EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000024773 (Gene tree)
Gene ID: -
Gene Symbol: apex1
Alias: -
Full Name: Xenopus tropicalis APEX nuclease (multifunctional DNA repair enzyme) 1 (apex1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 6397 bases
Position: chrGL172727.1:2226075-2232471
Accession: NM_203976
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000045430	Exo_endo_phos	PF03372.23	7.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000045430	-	2120	XM_012958392	ENSXETP00000045430	316 (aa)	XP_012813846	F6SJE6

Gene Model

Click here to download ENSXETG00000024773's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000024773's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000024773	apex1	100	66.563	ENSG00000100823	APEX1	100	66.563	Homo_sapiens
ENSXETG00000024773	apex1	89	71.786	ENSAPOG00000017002	apex1	92	71.786	Acanthochromis_polyacanthus
ENSXETG00000024773	apex1	100	62.918	ENSAMEG00000005418	APEX1	100	64.396	Ailuropoda_melanoleuca
ENSXETG00000024773	apex1	87	72.364	ENSACIG00000010653	apex1	95	72.143	Amphilophus_citrinellus
ENSXETG00000024773	apex1	99	67.834	ENSAOCG00000009649	apex1	99	67.516	Amphiprion_ocellaris
ENSXETG00000024773	apex1	99	68.153	ENSAPEG00000021453	apex1	99	67.834	Amphiprion_percula
ENSXETG00000024773	apex1	99	69.010	ENSATEG00000002883	apex1	97	69.010	Anabas_testudineus
ENSXETG00000024773	apex1	100	70.347	ENSACAG00000008099	APEX1	100	70.347	Anolis_carolinensis
ENSXETG00000024773	apex1	100	66.458	ENSANAG00000030117	APEX1	100	66.458	Aotus_nancymaae
ENSXETG00000024773	apex1	87	74.909	ENSACLG00000018441	apex1	99	70.701	Astatotilapia_calliptera
ENSXETG00000024773	apex1	100	70.347	ENSAMXG00000034699	apex1	100	69.716	Astyanax_mexicanus
ENSXETG00000024773	apex1	100	66.144	ENSBTAG00000002745	APEX1	100	66.144	Bos_taurus
ENSXETG00000024773	apex1	82	45.594	WBGene00001372	exo-3	90	45.594	Caenorhabditis_elegans
ENSXETG00000024773	apex1	100	66.771	ENSCJAG00000009726	APEX1	100	66.771	Callithrix_jacchus
ENSXETG00000024773	apex1	100	65.831	ENSCAFG00000032033	APEX1	100	65.831	Canis_familiaris
ENSXETG00000024773	apex1	100	65.831	ENSCAFG00020014377	-	100	65.831	Canis_lupus_dingo
ENSXETG00000024773	apex1	54	57.803	ENSCAFG00020023002	-	96	57.803	Canis_lupus_dingo
ENSXETG00000024773	apex1	85	55.185	ENSCHIG00000014537	-	86	55.185	Capra_hircus
ENSXETG00000024773	apex1	100	66.144	ENSCHIG00000007298	-	100	66.144	Capra_hircus
ENSXETG00000024773	apex1	100	65.732	ENSTSYG00000034813	APEX1	100	65.732	Carlito_syrichta
ENSXETG00000024773	apex1	86	63.504	ENSCAPG00000016235	APEX1	91	69.492	Cavia_aperea
ENSXETG00000024773	apex1	100	66.667	ENSCPOG00000030909	APEX1	100	66.667	Cavia_porcellus
ENSXETG00000024773	apex1	100	66.771	ENSCCAG00000033056	-	100	66.771	Cebus_capucinus
ENSXETG00000024773	apex1	100	58.307	ENSCCAG00000031931	-	100	58.307	Cebus_capucinus
ENSXETG00000024773	apex1	100	66.254	ENSCATG00000015580	APEX1	100	64.087	Cercocebus_atys
ENSXETG00000024773	apex1	100	66.667	ENSCLAG00000001002	APEX1	100	66.667	Chinchilla_lanigera
ENSXETG00000024773	apex1	100	66.563	ENSCSAG00000016670	-	100	64.396	Chlorocebus_sabaeus
ENSXETG00000024773	apex1	100	66.563	ENSCSAG00000016685	-	100	64.396	Chlorocebus_sabaeus
ENSXETG00000024773	apex1	100	71.384	ENSCPBG00000009567	APEX1	100	71.384	Chrysemys_picta_bellii
ENSXETG00000024773	apex1	96	53.618	ENSCING00000008137	-	85	57.519	Ciona_intestinalis
ENSXETG00000024773	apex1	98	46.541	ENSCSAVG00000007144	-	100	52.713	Ciona_savignyi
ENSXETG00000024773	apex1	100	66.563	ENSCANG00000030726	APEX1	100	64.396	Colobus_angolensis_palliatus
ENSXETG00000024773	apex1	100	66.562	ENSCGRG00001017046	Apex1	100	66.562	Cricetulus_griseus_chok1gshd
ENSXETG00000024773	apex1	100	66.562	ENSCGRG00000008984	Apex1	100	66.562	Cricetulus_griseus_crigri
ENSXETG00000024773	apex1	99	69.427	ENSCSEG00000017499	apex1	99	68.790	Cynoglossus_semilaevis
ENSXETG00000024773	apex1	99	68.471	ENSCVAG00000022075	apex1	99	69.108	Cyprinodon_variegatus
ENSXETG00000024773	apex1	100	69.937	ENSDARG00000045843	apex1	100	69.620	Danio_rerio
ENSXETG00000024773	apex1	100	63.240	ENSDNOG00000042234	APEX1	95	63.240	Dasypus_novemcinctus
ENSXETG00000024773	apex1	100	66.355	ENSDORG00000001616	Apex1	100	66.355	Dipodomys_ordii
ENSXETG00000024773	apex1	100	66.978	ENSETEG00000004855	-	100	66.978	Echinops_telfairi
ENSXETG00000024773	apex1	75	62.185	ENSEBUG00000000622	-	92	62.185	Eptatretus_burgeri
ENSXETG00000024773	apex1	100	66.254	ENSEASG00005017489	APEX1	74	66.254	Equus_asinus_asinus
ENSXETG00000024773	apex1	100	66.254	ENSECAG00000022325	APEX1	82	66.254	Equus_caballus
ENSXETG00000024773	apex1	84	68.421	ENSEEUG00000012569	APEX1	92	68.421	Erinaceus_europaeus
ENSXETG00000024773	apex1	100	67.722	ENSELUG00000021706	apex1	100	69.085	Esox_lucius
ENSXETG00000024773	apex1	100	67.290	ENSFCAG00000030869	APEX1	100	65.015	Felis_catus
ENSXETG00000024773	apex1	100	67.290	ENSFDAG00000006120	APEX1	100	67.290	Fukomys_damarensis
ENSXETG00000024773	apex1	99	68.790	ENSFHEG00000009031	apex1	83	68.790	Fundulus_heteroclitus
ENSXETG00000024773	apex1	99	64.331	ENSGMOG00000007943	apex1	99	63.057	Gadus_morhua
ENSXETG00000024773	apex1	99	68.471	ENSGAFG00000005311	apex1	99	68.471	Gambusia_affinis
ENSXETG00000024773	apex1	99	69.108	ENSGACG00000019497	apex1	99	72.932	Gasterosteus_aculeatus
ENSXETG00000024773	apex1	100	71.384	ENSGAGG00000014999	APEX1	100	71.384	Gopherus_agassizii
ENSXETG00000024773	apex1	100	66.254	ENSGGOG00000002128	APEX1	100	66.254	Gorilla_gorilla
ENSXETG00000024773	apex1	87	74.545	ENSHBUG00000005894	apex1	99	69.745	Haplochromis_burtoni
ENSXETG00000024773	apex1	100	66.978	ENSHGLG00000002848	APEX1	100	66.978	Heterocephalus_glaber_female
ENSXETG00000024773	apex1	100	66.978	ENSHGLG00100017878	APEX1	100	66.978	Heterocephalus_glaber_male
ENSXETG00000024773	apex1	99	68.471	ENSHCOG00000009961	apex1	99	68.153	Hippocampus_comes
ENSXETG00000024773	apex1	100	70.253	ENSIPUG00000005799	apex1	100	69.620	Ictalurus_punctatus
ENSXETG00000024773	apex1	100	67.290	ENSSTOG00000010096	APEX1	100	67.290	Ictidomys_tridecemlineatus
ENSXETG00000024773	apex1	100	65.421	ENSJJAG00000012067	-	100	65.421	Jaculus_jaculus
ENSXETG00000024773	apex1	87	61.232	ENSJJAG00000020465	-	89	61.232	Jaculus_jaculus
ENSXETG00000024773	apex1	100	60.188	ENSJJAG00000003660	-	100	60.188	Jaculus_jaculus
ENSXETG00000024773	apex1	99	69.108	ENSKMAG00000021171	apex1	99	69.108	Kryptolebias_marmoratus
ENSXETG00000024773	apex1	99	67.834	ENSLBEG00000010248	apex1	99	67.834	Labrus_bergylta
ENSXETG00000024773	apex1	100	73.817	ENSLACG00000008617	APEX1	100	73.502	Latimeria_chalumnae
ENSXETG00000024773	apex1	100	71.787	ENSLOCG00000015516	apex1	99	71.924	Lepisosteus_oculatus
ENSXETG00000024773	apex1	100	64.134	ENSLAFG00000021872	APEX1	100	65.635	Loxodonta_africana
ENSXETG00000024773	apex1	100	66.254	ENSMFAG00000002565	APEX1	100	64.087	Macaca_fascicularis
ENSXETG00000024773	apex1	100	66.254	ENSMMUG00000048039	APEX1	100	64.087	Macaca_mulatta
ENSXETG00000024773	apex1	100	66.254	ENSMNEG00000036944	APEX1	100	64.577	Macaca_nemestrina
ENSXETG00000024773	apex1	100	66.254	ENSMLEG00000042125	APEX1	100	64.087	Mandrillus_leucophaeus
ENSXETG00000024773	apex1	99	68.790	ENSMAMG00000023526	apex1	99	69.108	Mastacembelus_armatus
ENSXETG00000024773	apex1	87	74.909	ENSMZEG00005014187	apex1	99	70.701	Maylandia_zebra
ENSXETG00000024773	apex1	100	66.562	ENSMAUG00000013994	Apex1	100	64.907	Mesocricetus_auratus
ENSXETG00000024773	apex1	100	66.875	ENSMICG00000043554	APEX1	100	66.875	Microcebus_murinus
ENSXETG00000024773	apex1	100	65.625	ENSMOCG00000013721	Apex1	100	65.625	Microtus_ochrogaster
ENSXETG00000024773	apex1	99	66.032	ENSMMOG00000010031	apex1	97	65.714	Mola_mola
ENSXETG00000024773	apex1	89	69.258	ENSMODG00000007125	APEX1	100	67.188	Monodelphis_domestica
ENSXETG00000024773	apex1	89	66.071	ENSMALG00000011699	apex1	75	66.071	Monopterus_albus
ENSXETG00000024773	apex1	99	66.771	MGP_CAROLIEiJ_G0019209	Apex1	99	66.771	Mus_caroli
ENSXETG00000024773	apex1	100	66.250	ENSMUSG00000035960	Apex1	100	66.250	Mus_musculus
ENSXETG00000024773	apex1	100	64.780	MGP_PahariEiJ_G0030232	Apex1	100	66.250	Mus_pahari
ENSXETG00000024773	apex1	100	66.250	MGP_SPRETEiJ_G0020101	Apex1	100	66.250	Mus_spretus
ENSXETG00000024773	apex1	100	65.325	ENSMLUG00000028957	APEX1	100	65.325	Myotis_lucifugus
ENSXETG00000024773	apex1	88	55.714	ENSNGAG00000021748	-	86	55.714	Nannospalax_galili
ENSXETG00000024773	apex1	100	66.144	ENSNGAG00000002725	-	100	66.144	Nannospalax_galili
ENSXETG00000024773	apex1	87	74.545	ENSNBRG00000005334	apex1	91	70.382	Neolamprologus_brichardi
ENSXETG00000024773	apex1	100	66.254	ENSNLEG00000010839	APEX1	100	66.254	Nomascus_leucogenys
ENSXETG00000024773	apex1	100	66.562	ENSMEUG00000014519	APEX1	100	64.669	Notamacropus_eugenii
ENSXETG00000024773	apex1	100	66.044	ENSOPRG00000014029	APEX1	100	63.665	Ochotona_princeps
ENSXETG00000024773	apex1	97	52.564	ENSODEG00000004777	-	99	52.564	Octodon_degus
ENSXETG00000024773	apex1	100	66.667	ENSODEG00000001703	-	100	66.667	Octodon_degus
ENSXETG00000024773	apex1	100	52.888	ENSODEG00000006583	-	100	51.368	Octodon_degus
ENSXETG00000024773	apex1	87	74.909	ENSONIG00000012089	apex1	99	70.701	Oreochromis_niloticus
ENSXETG00000024773	apex1	89	67.491	ENSOANG00000008836	APEX1	80	64.815	Ornithorhynchus_anatinus
ENSXETG00000024773	apex1	100	66.667	ENSOCUG00000005022	APEX1	100	66.667	Oryctolagus_cuniculus
ENSXETG00000024773	apex1	99	68.889	ENSORLG00000012378	apex1	99	69.524	Oryzias_latipes
ENSXETG00000024773	apex1	99	68.889	ENSORLG00020021371	apex1	99	69.524	Oryzias_latipes_hni
ENSXETG00000024773	apex1	99	68.889	ENSORLG00015020089	apex1	99	69.524	Oryzias_latipes_hsok
ENSXETG00000024773	apex1	99	69.841	ENSOMEG00000018876	apex1	99	70.476	Oryzias_melastigma
ENSXETG00000024773	apex1	100	68.125	ENSOGAG00000013335	-	100	65.204	Otolemur_garnettii
ENSXETG00000024773	apex1	96	60.065	ENSOGAG00000029355	-	87	61.232	Otolemur_garnettii
ENSXETG00000024773	apex1	97	56.209	ENSOARG00000014424	-	97	55.116	Ovis_aries
ENSXETG00000024773	apex1	97	62.783	ENSOARG00000001876	-	100	62.783	Ovis_aries
ENSXETG00000024773	apex1	100	65.831	ENSOARG00000019740	-	100	65.831	Ovis_aries
ENSXETG00000024773	apex1	100	66.563	ENSPPAG00000038760	APEX1	100	66.563	Pan_paniscus
ENSXETG00000024773	apex1	100	63.830	ENSPPRG00000011794	APEX1	100	65.325	Panthera_pardus
ENSXETG00000024773	apex1	100	67.290	ENSPTIG00000014829	APEX1	100	65.015	Panthera_tigris_altaica
ENSXETG00000024773	apex1	100	66.563	ENSPTRG00000006093	APEX1	100	66.563	Pan_troglodytes
ENSXETG00000024773	apex1	100	66.254	ENSPANG00000022757	APEX1	100	64.087	Papio_anubis
ENSXETG00000024773	apex1	87	72.000	ENSPKIG00000003504	apex1	100	67.722	Paramormyrops_kingsleyae
ENSXETG00000024773	apex1	100	60.182	ENSPMGG00000016596	apex1	82	66.787	Periophthalmus_magnuspinnatus
ENSXETG00000024773	apex1	100	66.562	ENSPEMG00000019097	Apex1	100	66.562	Peromyscus_maniculatus_bairdii
ENSXETG00000024773	apex1	94	73.737	ENSPMAG00000007275	-	94	75.362	Petromyzon_marinus
ENSXETG00000024773	apex1	100	65.517	ENSPCIG00000023274	APEX1	100	65.517	Phascolarctos_cinereus
ENSXETG00000024773	apex1	99	67.834	ENSPFOG00000004178	apex1	99	68.471	Poecilia_formosa
ENSXETG00000024773	apex1	99	67.516	ENSPLAG00000012779	apex1	99	68.153	Poecilia_latipinna
ENSXETG00000024773	apex1	99	67.834	ENSPMEG00000019623	apex1	99	68.471	Poecilia_mexicana
ENSXETG00000024773	apex1	99	67.834	ENSPREG00000014298	apex1	99	68.153	Poecilia_reticulata
ENSXETG00000024773	apex1	100	66.254	ENSPPYG00000005565	APEX1	100	66.254	Pongo_abelii
ENSXETG00000024773	apex1	100	65.421	ENSPCAG00000010376	APEX1	100	65.421	Procavia_capensis
ENSXETG00000024773	apex1	100	67.188	ENSPCOG00000021564	APEX1	100	67.188	Propithecus_coquereli
ENSXETG00000024773	apex1	100	65.635	ENSPVAG00000010736	APEX1	100	65.635	Pteropus_vampyrus
ENSXETG00000024773	apex1	87	74.909	ENSPNYG00000023940	apex1	99	70.701	Pundamilia_nyererei
ENSXETG00000024773	apex1	96	68.750	ENSPNAG00000020897	apex1	96	69.863	Pygocentrus_nattereri
ENSXETG00000024773	apex1	100	65.625	ENSRNOG00000009663	Apex1	100	65.625	Rattus_norvegicus
ENSXETG00000024773	apex1	100	66.563	ENSRBIG00000038325	APEX1	99	64.396	Rhinopithecus_bieti
ENSXETG00000024773	apex1	100	66.771	ENSSBOG00000018921	-	100	66.771	Saimiri_boliviensis_boliviensis
ENSXETG00000024773	apex1	100	57.680	ENSSBOG00000031372	-	100	56.467	Saimiri_boliviensis_boliviensis
ENSXETG00000024773	apex1	100	65.123	ENSSHAG00000013524	APEX1	100	65.123	Sarcophilus_harrisii
ENSXETG00000024773	apex1	100	67.405	ENSSFOG00015001948	apex1	100	67.405	Scleropages_formosus
ENSXETG00000024773	apex1	99	66.879	ENSSMAG00000013348	apex1	99	67.937	Scophthalmus_maximus
ENSXETG00000024773	apex1	99	68.790	ENSSDUG00000016377	apex1	99	69.108	Seriola_dumerili
ENSXETG00000024773	apex1	99	68.153	ENSSLDG00000023005	apex1	99	68.471	Seriola_lalandi_dorsalis
ENSXETG00000024773	apex1	92	69.072	ENSSPUG00000000531	APEX1	99	65.397	Sphenodon_punctatus
ENSXETG00000024773	apex1	99	66.879	ENSSPAG00000000458	apex1	99	66.879	Stegastes_partitus
ENSXETG00000024773	apex1	100	66.667	ENSSSCG00000040060	-	100	64.706	Sus_scrofa
ENSXETG00000024773	apex1	91	39.189	ENSSSCG00000039705	-	86	41.573	Sus_scrofa
ENSXETG00000024773	apex1	74	54.468	ENSTGUG00000014378	APEX1	100	54.468	Taeniopygia_guttata
ENSXETG00000024773	apex1	87	70.909	ENSTRUG00000004268	apex1	95	65.924	Takifugu_rubripes
ENSXETG00000024773	apex1	99	68.471	ENSTNIG00000005778	apex1	99	67.516	Tetraodon_nigroviridis
ENSXETG00000024773	apex1	100	65.109	ENSTBEG00000006405	APEX1	100	65.109	Tupaia_belangeri
ENSXETG00000024773	apex1	74	66.383	ENSTTRG00000007860	APEX1	100	66.383	Tursiops_truncatus
ENSXETG00000024773	apex1	100	66.044	ENSUAMG00000010457	APEX1	100	63.777	Ursus_americanus
ENSXETG00000024773	apex1	100	66.044	ENSUMAG00000009178	APEX1	100	63.777	Ursus_maritimus
ENSXETG00000024773	apex1	74	64.681	ENSVPAG00000005083	APEX1	100	64.681	Vicugna_pacos
ENSXETG00000024773	apex1	100	65.831	ENSVVUG00000009010	APEX1	100	65.831	Vulpes_vulpes
ENSXETG00000024773	apex1	99	68.153	ENSXCOG00000015233	apex1	99	68.471	Xiphophorus_couchianus
ENSXETG00000024773	apex1	99	68.153	ENSXMAG00000006195	apex1	99	68.471	Xiphophorus_maculatus