EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000023799 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 128147 bases
Position: chrGL172903.1:1048137-1176283
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000051324	EST1	PF10374.9	1.9e-16	1	1
ENSXETP00000051324	EST1_DNA_bind	PF10373.9	3.6e-54	1	1
ENSXETP00000051324	PIN_4	PF13638.6	6.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000051324	SMG6-201	4080	-	ENSXETP00000051324	1359 (aa)	-	F7EDL3

Gene Model

Click here to download ENSXETG00000023799's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000023799's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000023799	SMG6	100	59.280	ENSG00000070366	SMG6	100	69.291	Homo_sapiens
ENSXETG00000023799	SMG6	88	49.657	ENSAPOG00000019448	smg6	66	54.783	Acanthochromis_polyacanthus
ENSXETG00000023799	SMG6	99	59.110	ENSAMEG00000007632	SMG6	98	59.393	Ailuropoda_melanoleuca
ENSXETG00000023799	SMG6	74	53.826	ENSAOCG00000002630	smg6	66	54.439	Amphiprion_ocellaris
ENSXETG00000023799	SMG6	74	53.826	ENSAPEG00000019101	smg6	66	54.439	Amphiprion_percula
ENSXETG00000023799	SMG6	74	54.155	ENSATEG00000006483	smg6	65	54.865	Anabas_testudineus
ENSXETG00000023799	SMG6	86	50.660	ENSACAG00000011783	SMG6	96	51.733	Anolis_carolinensis
ENSXETG00000023799	SMG6	100	59.046	ENSANAG00000035760	SMG6	98	59.267	Aotus_nancymaae
ENSXETG00000023799	SMG6	85	51.200	ENSACLG00000005288	smg6	71	55.596	Astatotilapia_calliptera
ENSXETG00000023799	SMG6	70	58.534	ENSAMXG00000017326	smg6	69	58.485	Astyanax_mexicanus
ENSXETG00000023799	SMG6	99	59.267	ENSBTAG00000000267	SMG6	98	59.479	Bos_taurus
ENSXETG00000023799	SMG6	100	59.408	ENSCJAG00000001820	SMG6	98	59.450	Callithrix_jacchus
ENSXETG00000023799	SMG6	99	59.465	ENSCAFG00000019260	SMG6	98	59.507	Canis_familiaris
ENSXETG00000023799	SMG6	99	59.465	ENSCAFG00020009770	SMG6	98	59.507	Canis_lupus_dingo
ENSXETG00000023799	SMG6	99	59.437	ENSCHIG00000021998	SMG6	98	59.648	Capra_hircus
ENSXETG00000023799	SMG6	100	58.463	ENSTSYG00000003406	SMG6	100	68.085	Carlito_syrichta
ENSXETG00000023799	SMG6	91	58.010	ENSCAPG00000016197	SMG6	99	57.757	Cavia_aperea
ENSXETG00000023799	SMG6	100	59.184	ENSCPOG00000014878	SMG6	98	59.366	Cavia_porcellus
ENSXETG00000023799	SMG6	100	58.877	ENSCCAG00000035801	SMG6	98	59.097	Cebus_capucinus
ENSXETG00000023799	SMG6	100	59.056	ENSCATG00000031956	SMG6	98	59.267	Cercocebus_atys
ENSXETG00000023799	SMG6	100	59.314	ENSCLAG00000006748	SMG6	100	59.619	Chinchilla_lanigera
ENSXETG00000023799	SMG6	100	59.097	ENSCSAG00000013800	SMG6	98	59.309	Chlorocebus_sabaeus
ENSXETG00000023799	SMG6	100	58.897	ENSCPBG00000020369	SMG6	98	58.531	Chrysemys_picta_bellii
ENSXETG00000023799	SMG6	99	59.068	ENSCANG00000031764	SMG6	100	68.859	Colobus_angolensis_palliatus
ENSXETG00000023799	SMG6	54	52.264	ENSCGRG00001019595	Smg6	94	52.918	Cricetulus_griseus_chok1gshd
ENSXETG00000023799	SMG6	99	54.488	ENSCGRG00000007782	Smg6	100	55.375	Cricetulus_griseus_crigri
ENSXETG00000023799	SMG6	89	49.886	ENSCSEG00000012757	smg6	69	55.720	Cynoglossus_semilaevis
ENSXETG00000023799	SMG6	76	51.911	ENSCVAG00000012789	smg6	66	53.321	Cyprinodon_variegatus
ENSXETG00000023799	SMG6	77	56.000	ENSDARG00000100481	smg6	78	52.437	Danio_rerio
ENSXETG00000023799	SMG6	100	59.311	ENSDNOG00000048283	SMG6	98	59.452	Dasypus_novemcinctus
ENSXETG00000023799	SMG6	100	56.434	ENSDORG00000016614	Smg6	98	56.390	Dipodomys_ordii
ENSXETG00000023799	SMG6	93	90.476	ENSETEG00000016790	SMG6	91	90.476	Echinops_telfairi
ENSXETG00000023799	SMG6	67	48.004	ENSEBUG00000005059	smg6	62	48.004	Eptatretus_burgeri
ENSXETG00000023799	SMG6	99	59.187	ENSEASG00005009318	SMG6	97	59.257	Equus_asinus_asinus
ENSXETG00000023799	SMG6	99	59.342	ENSECAG00000006519	SMG6	97	59.494	Equus_caballus
ENSXETG00000023799	SMG6	99	51.771	ENSEEUG00000003493	SMG6	98	52.020	Erinaceus_europaeus
ENSXETG00000023799	SMG6	69	57.478	ENSELUG00000005934	smg6	69	52.451	Esox_lucius
ENSXETG00000023799	SMG6	99	59.859	ENSFCAG00000028817	SMG6	98	60.042	Felis_catus
ENSXETG00000023799	SMG6	99	58.526	ENSFALG00000006538	SMG6	100	58.840	Ficedula_albicollis
ENSXETG00000023799	SMG6	100	59.129	ENSFDAG00000015106	SMG6	98	59.423	Fukomys_damarensis
ENSXETG00000023799	SMG6	55	66.355	ENSGMOG00000019077	smg6	58	66.355	Gadus_morhua
ENSXETG00000023799	SMG6	100	57.979	ENSGALG00000003108	SMG6	96	58.473	Gallus_gallus
ENSXETG00000023799	SMG6	75	53.591	ENSGAFG00000000379	smg6	66	54.471	Gambusia_affinis
ENSXETG00000023799	SMG6	93	49.550	ENSGACG00000020521	smg6	100	49.701	Gasterosteus_aculeatus
ENSXETG00000023799	SMG6	99	57.987	ENSGAGG00000025617	SMG6	100	57.703	Gopherus_agassizii
ENSXETG00000023799	SMG6	100	59.187	ENSGGOG00000017156	SMG6	98	59.619	Gorilla_gorilla
ENSXETG00000023799	SMG6	85	50.994	ENSHBUG00000021311	smg6	66	55.596	Haplochromis_burtoni
ENSXETG00000023799	SMG6	100	58.708	ENSHGLG00000012882	SMG6	98	58.761	Heterocephalus_glaber_female
ENSXETG00000023799	SMG6	100	58.848	ENSHGLG00100017815	SMG6	98	58.902	Heterocephalus_glaber_male
ENSXETG00000023799	SMG6	69	54.481	ENSHCOG00000008761	smg6	83	53.846	Hippocampus_comes
ENSXETG00000023799	SMG6	88	49.808	ENSIPUG00000012493	smg6	66	55.842	Ictalurus_punctatus
ENSXETG00000023799	SMG6	100	59.257	ENSSTOG00000028127	SMG6	98	59.690	Ictidomys_tridecemlineatus
ENSXETG00000023799	SMG6	78	54.651	ENSJJAG00000015367	Smg6	92	53.718	Jaculus_jaculus
ENSXETG00000023799	SMG6	74	54.397	ENSKMAG00000000279	smg6	66	54.570	Kryptolebias_marmoratus
ENSXETG00000023799	SMG6	73	55.027	ENSLBEG00000002184	smg6	64	54.895	Labrus_bergylta
ENSXETG00000023799	SMG6	57	55.322	ENSLACG00000000806	-	98	55.514	Latimeria_chalumnae
ENSXETG00000023799	SMG6	75	60.189	ENSLOCG00000006448	smg6	86	57.533	Lepisosteus_oculatus
ENSXETG00000023799	SMG6	100	58.655	ENSLAFG00000001261	SMG6	98	58.873	Loxodonta_africana
ENSXETG00000023799	SMG6	100	58.956	ENSMFAG00000003394	SMG6	98	59.168	Macaca_fascicularis
ENSXETG00000023799	SMG6	100	59.126	ENSMMUG00000023161	SMG6	98	59.168	Macaca_mulatta
ENSXETG00000023799	SMG6	100	57.561	ENSMNEG00000044592	SMG6	98	57.703	Macaca_nemestrina
ENSXETG00000023799	SMG6	99	58.196	ENSMLEG00000029353	SMG6	100	58.411	Mandrillus_leucophaeus
ENSXETG00000023799	SMG6	85	50.866	ENSMAMG00000020119	smg6	70	54.977	Mastacembelus_armatus
ENSXETG00000023799	SMG6	85	50.881	ENSMZEG00005024736	smg6	66	55.596	Maylandia_zebra
ENSXETG00000023799	SMG6	73	56.004	ENSMGAG00000005401	-	97	56.065	Meleagris_gallopavo
ENSXETG00000023799	SMG6	100	59.437	ENSMICG00000012913	SMG6	98	59.718	Microcebus_murinus
ENSXETG00000023799	SMG6	87	50.892	ENSMMOG00000010883	smg6	69	54.977	Mola_mola
ENSXETG00000023799	SMG6	100	59.660	ENSMODG00000010622	SMG6	98	58.953	Monodelphis_domestica
ENSXETG00000023799	SMG6	89	49.734	ENSMALG00000001106	smg6	82	48.323	Monopterus_albus
ENSXETG00000023799	SMG6	100	59.088	MGP_CAROLIEiJ_G0016729	Smg6	98	68.876	Mus_caroli
ENSXETG00000023799	SMG6	100	59.351	ENSMUSG00000038290	Smg6	97	69.164	Mus_musculus
ENSXETG00000023799	SMG6	100	58.985	MGP_PahariEiJ_G0017866	Smg6	98	68.300	Mus_pahari
ENSXETG00000023799	SMG6	100	59.520	MGP_SPRETEiJ_G0017572	Smg6	98	69.164	Mus_spretus
ENSXETG00000023799	SMG6	99	58.873	ENSMPUG00000013046	SMG6	98	59.056	Mustela_putorius_furo
ENSXETG00000023799	SMG6	99	59.165	ENSMLUG00000005739	SMG6	98	59.688	Myotis_lucifugus
ENSXETG00000023799	SMG6	99	59.027	ENSNGAG00000007287	Smg6	100	59.437	Nannospalax_galili
ENSXETG00000023799	SMG6	85	50.594	ENSNBRG00000009511	smg6	71	54.932	Neolamprologus_brichardi
ENSXETG00000023799	SMG6	99	58.989	ENSNLEG00000017171	SMG6	100	69.052	Nomascus_leucogenys
ENSXETG00000023799	SMG6	99	59.094	ENSMEUG00000015804	SMG6	100	58.592	Notamacropus_eugenii
ENSXETG00000023799	SMG6	57	69.192	ENSOPRG00000000579	SMG6	81	69.192	Ochotona_princeps
ENSXETG00000023799	SMG6	100	53.513	ENSODEG00000008038	SMG6	98	53.693	Octodon_degus
ENSXETG00000023799	SMG6	93	50.298	ENSONIG00000005594	smg6	91	50.037	Oreochromis_niloticus
ENSXETG00000023799	SMG6	100	58.832	ENSOCUG00000013018	SMG6	98	59.113	Oryctolagus_cuniculus
ENSXETG00000023799	SMG6	74	52.669	ENSORLG00000003317	smg6	66	53.226	Oryzias_latipes
ENSXETG00000023799	SMG6	74	52.697	ENSORLG00020015343	smg6	66	53.517	Oryzias_latipes_hni
ENSXETG00000023799	SMG6	74	52.810	ENSORLG00015020454	smg6	66	53.369	Oryzias_latipes_hsok
ENSXETG00000023799	SMG6	74	53.632	ENSOMEG00000010838	smg6	67	53.501	Oryzias_melastigma
ENSXETG00000023799	SMG6	100	59.139	ENSOGAG00000004483	SMG6	98	59.421	Otolemur_garnettii
ENSXETG00000023799	SMG6	99	59.362	ENSOARG00000015076	SMG6	100	59.517	Ovis_aries
ENSXETG00000023799	SMG6	100	59.187	ENSPPAG00000043296	SMG6	98	59.619	Pan_paniscus
ENSXETG00000023799	SMG6	99	59.760	ENSPPRG00000014581	SMG6	98	59.944	Panthera_pardus
ENSXETG00000023799	SMG6	99	59.859	ENSPTIG00000008925	SMG6	100	68.919	Panthera_tigris_altaica
ENSXETG00000023799	SMG6	100	59.187	ENSPTRG00000008544	SMG6	100	69.052	Pan_troglodytes
ENSXETG00000023799	SMG6	100	59.116	ENSPANG00000024588	SMG6	98	59.197	Papio_anubis
ENSXETG00000023799	SMG6	90	55.104	ENSPSIG00000006660	SMG6	96	55.427	Pelodiscus_sinensis
ENSXETG00000023799	SMG6	86	50.877	ENSPMGG00000000844	smg6	77	53.626	Periophthalmus_magnuspinnatus
ENSXETG00000023799	SMG6	100	59.338	ENSPEMG00000020707	Smg6	98	59.915	Peromyscus_maniculatus_bairdii
ENSXETG00000023799	SMG6	99	47.442	ENSPFOG00000012035	smg6	96	47.539	Poecilia_formosa
ENSXETG00000023799	SMG6	75	53.543	ENSPLAG00000017660	smg6	67	54.000	Poecilia_latipinna
ENSXETG00000023799	SMG6	75	54.018	ENSPMEG00000000258	smg6	67	54.091	Poecilia_mexicana
ENSXETG00000023799	SMG6	75	53.860	ENSPREG00000010066	smg6	66	54.579	Poecilia_reticulata
ENSXETG00000023799	SMG6	100	56.783	ENSPPYG00000007790	SMG6	98	57.063	Pongo_abelii
ENSXETG00000023799	SMG6	96	68.689	ENSPCAG00000000552	SMG6	98	56.912	Procavia_capensis
ENSXETG00000023799	SMG6	100	59.034	ENSPCOG00000020925	SMG6	98	59.324	Propithecus_coquereli
ENSXETG00000023799	SMG6	81	70.241	ENSPVAG00000002159	SMG6	79	70.241	Pteropus_vampyrus
ENSXETG00000023799	SMG6	85	52.124	ENSPNYG00000024151	smg6	70	56.326	Pundamilia_nyererei
ENSXETG00000023799	SMG6	85	49.839	ENSPNAG00000015480	smg6	68	53.688	Pygocentrus_nattereri
ENSXETG00000023799	SMG6	100	59.171	ENSRNOG00000003041	Smg6	97	68.588	Rattus_norvegicus
ENSXETG00000023799	SMG6	100	59.366	ENSRBIG00000024746	SMG6	98	59.577	Rhinopithecus_bieti
ENSXETG00000023799	SMG6	100	59.296	ENSRROG00000030423	SMG6	100	68.665	Rhinopithecus_roxellana
ENSXETG00000023799	SMG6	100	58.906	ENSSBOG00000022518	SMG6	98	57.787	Saimiri_boliviensis_boliviensis
ENSXETG00000023799	SMG6	100	60.141	ENSSHAG00000010045	SMG6	98	59.410	Sarcophilus_harrisii
ENSXETG00000023799	SMG6	74	58.172	ENSSFOG00015005436	smg6	73	52.091	Scleropages_formosus
ENSXETG00000023799	SMG6	95	47.416	ENSSMAG00000019777	smg6	65	54.095	Scophthalmus_maximus
ENSXETG00000023799	SMG6	87	50.851	ENSSDUG00000016412	smg6	82	48.696	Seriola_dumerili
ENSXETG00000023799	SMG6	84	49.799	ENSSLDG00000020747	smg6	86	47.595	Seriola_lalandi_dorsalis
ENSXETG00000023799	SMG6	99	57.173	ENSSPUG00000007152	SMG6	98	56.879	Sphenodon_punctatus
ENSXETG00000023799	SMG6	73	53.769	ENSSPAG00000015633	smg6	66	54.201	Stegastes_partitus
ENSXETG00000023799	SMG6	99	59.972	ENSSSCG00000017826	SMG6	98	60.113	Sus_scrofa
ENSXETG00000023799	SMG6	100	57.736	ENSTGUG00000005836	SMG6	98	57.746	Taeniopygia_guttata
ENSXETG00000023799	SMG6	99	46.353	ENSTRUG00000000358	smg6	72	54.396	Takifugu_rubripes
ENSXETG00000023799	SMG6	99	46.295	ENSTNIG00000016164	smg6	98	46.333	Tetraodon_nigroviridis
ENSXETG00000023799	SMG6	96	67.018	ENSTBEG00000011424	SMG6	94	67.810	Tupaia_belangeri
ENSXETG00000023799	SMG6	90	64.414	ENSTTRG00000001175	SMG6	89	64.414	Tursiops_truncatus
ENSXETG00000023799	SMG6	99	59.152	ENSUAMG00000025152	SMG6	100	59.364	Ursus_americanus
ENSXETG00000023799	SMG6	99	59.406	ENSUMAG00000009306	SMG6	100	59.448	Ursus_maritimus
ENSXETG00000023799	SMG6	84	81.481	ENSVPAG00000000225	SMG6	86	81.481	Vicugna_pacos
ENSXETG00000023799	SMG6	99	59.685	ENSVVUG00000021727	SMG6	99	59.514	Vulpes_vulpes
ENSXETG00000023799	SMG6	76	52.972	ENSXMAG00000010321	smg6	66	54.380	Xiphophorus_maculatus