0028159	Snd1	95	90.300	Mus_caroli
ENSXETG00000023043	snd1	100	83.638	ENSMUSG00000001424	Snd1	95	88.448	Mus_musculus
ENSXETG00000023043	snd1	100	83.867	MGP_PahariEiJ_G0021917	Snd1	96	90.300	Mus_pahari
ENSXETG00000023043	snd1	100	83.867	MGP_SPRETEiJ_G0029159	Snd1	95	88.793	Mus_spretus
ENSXETG00000023043	snd1	100	84.783	ENSMPUG00000006545	SND1	97	84.181	Mustela_putorius_furo
ENSXETG00000023043	snd1	100	83.277	ENSMLUG00000017130	SND1	99	82.609	Myotis_lucifugus
ENSXETG00000023043	snd1	100	84.325	ENSNGAG00000011186	Snd1	97	84.407	Nannospalax_galili
ENSXETG00000023043	snd1	100	80.936	ENSNBRG00000006681	snd1	97	80.947	Neolamprologus_brichardi
ENSXETG00000023043	snd1	100	84.668	ENSNLEG00000012263	SND1	95	91.358	Nomascus_leucogenys
ENSXETG00000023043	snd1	88	78.516	ENSOPRG00000013405	SND1	86	78.133	Ochotona_princeps
ENSXETG00000023043	snd1	100	84.897	ENSODEG00000011502	SND1	97	84.972	Octodon_degus
ENSXETG00000023043	snd1	100	80.936	ENSONIG00000011481	snd1	94	80.947	Oreochromis_niloticus
ENSXETG00000023043	snd1	100	85.126	ENSOANG00000000817	SND1	97	85.198	Ornithorhynchus_anatinus
ENSXETG00000023043	snd1	100	84.554	ENSOCUG00000001620	SND1	97	84.633	Oryctolagus_cuniculus
ENSXETG00000023043	snd1	100	79.954	ENSORLG00000015201	snd1	97	80.552	Oryzias_latipes
ENSXETG00000023043	snd1	100	80.300	ENSORLG00020013991	snd1	97	80.854	Oryzias_latipes_hni
ENSXETG00000023043	snd1	100	80.184	ENSORLG00015012436	snd1	97	79.481	Oryzias_latipes_hsok
ENSXETG00000023043	snd1	100	79.452	ENSOMEG00000006406	snd1	97	79.594	Oryzias_melastigma
ENSXETG00000023043	snd1	100	84.361	ENSOGAG00000013356	SND1	91	84.442	Otolemur_garnettii
ENSXETG00000023043	snd1	100	82.609	ENSOARG00000002149	SND1	99	82.712	Ovis_aries
ENSXETG00000023043	snd1	100	85.566	ENSPPAG00000042947	SND1	99	84.633	Pan_paniscus
ENSXETG00000023043	snd1	100	84.668	ENSPPRG00000004494	SND1	97	84.746	Panthera_pardus
ENSXETG00000023043	snd1	100	84.554	ENSPTIG00000014214	SND1	96	85.928	Panthera_tigris_altaica
ENSXETG00000023043	snd1	100	85.566	ENSPTRG00000023911	SND1	99	84.633	Pan_troglodytes
ENSXETG00000023043	snd1	100	84.668	ENSPANG00000011997	SND1	99	84.746	Papio_anubis
ENSXETG00000023043	snd1	100	78.743	ENSPKIG00000023494	snd1	97	77.964	Paramormyrops_kingsleyae
ENSXETG00000023043	snd1	95	81.004	ENSPMGG00000003629	snd1	100	81.004	Periophthalmus_magnuspinnatus
ENSXETG00000023043	snd1	100	84.096	ENSPEMG00000010240	Snd1	97	84.181	Peromyscus_maniculatus_bairdii
ENSXETG00000023043	snd1	100	73.121	ENSPMAG00000007915	-	98	73.739	Petromyzon_marinus
ENSXETG00000023043	snd1	100	84.439	ENSPCIG00000011561	SND1	97	84.520	Phascolarctos_cinereus
ENSXETG00000023043	snd1	100	79.795	ENSPFOG00000001557	snd1	97	79.932	Poecilia_formosa
ENSXETG00000023043	snd1	100	80.023	ENSPLAG00000018459	snd1	94	80.158	Poecilia_latipinna
ENSXETG00000023043	snd1	100	79.680	ENSPMEG00000006803	snd1	97	79.820	Poecilia_mexicana
ENSXETG00000023043	snd1	100	79.795	ENSPREG00000002189	snd1	97	79.932	Poecilia_reticulata
ENSXETG00000023043	snd1	88	86.328	ENSPPYG00000017972	SND1	93	85.806	Pongo_abelii
ENSXETG00000023043	snd1	100	74.371	ENSPCAG00000011305	SND1	97	74.576	Procavia_capensis
ENSXETG00000023043	snd1	100	85.335	ENSPCOG00000026791	SND1	99	84.633	Propithecus_coquereli
ENSXETG00000023043	snd1	100	82.723	ENSPVAG00000013945	SND1	97	82.825	Pteropus_vampyrus
ENSXETG00000023043	snd1	100	80.936	ENSPNYG00000000932	snd1	97	80.947	Pundamilia_nyererei
ENSXETG00000023043	snd1	100	80.296	ENSPNAG00000001206	snd1	97	80.315	Pygocentrus_nattereri
ENSXETG00000023043	snd1	100	84.873	ENSRNOG00000031173	Snd1	99	83.616	Rattus_norvegicus
ENSXETG00000023043	snd1	76	91.337	ENSRBIG00000027782	-	93	91.255	Rhinopithecus_bieti
ENSXETG00000023043	snd1	100	84.668	ENSRROG00000033020	SND1	97	84.746	Rhinopithecus_roxellana
ENSXETG00000023043	snd1	100	84.668	ENSSBOG00000032461	SND1	96	88.946	Saimiri_boliviensis_boliviensis
ENSXETG00000023043	snd1	100	81.693	ENSSHAG00000015359	SND1	99	81.828	Sarcophilus_harrisii
ENSXETG00000023043	snd1	100	80.457	ENSSFOG00015001103	snd1	97	79.754	Scleropages_formosus
ENSXETG00000023043	snd1	100	79.452	ENSSMAG00000001932	snd1	92	79.594	Scophthalmus_maximus
ENSXETG00000023043	snd1	100	80.251	ENSSDUG00000002699	snd1	91	80.045	Seriola_dumerili
ENSXETG00000023043	snd1	100	72.945	ENSSLDG00000001950	snd1	97	72.830	Seriola_lalandi_dorsalis
ENSXETG00000023043	snd1	90	82.866	ENSSARG00000004877	SND1	91	82.866	Sorex_araneus
ENSXETG00000023043	snd1	77	84.522	ENSSPUG00000017586	SND1	96	84.522	Sphenodon_punctatus
ENSXETG00000023043	snd1	76	85.664	ENSSPAG00000021398	snd1	94	85.664	Stegastes_partitus
ENSXETG00000023043	snd1	100	84.783	ENSSSCG00000016590	SND1	97	84.859	Sus_scrofa
ENSXETG00000023043	snd1	100	83.922	ENSTRUG00000014067	snd1	97	79.369	Takifugu_rubripes
ENSXETG00000023043	snd1	100	81.336	ENSTNIG00000011019	snd1	94	86.340	Tetraodon_nigroviridis
ENSXETG00000023043	snd1	98	79.439	ENSTBEG00000003999	SND1	100	80.471	Tupaia_belangeri
ENSXETG00000023043	snd1	100	80.778	ENSTTRG00000006059	SND1	97	80.904	Tursiops_truncatus
ENSXETG00000023043	snd1	68	80.223	ENSUAMG00000002820	-	83	80.223	Ursus_americanus
ENSXETG00000023043	snd1	93	81.973	ENSUAMG00000005604	-	93	81.973	Ursus_americanus
ENSXETG00000023043	snd1	100	84.783	ENSUMAG00000005960	SND1	97	84.859	Ursus_maritimus
ENSXETG00000023043	snd1	72	80.952	ENSVPAG00000008302	SND1	70	80.952	Vicugna_pacos
ENSXETG00000023043	snd1	100	84.783	ENSVVUG00000007226	SND1	97	84.859	Vulpes_vulpes
ENSXETG00000023043	snd1	96	78.777	ENSXCOG00000013629	snd1	98	78.973	Xiphophorus_couchianus
ENSXETG00000023043	snd1	100	80.137	ENSXMAG00000011469	snd1	97	80.271	Xiphophorus_maculatus