EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000023828 (Gene tree)
Gene ID: -
Gene Symbol: trub1
Alias: -
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 9586 bases
Position: chrGL173341.1:538976-548561
Accession: XB-GENE-1008962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000051364	TruB_N	PF01509.18	2.4e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000051364	-	1366	-	ENSXETP00000051364	275 (aa)	XP_002941103	F7E5E4

Gene Model

Click here to download ENSXETG00000023828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000023828's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000023828	trub1	97	66.418	ENSG00000165832	TRUB1	77	66.418	Homo_sapiens
ENSXETG00000023828	trub1	87	69.835	ENSAPOG00000020565	trub1	89	69.388	Acanthochromis_polyacanthus
ENSXETG00000023828	trub1	98	66.788	ENSAMEG00000014931	TRUB1	78	66.788	Ailuropoda_melanoleuca
ENSXETG00000023828	trub1	88	63.265	ENSACIG00000003060	trub1	82	63.265	Amphilophus_citrinellus
ENSXETG00000023828	trub1	87	69.835	ENSAOCG00000017188	trub1	93	67.704	Amphiprion_ocellaris
ENSXETG00000023828	trub1	88	68.980	ENSAPEG00000015209	trub1	93	67.315	Amphiprion_percula
ENSXETG00000023828	trub1	87	70.370	ENSATEG00000023291	trub1	86	70.370	Anabas_testudineus
ENSXETG00000023828	trub1	100	65.580	ENSAPLG00000006808	TRUB1	99	65.580	Anas_platyrhynchos
ENSXETG00000023828	trub1	95	65.134	ENSACAG00000009282	TRUB1	95	65.134	Anolis_carolinensis
ENSXETG00000023828	trub1	98	66.176	ENSANAG00000022870	TRUB1	77	66.176	Aotus_nancymaae
ENSXETG00000023828	trub1	88	67.755	ENSACLG00000000823	trub1	88	67.755	Astatotilapia_calliptera
ENSXETG00000023828	trub1	94	66.667	ENSAMXG00000015845	trub1	87	66.667	Astyanax_mexicanus
ENSXETG00000023828	trub1	98	66.912	ENSBTAG00000012955	TRUB1	77	66.912	Bos_taurus
ENSXETG00000023828	trub1	98	66.176	ENSCJAG00000047815	TRUB1	77	66.176	Callithrix_jacchus
ENSXETG00000023828	trub1	98	66.912	ENSCAFG00000011688	TRUB1	78	66.912	Canis_familiaris
ENSXETG00000023828	trub1	98	66.912	ENSCAFG00020013237	TRUB1	78	66.912	Canis_lupus_dingo
ENSXETG00000023828	trub1	98	66.544	ENSCHIG00000020884	TRUB1	81	66.544	Capra_hircus
ENSXETG00000023828	trub1	98	66.176	ENSTSYG00000000446	TRUB1	77	66.176	Carlito_syrichta
ENSXETG00000023828	trub1	82	62.222	ENSCAPG00000017088	TRUB1	88	62.222	Cavia_aperea
ENSXETG00000023828	trub1	67	68.984	ENSCPOG00000030129	-	73	68.984	Cavia_porcellus
ENSXETG00000023828	trub1	66	69.022	ENSCPOG00000040236	-	75	69.022	Cavia_porcellus
ENSXETG00000023828	trub1	98	66.176	ENSCCAG00000028842	TRUB1	77	66.176	Cebus_capucinus
ENSXETG00000023828	trub1	98	66.176	ENSCATG00000033431	TRUB1	78	66.176	Cercocebus_atys
ENSXETG00000023828	trub1	66	68.478	ENSCLAG00000008664	TRUB1	75	68.478	Chinchilla_lanigera
ENSXETG00000023828	trub1	98	66.176	ENSCSAG00000004891	TRUB1	78	66.176	Chlorocebus_sabaeus
ENSXETG00000023828	trub1	88	61.885	ENSCHOG00000011931	TRUB1	70	61.885	Choloepus_hoffmanni
ENSXETG00000023828	trub1	100	67.391	ENSCPBG00000003051	TRUB1	96	67.391	Chrysemys_picta_bellii
ENSXETG00000023828	trub1	98	66.176	ENSCANG00000029445	TRUB1	78	66.176	Colobus_angolensis_palliatus
ENSXETG00000023828	trub1	86	65.126	ENSCGRG00001016772	-	80	65.000	Cricetulus_griseus_chok1gshd
ENSXETG00000023828	trub1	95	58.712	ENSCGRG00001010322	-	73	58.824	Cricetulus_griseus_chok1gshd
ENSXETG00000023828	trub1	95	64.394	ENSCGRG00000010806	Trub1	83	64.338	Cricetulus_griseus_crigri
ENSXETG00000023828	trub1	87	66.116	ENSCSEG00000011261	trub1	78	66.116	Cynoglossus_semilaevis
ENSXETG00000023828	trub1	93	65.267	ENSCVAG00000008791	trub1	80	65.267	Cyprinodon_variegatus
ENSXETG00000023828	trub1	99	65.125	ENSDARG00000053805	trub1	99	76.471	Danio_rerio
ENSXETG00000023828	trub1	98	65.809	ENSDNOG00000001069	TRUB1	78	65.809	Dasypus_novemcinctus
ENSXETG00000023828	trub1	95	66.288	ENSDORG00000010431	Trub1	79	66.176	Dipodomys_ordii
ENSXETG00000023828	trub1	72	66.429	ENSETEG00000009183	TRUB1	56	66.429	Echinops_telfairi
ENSXETG00000023828	trub1	98	67.279	ENSEASG00005014739	TRUB1	78	67.279	Equus_asinus_asinus
ENSXETG00000023828	trub1	98	67.279	ENSECAG00000007177	TRUB1	78	67.279	Equus_caballus
ENSXETG00000023828	trub1	98	58.088	ENSEEUG00000013993	TRUB1	76	58.088	Erinaceus_europaeus
ENSXETG00000023828	trub1	88	71.837	ENSELUG00000000502	trub1	86	71.837	Esox_lucius
ENSXETG00000023828	trub1	98	67.279	ENSFCAG00000031927	TRUB1	78	67.279	Felis_catus
ENSXETG00000023828	trub1	85	68.803	ENSFALG00000002232	TRUB1	91	68.803	Ficedula_albicollis
ENSXETG00000023828	trub1	66	69.565	ENSFDAG00000008140	TRUB1	75	69.565	Fukomys_damarensis
ENSXETG00000023828	trub1	89	67.480	ENSFHEG00000004016	trub1	85	67.480	Fundulus_heteroclitus
ENSXETG00000023828	trub1	100	65.942	ENSGALG00000009091	TRUB1	98	65.942	Gallus_gallus
ENSXETG00000023828	trub1	88	65.574	ENSGAFG00000009193	trub1	86	65.574	Gambusia_affinis
ENSXETG00000023828	trub1	70	71.354	ENSGACG00000015387	trub1	94	71.354	Gasterosteus_aculeatus
ENSXETG00000023828	trub1	100	68.478	ENSGAGG00000009758	TRUB1	76	69.549	Gopherus_agassizii
ENSXETG00000023828	trub1	97	66.418	ENSGGOG00000004583	TRUB1	77	66.418	Gorilla_gorilla
ENSXETG00000023828	trub1	88	67.755	ENSHBUG00000016787	trub1	88	67.755	Haplochromis_burtoni
ENSXETG00000023828	trub1	96	64.662	ENSHGLG00000015314	TRUB1	76	64.662	Heterocephalus_glaber_female
ENSXETG00000023828	trub1	66	68.478	ENSHGLG00100009183	TRUB1	78	68.478	Heterocephalus_glaber_male
ENSXETG00000023828	trub1	88	67.347	ENSHCOG00000017877	trub1	89	67.347	Hippocampus_comes
ENSXETG00000023828	trub1	98	63.469	ENSIPUG00000017559	trub1	95	63.469	Ictalurus_punctatus
ENSXETG00000023828	trub1	98	64.706	ENSSTOG00000003641	TRUB1	81	64.706	Ictidomys_tridecemlineatus
ENSXETG00000023828	trub1	95	67.045	ENSJJAG00000011800	Trub1	78	67.045	Jaculus_jaculus
ENSXETG00000023828	trub1	88	68.163	ENSKMAG00000006232	trub1	88	68.163	Kryptolebias_marmoratus
ENSXETG00000023828	trub1	95	65.019	ENSLBEG00000026722	trub1	91	65.019	Labrus_bergylta
ENSXETG00000023828	trub1	97	68.284	ENSLACG00000014885	TRUB1	90	68.284	Latimeria_chalumnae
ENSXETG00000023828	trub1	95	70.498	ENSLOCG00000012979	trub1	89	70.498	Lepisosteus_oculatus
ENSXETG00000023828	trub1	92	68.235	ENSLAFG00000015452	TRUB1	75	67.557	Loxodonta_africana
ENSXETG00000023828	trub1	98	66.176	ENSMFAG00000031767	TRUB1	78	66.176	Macaca_fascicularis
ENSXETG00000023828	trub1	98	66.176	ENSMMUG00000001902	TRUB1	78	66.176	Macaca_mulatta
ENSXETG00000023828	trub1	98	61.397	ENSMNEG00000044646	TRUB1	77	61.397	Macaca_nemestrina
ENSXETG00000023828	trub1	98	66.176	ENSMLEG00000042655	TRUB1	78	66.176	Mandrillus_leucophaeus
ENSXETG00000023828	trub1	88	67.755	ENSMZEG00005024095	trub1	88	67.755	Maylandia_zebra
ENSXETG00000023828	trub1	100	64.855	ENSMGAG00000011135	TRUB1	95	64.855	Meleagris_gallopavo
ENSXETG00000023828	trub1	95	63.258	ENSMAUG00000011101	Trub1	80	63.235	Mesocricetus_auratus
ENSXETG00000023828	trub1	98	66.544	ENSMICG00000016324	TRUB1	78	66.544	Microcebus_murinus
ENSXETG00000023828	trub1	95	65.909	ENSMOCG00000017759	Trub1	82	65.809	Microtus_ochrogaster
ENSXETG00000023828	trub1	97	66.667	ENSMODG00000009676	TRUB1	73	67.547	Monodelphis_domestica
ENSXETG00000023828	trub1	96	65.414	MGP_CAROLIEiJ_G0023100	Trub1	80	65.185	Mus_caroli
ENSXETG00000023828	trub1	96	65.414	ENSMUSG00000025086	Trub1	80	65.185	Mus_musculus
ENSXETG00000023828	trub1	98	64.338	MGP_PahariEiJ_G0014588	Trub1	80	64.338	Mus_pahari
ENSXETG00000023828	trub1	96	64.662	MGP_SPRETEiJ_G0024021	Trub1	80	64.444	Mus_spretus
ENSXETG00000023828	trub1	98	66.912	ENSMPUG00000003556	TRUB1	78	66.912	Mustela_putorius_furo
ENSXETG00000023828	trub1	95	67.424	ENSMLUG00000017686	TRUB1	78	67.424	Myotis_lucifugus
ENSXETG00000023828	trub1	98	66.176	ENSNGAG00000018682	Trub1	78	66.176	Nannospalax_galili
ENSXETG00000023828	trub1	88	67.755	ENSNBRG00000023393	trub1	88	67.755	Neolamprologus_brichardi
ENSXETG00000023828	trub1	97	66.418	ENSNLEG00000016345	TRUB1	77	66.418	Nomascus_leucogenys
ENSXETG00000023828	trub1	72	71.144	ENSMEUG00000006603	TRUB1	76	70.588	Notamacropus_eugenii
ENSXETG00000023828	trub1	98	64.207	ENSOPRG00000009371	TRUB1	79	64.207	Ochotona_princeps
ENSXETG00000023828	trub1	96	66.038	ENSODEG00000010854	TRUB1	76	66.038	Octodon_degus
ENSXETG00000023828	trub1	88	67.347	ENSONIG00000007249	trub1	89	67.347	Oreochromis_niloticus
ENSXETG00000023828	trub1	99	66.788	ENSOANG00000001556	TRUB1	90	66.788	Ornithorhynchus_anatinus
ENSXETG00000023828	trub1	97	65.926	ENSOCUG00000009456	TRUB1	77	66.045	Oryctolagus_cuniculus
ENSXETG00000023828	trub1	88	68.724	ENSORLG00000029719	trub1	88	68.571	Oryzias_latipes
ENSXETG00000023828	trub1	88	68.724	ENSORLG00020016767	trub1	87	68.571	Oryzias_latipes_hni
ENSXETG00000023828	trub1	88	69.136	ENSORLG00015014728	trub1	88	68.980	Oryzias_latipes_hsok
ENSXETG00000023828	trub1	88	68.571	ENSOMEG00000014556	trub1	86	68.571	Oryzias_melastigma
ENSXETG00000023828	trub1	98	66.544	ENSOGAG00000015895	TRUB1	78	66.544	Otolemur_garnettii
ENSXETG00000023828	trub1	98	65.233	ENSOARG00000015591	TRUB1	79	65.233	Ovis_aries
ENSXETG00000023828	trub1	97	66.418	ENSPPAG00000043645	TRUB1	77	66.418	Pan_paniscus
ENSXETG00000023828	trub1	98	67.279	ENSPPRG00000007096	TRUB1	78	67.279	Panthera_pardus
ENSXETG00000023828	trub1	98	67.279	ENSPTIG00000006378	TRUB1	78	67.279	Panthera_tigris_altaica
ENSXETG00000023828	trub1	97	66.418	ENSPTRG00000002964	TRUB1	77	66.418	Pan_troglodytes
ENSXETG00000023828	trub1	98	66.176	ENSPANG00000020712	TRUB1	78	66.176	Papio_anubis
ENSXETG00000023828	trub1	64	69.886	ENSPKIG00000003852	trub1	75	69.886	Paramormyrops_kingsleyae
ENSXETG00000023828	trub1	98	67.897	ENSPSIG00000012877	TRUB1	93	67.897	Pelodiscus_sinensis
ENSXETG00000023828	trub1	90	65.462	ENSPMGG00000000075	trub1	90	65.462	Periophthalmus_magnuspinnatus
ENSXETG00000023828	trub1	98	63.235	ENSPEMG00000011156	Trub1	80	63.235	Peromyscus_maniculatus_bairdii
ENSXETG00000023828	trub1	97	66.667	ENSPCIG00000009729	TRUB1	74	66.300	Phascolarctos_cinereus
ENSXETG00000023828	trub1	88	68.163	ENSPFOG00000009950	trub1	90	68.163	Poecilia_formosa
ENSXETG00000023828	trub1	88	68.163	ENSPLAG00000013855	trub1	86	68.163	Poecilia_latipinna
ENSXETG00000023828	trub1	88	68.163	ENSPMEG00000009064	trub1	88	68.163	Poecilia_mexicana
ENSXETG00000023828	trub1	88	68.571	ENSPREG00000003343	trub1	88	68.571	Poecilia_reticulata
ENSXETG00000023828	trub1	97	66.045	ENSPPYG00000002676	TRUB1	77	66.045	Pongo_abelii
ENSXETG00000023828	trub1	99	58.484	ENSPCAG00000008427	TRUB1	78	58.696	Procavia_capensis
ENSXETG00000023828	trub1	98	61.765	ENSPCOG00000024360	TRUB1	77	61.765	Propithecus_coquereli
ENSXETG00000023828	trub1	73	70.936	ENSPVAG00000007575	TRUB1	77	70.936	Pteropus_vampyrus
ENSXETG00000023828	trub1	88	67.755	ENSPNYG00000018614	trub1	88	67.755	Pundamilia_nyererei
ENSXETG00000023828	trub1	87	60.417	ENSPNAG00000006881	trub1	78	60.417	Pygocentrus_nattereri
ENSXETG00000023828	trub1	98	63.971	ENSRNOG00000017321	Trub1	80	63.971	Rattus_norvegicus
ENSXETG00000023828	trub1	98	56.985	ENSRBIG00000033423	TRUB1	76	56.985	Rhinopithecus_bieti
ENSXETG00000023828	trub1	98	66.176	ENSRROG00000033902	TRUB1	78	66.176	Rhinopithecus_roxellana
ENSXETG00000023828	trub1	63	34.146	YNL292W	-	51	34.146	Saccharomyces_cerevisiae
ENSXETG00000023828	trub1	98	66.176	ENSSBOG00000024237	TRUB1	77	66.176	Saimiri_boliviensis_boliviensis
ENSXETG00000023828	trub1	86	66.390	ENSSHAG00000009346	TRUB1	81	66.390	Sarcophilus_harrisii
ENSXETG00000023828	trub1	92	69.412	ENSSFOG00015022124	trub1	86	69.412	Scleropages_formosus
ENSXETG00000023828	trub1	96	65.038	ENSSMAG00000001020	trub1	93	65.038	Scophthalmus_maximus
ENSXETG00000023828	trub1	85	68.354	ENSSDUG00000016414	trub1	88	67.347	Seriola_dumerili
ENSXETG00000023828	trub1	85	68.776	ENSSLDG00000015486	trub1	88	67.755	Seriola_lalandi_dorsalis
ENSXETG00000023828	trub1	99	68.000	ENSSPUG00000001642	TRUB1	95	68.000	Sphenodon_punctatus
ENSXETG00000023828	trub1	88	68.163	ENSSPAG00000001217	trub1	88	68.163	Stegastes_partitus
ENSXETG00000023828	trub1	98	65.441	ENSSSCG00000010653	TRUB1	78	65.672	Sus_scrofa
ENSXETG00000023828	trub1	96	69.582	ENSTGUG00000010971	TRUB1	96	69.030	Taeniopygia_guttata
ENSXETG00000023828	trub1	83	58.150	ENSTBEG00000002880	TRUB1	89	58.150	Tupaia_belangeri
ENSXETG00000023828	trub1	73	70.443	ENSTTRG00000005767	TRUB1	77	70.443	Tursiops_truncatus
ENSXETG00000023828	trub1	98	66.912	ENSUAMG00000024876	TRUB1	78	66.912	Ursus_americanus
ENSXETG00000023828	trub1	98	66.912	ENSUMAG00000002411	TRUB1	81	66.912	Ursus_maritimus
ENSXETG00000023828	trub1	98	66.176	ENSVPAG00000005507	TRUB1	78	66.176	Vicugna_pacos
ENSXETG00000023828	trub1	98	66.912	ENSVVUG00000010085	TRUB1	66	66.912	Vulpes_vulpes
ENSXETG00000023828	trub1	98	61.397	ENSXCOG00000017847	trub1	92	61.397	Xiphophorus_couchianus
ENSXETG00000023828	trub1	88	66.939	ENSXMAG00000014701	trub1	88	66.939	Xiphophorus_maculatus