EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000024077 (Gene tree)
Gene ID: -
Gene Symbol: lsm2
Alias: -
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 2593 bases
Position: chrGL173124.1:451318-453910
Accession: XB-GENE-483861
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000051947	LSM	PF01423.22	4.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000051947	-	635	-	ENSXETP00000051947	95 (aa)	-	Q5BL46

Gene Model

Click here to download ENSXETG00000024077's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000024077's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000024077	lsm2	100	31.000	ENSXETG00000024933	lsm4	70	31.000
ENSXETG00000024077	lsm2	77	32.877	ENSXETG00000027631	lsm10	58	32.877

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000024077	lsm2	100	98.947	ENSG00000204392	LSM2	100	98.947	Homo_sapiens
ENSXETG00000024077	lsm2	100	98.947	ENSAPOG00000017967	si:ch73-14h10.2	100	98.947	Acanthochromis_polyacanthus
ENSXETG00000024077	lsm2	99	98.936	ENSAMEG00000006483	LSM2	100	98.936	Ailuropoda_melanoleuca
ENSXETG00000024077	lsm2	99	98.936	ENSACIG00000007795	si:ch73-14h10.2	62	98.936	Amphilophus_citrinellus
ENSXETG00000024077	lsm2	99	98.936	ENSAOCG00000006949	si:ch73-14h10.2	78	98.936	Amphiprion_ocellaris
ENSXETG00000024077	lsm2	99	98.936	ENSAPEG00000020375	si:ch73-14h10.2	87	98.936	Amphiprion_percula
ENSXETG00000024077	lsm2	100	98.947	ENSATEG00000011376	si:ch73-14h10.2	100	98.947	Anabas_testudineus
ENSXETG00000024077	lsm2	99	98.936	ENSACAG00000017281	LSM2	90	98.936	Anolis_carolinensis
ENSXETG00000024077	lsm2	100	98.947	ENSANAG00000028372	LSM2	100	98.947	Aotus_nancymaae
ENSXETG00000024077	lsm2	96	80.220	ENSANAG00000028033	-	96	80.220	Aotus_nancymaae
ENSXETG00000024077	lsm2	100	98.947	ENSACLG00000024717	smx5	100	98.947	Astatotilapia_calliptera
ENSXETG00000024077	lsm2	100	98.947	ENSAMXG00000036868	si:ch73-14h10.2	100	98.947	Astyanax_mexicanus
ENSXETG00000024077	lsm2	100	98.947	ENSBTAG00000005634	LSM2	100	98.947	Bos_taurus
ENSXETG00000024077	lsm2	99	82.979	WBGene00001808	gut-2	97	82.979	Caenorhabditis_elegans
ENSXETG00000024077	lsm2	100	98.947	ENSCJAG00000040899	LSM2	100	98.947	Callithrix_jacchus
ENSXETG00000024077	lsm2	75	97.183	ENSCAFG00020016978	-	88	97.183	Canis_lupus_dingo
ENSXETG00000024077	lsm2	99	98.936	ENSCHIG00000016153	LSM2	100	98.936	Capra_hircus
ENSXETG00000024077	lsm2	99	89.362	ENSTSYG00000030015	-	100	89.362	Carlito_syrichta
ENSXETG00000024077	lsm2	100	98.947	ENSTSYG00000034844	LSM2	100	98.947	Carlito_syrichta
ENSXETG00000024077	lsm2	76	98.611	ENSCAPG00000009970	LSM2	92	98.611	Cavia_aperea
ENSXETG00000024077	lsm2	100	98.947	ENSCPOG00000021053	LSM2	100	98.947	Cavia_porcellus
ENSXETG00000024077	lsm2	100	98.947	ENSCCAG00000024276	LSM2	100	98.947	Cebus_capucinus
ENSXETG00000024077	lsm2	100	98.947	ENSCATG00000013737	LSM2	100	98.947	Cercocebus_atys
ENSXETG00000024077	lsm2	100	98.947	ENSCLAG00000008081	LSM2	100	98.947	Chinchilla_lanigera
ENSXETG00000024077	lsm2	100	98.947	ENSCSAG00000008800	LSM2	100	98.947	Chlorocebus_sabaeus
ENSXETG00000024077	lsm2	100	98.947	ENSCHOG00000007702	LSM2	100	98.947	Choloepus_hoffmanni
ENSXETG00000024077	lsm2	100	96.842	ENSCING00000022677	-	100	96.842	Ciona_intestinalis
ENSXETG00000024077	lsm2	100	98.947	ENSCANG00000039576	LSM2	100	98.947	Colobus_angolensis_palliatus
ENSXETG00000024077	lsm2	100	98.947	ENSCGRG00001013932	Lsm2	100	98.947	Cricetulus_griseus_chok1gshd
ENSXETG00000024077	lsm2	76	98.611	ENSCGRG00000013311	Lsm2	62	98.611	Cricetulus_griseus_crigri
ENSXETG00000024077	lsm2	100	98.947	ENSCSEG00000002911	si:ch73-14h10.2	100	98.947	Cynoglossus_semilaevis
ENSXETG00000024077	lsm2	99	98.936	ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	Cyprinodon_variegatus
ENSXETG00000024077	lsm2	100	98.947	ENSDARG00000070867	smx5	100	98.947	Danio_rerio
ENSXETG00000024077	lsm2	99	98.936	ENSDNOG00000002633	LSM2	100	98.936	Dasypus_novemcinctus
ENSXETG00000024077	lsm2	100	98.947	ENSDORG00000026571	Lsm2	100	98.947	Dipodomys_ordii
ENSXETG00000024077	lsm2	96	96.703	FBgn0036277	CG10418	96	96.703	Drosophila_melanogaster
ENSXETG00000024077	lsm2	99	98.936	ENSEASG00005015670	LSM2	79	98.936	Equus_asinus_asinus
ENSXETG00000024077	lsm2	99	98.936	ENSECAG00000018791	LSM2	79	98.936	Equus_caballus
ENSXETG00000024077	lsm2	100	98.947	ENSELUG00000008241	smx5	100	98.947	Esox_lucius
ENSXETG00000024077	lsm2	100	98.947	ENSFCAG00000045887	LSM2	100	98.947	Felis_catus
ENSXETG00000024077	lsm2	100	98.947	ENSFDAG00000000390	LSM2	100	98.947	Fukomys_damarensis
ENSXETG00000024077	lsm2	99	95.833	ENSFHEG00000009619	si:ch73-14h10.2	100	95.833	Fundulus_heteroclitus
ENSXETG00000024077	lsm2	99	98.936	ENSGMOG00000019208	si:ch73-14h10.2	100	98.936	Gadus_morhua
ENSXETG00000024077	lsm2	100	98.947	ENSGAFG00000017286	si:ch73-14h10.2	100	98.947	Gambusia_affinis
ENSXETG00000024077	lsm2	100	98.947	ENSGACG00000003827	si:ch73-14h10.2	100	98.947	Gasterosteus_aculeatus
ENSXETG00000024077	lsm2	100	98.947	ENSGAGG00000012458	LSM2	100	98.947	Gopherus_agassizii
ENSXETG00000024077	lsm2	100	98.947	ENSGGOG00000011383	LSM2	100	98.947	Gorilla_gorilla
ENSXETG00000024077	lsm2	100	98.947	ENSHGLG00000011299	LSM2	100	98.947	Heterocephalus_glaber_female
ENSXETG00000024077	lsm2	100	98.947	ENSHGLG00100017194	LSM2	100	98.947	Heterocephalus_glaber_male
ENSXETG00000024077	lsm2	100	98.947	ENSHCOG00000014057	si:ch73-14h10.2	100	98.947	Hippocampus_comes
ENSXETG00000024077	lsm2	100	98.947	ENSIPUG00000010539	lsm2	100	98.947	Ictalurus_punctatus
ENSXETG00000024077	lsm2	100	98.947	ENSSTOG00000013144	LSM2	100	98.947	Ictidomys_tridecemlineatus
ENSXETG00000024077	lsm2	94	76.404	ENSJJAG00000019477	-	100	76.404	Jaculus_jaculus
ENSXETG00000024077	lsm2	100	98.947	ENSKMAG00000014909	si:ch73-14h10.2	100	98.947	Kryptolebias_marmoratus
ENSXETG00000024077	lsm2	99	97.872	ENSLBEG00000025781	si:ch73-14h10.2	98	97.872	Labrus_bergylta
ENSXETG00000024077	lsm2	100	98.947	ENSLACG00000015064	LSM2	100	98.947	Latimeria_chalumnae
ENSXETG00000024077	lsm2	100	98.947	ENSLOCG00000005228	si:ch73-14h10.2	100	98.947	Lepisosteus_oculatus
ENSXETG00000024077	lsm2	99	98.936	ENSLAFG00000016139	LSM2	100	98.936	Loxodonta_africana
ENSXETG00000024077	lsm2	100	98.947	ENSMFAG00000001016	LSM2	100	98.947	Macaca_fascicularis
ENSXETG00000024077	lsm2	99	80.851	ENSMMUG00000045473	-	97	80.851	Macaca_mulatta
ENSXETG00000024077	lsm2	100	98.947	ENSMMUG00000006832	LSM2	100	98.947	Macaca_mulatta
ENSXETG00000024077	lsm2	100	98.947	ENSMNEG00000045355	LSM2	100	98.947	Macaca_nemestrina
ENSXETG00000024077	lsm2	79	84.000	ENSMNEG00000040973	-	91	84.000	Macaca_nemestrina
ENSXETG00000024077	lsm2	100	98.947	ENSMLEG00000037369	-	100	98.947	Mandrillus_leucophaeus
ENSXETG00000024077	lsm2	99	79.787	ENSMLEG00000031181	-	97	79.787	Mandrillus_leucophaeus
ENSXETG00000024077	lsm2	100	98.947	ENSMAMG00000010053	si:ch73-14h10.2	73	98.947	Mastacembelus_armatus
ENSXETG00000024077	lsm2	99	96.875	ENSMZEG00005008688	si:ch73-14h10.2	100	96.875	Maylandia_zebra
ENSXETG00000024077	lsm2	100	98.947	ENSMAUG00000021966	Lsm2	100	98.947	Mesocricetus_auratus
ENSXETG00000024077	lsm2	76	77.778	ENSMICG00000046764	-	92	77.778	Microcebus_murinus
ENSXETG00000024077	lsm2	100	98.947	ENSMOCG00000015306	Lsm2	100	98.947	Microtus_ochrogaster
ENSXETG00000024077	lsm2	99	97.872	ENSMMOG00000005603	si:ch73-14h10.2	100	97.872	Mola_mola
ENSXETG00000024077	lsm2	99	98.936	ENSMODG00000015177	LSM2	99	98.936	Monodelphis_domestica
ENSXETG00000024077	lsm2	100	98.947	ENSMALG00000016490	si:ch73-14h10.2	100	98.947	Monopterus_albus
ENSXETG00000024077	lsm2	100	98.947	MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	Mus_caroli
ENSXETG00000024077	lsm2	100	98.947	ENSMUSG00000007050	Lsm2	100	98.947	Mus_musculus
ENSXETG00000024077	lsm2	100	98.947	MGP_PahariEiJ_G0020485	Lsm2	100	98.947	Mus_pahari
ENSXETG00000024077	lsm2	100	98.947	MGP_SPRETEiJ_G0022395	Lsm2	100	98.947	Mus_spretus
ENSXETG00000024077	lsm2	100	98.947	ENSNGAG00000003997	Lsm2	100	98.947	Nannospalax_galili
ENSXETG00000024077	lsm2	99	96.875	ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	Neolamprologus_brichardi
ENSXETG00000024077	lsm2	100	98.947	ENSNLEG00000035542	LSM2	100	98.947	Nomascus_leucogenys
ENSXETG00000024077	lsm2	75	98.592	ENSMEUG00000003419	LSM2	100	98.592	Notamacropus_eugenii
ENSXETG00000024077	lsm2	100	98.947	ENSOPRG00000003668	LSM2	100	98.947	Ochotona_princeps
ENSXETG00000024077	lsm2	100	98.947	ENSODEG00000017583	LSM2	100	98.947	Octodon_degus
ENSXETG00000024077	lsm2	100	98.947	ENSONIG00000019321	si:ch73-14h10.2	100	98.947	Oreochromis_niloticus
ENSXETG00000024077	lsm2	99	98.936	ENSOANG00000005398	LSM2	100	98.936	Ornithorhynchus_anatinus
ENSXETG00000024077	lsm2	100	98.947	ENSOCUG00000002583	LSM2	100	98.947	Oryctolagus_cuniculus
ENSXETG00000024077	lsm2	100	98.947	ENSORLG00000029858	si:ch73-14h10.2	100	98.947	Oryzias_latipes
ENSXETG00000024077	lsm2	100	75.806	ENSORLG00015000465	si:ch73-14h10.2	100	75.806	Oryzias_latipes_hsok
ENSXETG00000024077	lsm2	100	98.947	ENSOMEG00000002892	si:ch73-14h10.2	100	98.947	Oryzias_melastigma
ENSXETG00000024077	lsm2	99	98.936	ENSOARG00000004575	LSM2	100	98.936	Ovis_aries
ENSXETG00000024077	lsm2	79	85.333	ENSPPAG00000043941	-	93	85.333	Pan_paniscus
ENSXETG00000024077	lsm2	100	98.947	ENSPPAG00000032431	LSM2	100	98.947	Pan_paniscus
ENSXETG00000024077	lsm2	100	98.947	ENSPPRG00000015353	LSM2	100	98.947	Panthera_pardus
ENSXETG00000024077	lsm2	99	98.936	ENSPTIG00000010303	LSM2	99	98.936	Panthera_tigris_altaica
ENSXETG00000024077	lsm2	100	98.947	ENSPTRG00000017986	LSM2	100	98.947	Pan_troglodytes
ENSXETG00000024077	lsm2	100	98.947	ENSPANG00000024577	LSM2	100	98.947	Papio_anubis
ENSXETG00000024077	lsm2	100	98.947	ENSPKIG00000007028	si:ch73-14h10.2	100	98.947	Paramormyrops_kingsleyae
ENSXETG00000024077	lsm2	99	98.936	ENSPSIG00000004458	LSM2	78	98.936	Pelodiscus_sinensis
ENSXETG00000024077	lsm2	99	96.809	ENSPMGG00000018511	si:ch73-14h10.2	100	96.809	Periophthalmus_magnuspinnatus
ENSXETG00000024077	lsm2	99	98.936	ENSPCIG00000018560	-	95	98.936	Phascolarctos_cinereus
ENSXETG00000024077	lsm2	100	98.947	ENSPFOG00000001621	si:ch73-14h10.2	100	98.947	Poecilia_formosa
ENSXETG00000024077	lsm2	100	98.947	ENSPLAG00000017165	si:ch73-14h10.2	100	98.947	Poecilia_latipinna
ENSXETG00000024077	lsm2	100	98.947	ENSPMEG00000019574	si:ch73-14h10.2	100	98.947	Poecilia_mexicana
ENSXETG00000024077	lsm2	99	97.872	ENSPREG00000016534	si:ch73-14h10.2	100	97.872	Poecilia_reticulata
ENSXETG00000024077	lsm2	100	98.947	ENSPPYG00000016461	-	54	98.947	Pongo_abelii
ENSXETG00000024077	lsm2	100	98.947	ENSPCAG00000013737	LSM2	100	98.947	Procavia_capensis
ENSXETG00000024077	lsm2	100	98.947	ENSPCOG00000020134	LSM2	100	98.947	Propithecus_coquereli
ENSXETG00000024077	lsm2	100	98.947	ENSPVAG00000012405	LSM2	100	98.947	Pteropus_vampyrus
ENSXETG00000024077	lsm2	100	98.947	ENSPNYG00000019298	smx5	100	98.947	Pundamilia_nyererei
ENSXETG00000024077	lsm2	100	98.947	ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	Pygocentrus_nattereri
ENSXETG00000024077	lsm2	100	98.947	ENSRNOG00000048725	Lsm2	100	98.947	Rattus_norvegicus
ENSXETG00000024077	lsm2	56	92.453	ENSRNOG00000011065	AC126899.1	76	92.453	Rattus_norvegicus
ENSXETG00000024077	lsm2	79	85.333	ENSRBIG00000011356	-	91	85.333	Rhinopithecus_bieti
ENSXETG00000024077	lsm2	100	98.947	ENSRBIG00000010172	LSM2	100	98.947	Rhinopithecus_bieti
ENSXETG00000024077	lsm2	79	85.333	ENSRROG00000030708	-	91	85.333	Rhinopithecus_roxellana
ENSXETG00000024077	lsm2	100	98.947	ENSRROG00000030345	LSM2	100	98.947	Rhinopithecus_roxellana
ENSXETG00000024077	lsm2	100	63.158	YBL026W	LSM2	100	63.158	Saccharomyces_cerevisiae
ENSXETG00000024077	lsm2	100	98.947	ENSSBOG00000018943	LSM2	100	98.947	Saimiri_boliviensis_boliviensis
ENSXETG00000024077	lsm2	100	98.947	ENSSFOG00015006734	lsm2	100	98.947	Scleropages_formosus
ENSXETG00000024077	lsm2	100	98.947	ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	Scophthalmus_maximus
ENSXETG00000024077	lsm2	100	98.947	ENSSDUG00000021605	smx5	100	98.947	Seriola_dumerili
ENSXETG00000024077	lsm2	100	98.947	ENSSLDG00000002765	si:ch73-14h10.2	100	98.947	Seriola_lalandi_dorsalis
ENSXETG00000024077	lsm2	100	98.947	ENSSPUG00000009631	LSM2	100	98.947	Sphenodon_punctatus
ENSXETG00000024077	lsm2	100	98.947	ENSSPAG00000016904	si:ch73-14h10.2	100	98.947	Stegastes_partitus
ENSXETG00000024077	lsm2	100	98.947	ENSSSCG00000039021	LSM2	100	98.947	Sus_scrofa
ENSXETG00000024077	lsm2	99	97.872	ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	Takifugu_rubripes
ENSXETG00000024077	lsm2	69	95.455	ENSTNIG00000013770	si:ch73-14h10.2	99	95.455	Tetraodon_nigroviridis
ENSXETG00000024077	lsm2	100	98.947	ENSTTRG00000014131	LSM2	100	98.947	Tursiops_truncatus
ENSXETG00000024077	lsm2	99	98.936	ENSUMAG00000013425	LSM2	65	98.936	Ursus_maritimus
ENSXETG00000024077	lsm2	99	98.936	ENSVPAG00000001761	LSM2	100	98.936	Vicugna_pacos
ENSXETG00000024077	lsm2	79	97.333	ENSVVUG00000016264	-	93	97.333	Vulpes_vulpes
ENSXETG00000024077	lsm2	99	97.872	ENSXCOG00000006078	si:ch73-14h10.2	100	97.872	Xiphophorus_couchianus
ENSXETG00000024077	lsm2	99	97.872	ENSXMAG00000028018	si:ch73-14h10.2	100	97.872	Xiphophorus_maculatus